Wall clock time and date at job start Tue Mar 31 2020 06:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47098 * 2 1 4 4 C 1.52997 * 109.47104 * 240.00554 * 2 1 3 5 5 C 1.53004 * 109.47522 * 120.00128 * 2 1 3 6 6 H 1.08997 * 109.46796 * 300.00122 * 5 2 1 7 7 N 1.46499 * 109.47267 * 180.02562 * 5 2 1 8 8 C 1.34779 * 119.99898 * 85.00116 * 7 5 2 9 9 O 1.21283 * 119.99761 * 359.97438 * 8 7 5 10 10 C 1.50701 * 119.99936 * 180.02562 * 8 7 5 11 11 C 1.52995 * 109.47231 * 180.02562 * 10 8 7 12 12 C 1.50694 * 109.47418 * 179.97438 * 11 10 8 13 13 H 1.08002 * 119.99960 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00351 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99541 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00100 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47207 * 59.99823 * 16 14 12 18 18 H 1.48496 * 109.47151 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47114 * 300.00199 * 16 14 12 20 20 C 1.50696 * 109.47005 * 59.99771 * 5 2 1 21 21 C 1.38230 * 120.00309 * 260.00219 * 20 5 2 22 22 C 1.38235 * 120.00326 * 179.97438 * 21 20 5 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38240 * 120.00061 * 0.07178 * 23 22 21 25 25 C 1.38234 * 120.00081 * 359.88514 * 24 23 22 26 26 H 1.09008 * 109.47021 * 299.99608 * 1 2 3 27 27 H 1.08993 * 109.47478 * 59.99759 * 1 2 3 28 28 H 1.09001 * 109.46781 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46946 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46978 * 300.00542 * 3 2 1 31 31 H 1.09008 * 109.46865 * 60.00296 * 3 2 1 32 32 H 1.09001 * 109.46654 * 299.99284 * 4 2 1 33 33 H 1.08993 * 109.47209 * 59.99522 * 4 2 1 34 34 H 1.09001 * 109.47420 * 180.02562 * 4 2 1 35 35 H 0.96996 * 120.00167 * 265.00440 * 7 5 2 36 36 H 1.08998 * 109.46413 * 300.00000 * 10 8 7 37 37 H 1.08997 * 109.47283 * 59.99895 * 10 8 7 38 38 H 1.09007 * 109.47161 * 299.99939 * 11 10 8 39 39 H 1.09005 * 109.47598 * 59.99364 * 11 10 8 40 40 H 0.97005 * 119.99650 * 179.97438 * 15 14 12 41 41 H 1.08000 * 120.00376 * 359.97438 * 21 20 5 42 42 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 43 43 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 44 44 H 1.08005 * 120.00107 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.00147 * 180.10835 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 1.6768 -0.2075 2.1392 7 7 3.5051 -0.7207 1.2495 8 6 4.1785 0.3373 1.7431 9 8 3.5715 1.2891 2.1866 10 6 5.6855 0.3382 1.7428 11 6 6.1949 1.6452 2.3535 12 6 7.7018 1.6458 2.3538 13 1 8.2422 0.7985 1.9584 14 6 8.3907 2.7282 2.8589 15 7 7.7326 3.7602 3.3398 16 14 10.2587 2.7291 2.8586 17 1 10.7536 2.6080 1.4637 18 1 10.7531 3.9977 3.4514 19 1 10.7544 1.5821 3.6610 20 6 1.5378 -2.1420 1.2492 21 6 0.4428 -2.4881 2.0187 22 6 -0.0183 -3.7912 2.0183 23 6 0.6153 -4.7483 1.2479 24 6 1.7109 -4.4025 0.4791 25 6 2.1714 -3.0991 0.4788 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8901 32 1 1.6767 -1.7488 -1.2492 33 1 1.6766 -0.2073 -2.1392 34 1 3.1300 -0.7215 -1.2491 35 1 3.9904 -1.4817 0.8944 36 1 6.0492 -0.5037 2.3319 37 1 6.0487 0.2492 0.7190 38 1 5.8310 2.4874 1.7648 39 1 5.8316 1.7338 3.3774 40 1 8.2173 4.5215 3.6955 41 1 -0.0525 -1.7403 2.6203 42 1 -0.8711 -4.0626 2.6229 43 1 0.2553 -5.7666 1.2479 44 1 2.2062 -5.1504 -0.1225 45 1 3.0263 -2.8286 -0.1232 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292242357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:38 Heat of formation + Delta-G solvation = -53.443283 kcal Electronic energy + Delta-G solvation = -23429.334146 eV Core-core repulsion = 20217.005284 eV Total energy + Delta-G solvation = -3212.328862 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.70021 -39.94599 -37.93659 -35.54080 -34.74774 -32.97866 -32.08192 -31.77731 -28.32009 -28.17131 -27.91004 -26.53708 -23.79070 -23.25077 -22.34188 -21.11858 -19.78427 -18.86767 -18.05636 -17.36858 -16.99280 -16.68677 -16.44234 -16.08274 -15.78510 -15.23168 -14.97169 -14.85701 -14.43857 -14.22563 -14.07706 -14.03130 -13.48939 -13.39023 -13.21787 -13.03698 -12.83910 -12.74609 -12.55591 -12.51616 -12.35766 -12.07059 -11.89985 -11.82306 -11.67112 -11.63489 -11.40128 -11.29790 -10.65530 -10.55584 -9.99250 -9.74775 -9.56982 -8.17534 -6.31565 0.42642 0.53137 1.41655 1.46208 1.53913 1.78448 2.28009 2.45538 2.91684 3.15269 3.56443 3.82328 3.91228 4.04815 4.12750 4.16346 4.18937 4.34822 4.47457 4.53474 4.54668 4.59672 4.67372 4.75105 4.76552 4.83146 4.91320 5.01861 5.03711 5.05440 5.10060 5.18109 5.19510 5.27870 5.41581 5.47554 5.48518 5.52414 5.60402 5.64843 5.66610 5.76846 5.86408 6.13024 6.18674 6.63990 6.86825 7.38047 7.41553 8.94811 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023101 B = 0.003518 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.797727 B = 7957.329275 C = 8505.827903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.068 4.068 3 C -0.129 4.129 4 C -0.141 4.141 5 C 0.196 3.804 6 H 0.064 0.936 7 N -0.713 5.713 8 C 0.514 3.486 9 O -0.574 6.574 10 C -0.121 4.121 11 C 0.046 3.954 12 C -0.545 4.545 13 H 0.074 0.926 14 C -0.006 4.006 15 N -0.937 5.937 16 Si 0.973 3.027 17 H -0.262 1.262 18 H -0.288 1.288 19 H -0.263 1.263 20 C -0.091 4.091 21 C -0.121 4.121 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.120 4.120 25 C -0.118 4.118 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.033 0.967 30 H 0.057 0.943 31 H 0.036 0.964 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.410 0.590 36 H 0.099 0.901 37 H 0.101 0.899 38 H -0.017 1.017 39 H -0.019 1.019 40 H 0.263 0.737 41 H 0.120 0.880 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.984 -19.661 -9.453 27.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.069 4.069 3 C -0.186 4.186 4 C -0.198 4.198 5 C 0.091 3.909 6 H 0.082 0.918 7 N -0.366 5.366 8 C 0.302 3.698 9 O -0.453 6.453 10 C -0.161 4.161 11 C 0.009 3.991 12 C -0.583 4.583 13 H 0.092 0.908 14 C -0.204 4.204 15 N -0.577 5.577 16 Si 0.797 3.203 17 H -0.187 1.187 18 H -0.213 1.213 19 H -0.187 1.187 20 C -0.091 4.091 21 C -0.139 4.139 22 C -0.140 4.140 23 C -0.141 4.141 24 C -0.138 4.138 25 C -0.137 4.137 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.248 0.752 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.001 0.999 39 H -0.001 1.001 40 H 0.071 0.929 41 H 0.138 0.862 42 H 0.158 0.842 43 H 0.161 0.839 44 H 0.162 0.838 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.391 -18.818 -9.057 26.548 hybrid contribution 1.043 0.626 0.335 1.262 sum -15.348 -18.193 -8.722 25.350 Atomic orbital electron populations 1.21813 0.92913 1.02440 1.01979 1.20841 0.96626 0.94344 0.95130 1.21843 1.00105 0.96152 1.00517 1.21981 1.00939 1.00972 0.95899 1.19782 0.79886 0.93003 0.98185 0.91777 1.46019 1.06475 1.20435 1.63683 1.21144 0.90977 0.81789 0.75849 1.90667 1.71004 1.36117 1.47473 1.21638 0.89559 1.01108 1.03768 1.18640 0.94730 0.91796 0.93982 1.21694 0.92442 1.03531 1.40588 0.90759 1.26128 1.04487 0.95036 0.94726 1.70173 1.37951 1.07681 1.41894 0.85388 0.78379 0.77515 0.79055 1.18670 1.21321 1.18728 1.19740 0.97151 0.93703 0.98527 1.21139 0.96545 0.97400 0.98862 1.21379 1.00600 0.92564 0.99481 1.21505 0.95905 1.00374 0.96357 1.21432 0.96941 0.96066 0.99380 1.21153 1.00374 0.93252 0.98882 0.93305 0.91653 0.91341 0.94789 0.92440 0.94500 0.90611 0.92189 0.92906 0.75224 0.88256 0.88079 0.99875 1.00053 0.92884 0.86158 0.84250 0.83878 0.83787 0.84986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 8.07 71.98 0.58 -2.12 16 2 C -0.07 -1.63 0.62 -52.18 -0.03 -1.67 16 3 C -0.13 -4.03 7.00 71.98 0.50 -3.53 16 4 C -0.14 -2.76 7.23 71.98 0.52 -2.24 16 5 C 0.20 5.07 1.81 44.25 0.08 5.15 16 6 H 0.06 2.04 7.44 -2.39 -0.02 2.03 16 7 N -0.71 -19.92 4.15 -446.10 -1.85 -21.77 16 8 C 0.51 19.95 6.18 87.66 0.54 20.49 16 9 O -0.57 -27.60 13.10 -3.04 -0.04 -27.64 16 10 C -0.12 -4.94 5.64 29.85 0.17 -4.77 16 11 C 0.05 2.60 4.26 29.84 0.13 2.73 16 12 C -0.54 -31.39 9.11 25.60 0.23 -31.15 16 13 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 14 C -0.01 -0.37 5.46 84.66 0.46 0.09 16 15 N -0.94 -60.06 13.29 21.45 0.28 -59.78 16 16 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 17 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 18 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 19 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 20 C -0.09 -1.84 3.80 -19.87 -0.08 -1.91 16 21 C -0.12 -2.28 8.71 22.27 0.19 -2.09 16 22 C -0.12 -1.84 10.05 22.27 0.22 -1.61 16 23 C -0.12 -1.62 10.05 22.27 0.22 -1.40 16 24 C -0.12 -1.64 10.05 22.27 0.22 -1.42 16 25 C -0.12 -1.96 6.84 22.27 0.15 -1.81 16 26 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 1.23 6.64 -2.39 -0.02 1.21 16 29 H 0.03 1.23 5.77 -2.39 -0.01 1.22 16 30 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.04 1.32 7.53 -2.38 -0.02 1.30 16 32 H 0.08 1.26 5.59 -2.39 -0.01 1.24 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.05 1.08 7.60 -2.39 -0.02 1.06 16 35 H 0.41 8.90 6.88 -92.71 -0.64 8.26 16 36 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 37 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 38 H -0.02 -1.09 8.10 -2.38 -0.02 -1.11 16 39 H -0.02 -1.21 8.10 -2.38 -0.02 -1.23 16 40 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 41 H 0.12 2.22 8.04 -2.91 -0.02 2.20 16 42 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 43 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 44 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 45 H 0.13 1.88 6.09 -2.91 -0.02 1.86 16 Total: -1.00 -75.42 353.12 4.87 -70.54 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.33 Total: 19.18 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: 4.13 Total: -27.25 kcal Atomic # 7 Polarization: -79.99 SS G_CDS: -1.57 Total: -81.55 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.04 Total: -27.64 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -75.42 4.87 -70.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292242357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.097 kcal (2) G-P(sol) polarization free energy of solvation -75.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds