Wall clock time and date at job start Tue Mar 31 2020 06:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46903 * 2 1 4 4 C 1.52999 * 109.46901 * 240.00006 * 2 1 3 5 5 C 1.50703 * 109.46771 * 120.00292 * 2 1 3 6 6 C 1.38234 * 120.00257 * 60.00257 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.27927 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 N 1.46496 * 109.47288 * 270.27879 * 9 8 7 11 11 C 1.34779 * 120.00299 * 179.97438 * 10 9 8 12 12 O 1.21279 * 119.99453 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00003 * 179.97438 * 11 10 9 14 14 C 1.53000 * 109.46819 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.46956 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00289 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99994 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99792 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00077 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46904 * 90.00045 * 19 17 15 21 21 H 1.48491 * 109.47139 * 210.00354 * 19 17 15 22 22 H 1.48503 * 109.47025 * 330.00331 * 19 17 15 23 23 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 24 24 C 1.38234 * 119.99503 * 240.01857 * 5 2 1 25 25 H 1.09007 * 109.47341 * 299.99607 * 1 2 3 26 26 H 1.08998 * 109.47273 * 59.99893 * 1 2 3 27 27 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46371 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47244 * 300.00125 * 3 2 1 30 30 H 1.08999 * 109.46950 * 60.00346 * 3 2 1 31 31 H 1.09001 * 109.46958 * 300.00030 * 4 2 1 32 32 H 1.08998 * 109.47075 * 59.99980 * 4 2 1 33 33 H 1.08997 * 109.46840 * 179.97438 * 4 2 1 34 34 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 35 35 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 36 36 H 1.09007 * 109.47085 * 30.27493 * 9 8 7 37 37 H 1.08998 * 109.47270 * 150.26989 * 9 8 7 38 38 H 0.97001 * 119.99949 * 359.97438 * 10 9 8 39 39 H 1.08995 * 109.47105 * 299.99869 * 13 11 10 40 40 H 1.09003 * 109.46939 * 60.00739 * 13 11 10 41 41 H 1.09007 * 109.47298 * 300.00073 * 14 13 11 42 42 H 1.08993 * 109.47313 * 60.00159 * 14 13 11 43 43 H 0.97003 * 120.00004 * 179.97438 * 18 17 15 44 44 H 1.08001 * 120.00274 * 179.72697 * 23 8 7 45 45 H 1.07997 * 120.00460 * 0.02562 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.6983 -2.0340 1.4492 7 6 2.1544 -2.6839 2.5808 8 6 2.9534 -2.0137 3.4880 9 6 3.4558 -2.7241 4.7185 10 7 2.4907 -2.5561 5.8077 11 6 2.7310 -3.1101 7.0126 12 8 3.7462 -3.7482 7.1949 13 6 1.7384 -2.9368 8.1331 14 6 2.2484 -3.6582 9.3823 15 6 1.2555 -3.4853 10.5027 16 1 0.3514 -2.9174 10.3403 17 6 1.5014 -4.0523 11.7353 18 7 2.6026 -4.7434 11.9333 19 14 0.2710 -3.8375 13.1244 20 1 -0.7155 -4.9469 13.0877 21 1 0.9859 -3.8535 14.4258 22 1 -0.4356 -2.5413 12.9637 23 6 3.2870 -0.6901 3.2695 24 6 2.8267 -0.0386 2.1406 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1392 33 1 3.1299 -0.7208 -1.2495 34 1 1.0771 -2.5587 0.7384 35 1 1.8898 -3.7166 2.7539 36 1 3.5773 -3.7854 4.5012 37 1 4.4159 -2.3019 5.0152 38 1 1.6786 -2.0461 5.6617 39 1 1.6177 -1.8756 8.3507 40 1 0.7781 -3.3585 7.8363 41 1 2.3695 -4.7195 9.1651 42 1 3.2086 -3.2362 9.6790 43 1 2.7758 -5.1419 12.8006 44 1 3.9077 -0.1652 3.9806 45 1 3.0870 0.9956 1.9701 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292753854.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:25 Heat of formation + Delta-G solvation = -45.890056 kcal Electronic energy + Delta-G solvation = -21844.839988 eV Core-core repulsion = 18632.838658 eV Total energy + Delta-G solvation = -3212.001330 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.28166 -39.02091 -36.99118 -34.27898 -33.41322 -31.34435 -31.24624 -30.34816 -27.74443 -27.62100 -26.61598 -25.00569 -22.57494 -22.23039 -21.33176 -19.68535 -19.43414 -17.16759 -16.61644 -15.79874 -15.66413 -15.55861 -14.99354 -14.80592 -14.63690 -14.39290 -14.06396 -13.94729 -13.68989 -13.12590 -13.01233 -12.92803 -12.43832 -12.33947 -12.13856 -12.06010 -11.92956 -11.83675 -11.58330 -11.32219 -11.13255 -10.91163 -10.88869 -10.78681 -10.57867 -9.92686 -9.64191 -9.26611 -9.10970 -9.06900 -8.74576 -8.67303 -8.29742 -5.93925 -3.98186 1.04852 1.21654 3.29830 3.34801 3.37053 3.40961 3.43727 3.90924 4.21636 4.36799 4.49691 4.61703 4.63745 4.76334 4.81929 4.91366 5.14784 5.23854 5.24511 5.30860 5.37755 5.40871 5.48799 5.49725 5.51633 5.55785 5.60186 5.68498 5.81585 5.85528 5.90652 5.92010 5.92963 6.23772 6.26361 6.28873 6.40171 6.45992 6.73150 6.79964 6.93035 7.76920 7.89334 7.93780 8.09872 8.41345 8.81987 9.10568 9.65115 11.17030 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.032634 B = 0.002334 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.803940 B =11991.320176 C =12352.821581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.031 4.031 3 C -0.145 4.145 4 C -0.138 4.138 5 C -0.067 4.067 6 C -0.118 4.118 7 C -0.099 4.099 8 C -0.105 4.105 9 C 0.159 3.841 10 N -0.740 5.740 11 C 0.509 3.491 12 O -0.536 6.536 13 C -0.129 4.129 14 C 0.037 3.963 15 C -0.526 4.526 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.099 4.099 24 C -0.124 4.124 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.398 0.602 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.261 0.739 44 H 0.124 0.876 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.818 11.392 -28.187 30.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.031 4.031 3 C -0.202 4.202 4 C -0.196 4.196 5 C -0.068 4.068 6 C -0.136 4.136 7 C -0.117 4.117 8 C -0.106 4.106 9 C 0.036 3.964 10 N -0.394 5.394 11 C 0.298 3.702 12 O -0.411 6.411 13 C -0.169 4.169 14 C -0.001 4.001 15 C -0.565 4.565 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.117 4.117 24 C -0.142 4.142 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.231 0.769 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.070 0.930 44 H 0.142 0.858 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.952 10.807 -27.893 29.977 hybrid contribution -1.002 0.295 0.703 1.259 sum -2.954 11.102 -27.190 29.517 Atomic orbital electron populations 1.21894 0.93593 1.02158 1.01954 1.19520 0.95780 0.95066 0.92735 1.21968 1.01223 0.94961 1.02016 1.21889 1.01276 1.00239 0.96152 1.19837 0.97228 0.94012 0.95691 1.20950 1.00654 0.94346 0.97655 1.21101 0.96719 1.00055 0.93842 1.19961 0.99314 0.94627 0.96655 1.20101 0.92687 0.99817 0.83794 1.46281 1.24527 1.57192 1.11438 1.21591 0.88053 0.77584 0.83013 1.90669 1.28373 1.39818 1.82226 1.21863 0.97172 1.02935 0.94968 1.18901 0.96531 0.95911 0.88745 1.21231 1.05789 1.33369 0.96090 0.92613 1.25035 0.95422 0.95284 0.98717 1.70002 1.24844 1.34478 1.23526 0.86586 0.81216 0.78437 0.81674 1.20683 1.21234 1.19904 1.21130 0.99377 0.93951 0.97270 1.21169 0.98459 1.00214 0.94318 0.92377 0.92359 0.92373 0.92231 0.92381 0.92166 0.92385 0.92365 0.92467 0.86153 0.85839 0.91085 0.91081 0.76865 0.90269 0.90269 0.95828 0.95815 0.92971 0.85841 0.85593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.29 37.16 0.31 -0.55 16 2 C -0.03 -0.20 0.85 -155.66 -0.13 -0.34 16 3 C -0.14 -0.84 7.13 37.16 0.27 -0.57 16 4 C -0.14 -0.83 8.29 37.16 0.31 -0.52 16 5 C -0.07 -0.57 4.76 -104.62 -0.50 -1.07 16 6 C -0.12 -1.04 8.71 -39.58 -0.34 -1.38 16 7 C -0.10 -0.98 9.70 -39.58 -0.38 -1.36 16 8 C -0.11 -1.13 5.25 -104.63 -0.55 -1.68 16 9 C 0.16 2.09 5.80 -5.20 -0.03 2.06 16 10 N -0.74 -10.82 5.55 -61.47 -0.34 -11.16 16 11 C 0.51 10.03 7.83 -10.98 -0.09 9.94 16 12 O -0.54 -12.90 15.98 5.56 0.09 -12.81 16 13 C -0.13 -2.68 5.64 -27.88 -0.16 -2.84 16 14 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 15 C -0.53 -15.13 9.11 -34.44 -0.31 -15.44 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.72 13.29 55.43 0.74 -26.98 16 19 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.10 -0.98 9.70 -39.58 -0.38 -1.36 16 24 C -0.12 -1.09 8.98 -39.58 -0.36 -1.45 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.35 7.39 -51.93 -0.38 -0.03 16 28 H 0.06 0.34 7.51 -51.93 -0.39 -0.05 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.35 7.51 -51.93 -0.39 -0.04 16 31 H 0.06 0.34 7.39 -51.93 -0.38 -0.04 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.12 0.87 7.10 -52.49 -0.37 0.50 16 35 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 36 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 37 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 38 H 0.40 4.83 8.46 -40.82 -0.35 4.49 16 39 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 42 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 45 H 0.13 0.91 5.89 -52.49 -0.31 0.60 16 LS Contribution 368.23 15.07 5.55 5.55 Total: -1.00 -33.91 368.23 -9.16 -43.07 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -7.60 Total: -0.43 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -2.57 Total: -14.09 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.40 Total: -38.15 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.09 Total: -12.81 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.91 -9.16 -43.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292753854.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.816 kcal (2) G-P(sol) polarization free energy of solvation -33.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds