Wall clock time and date at job start Tue Mar 31 2020 06:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46903 * 2 1 4 4 C 1.52999 * 109.46901 * 240.00006 * 2 1 3 5 5 C 1.50703 * 109.46771 * 120.00292 * 2 1 3 6 6 C 1.38234 * 120.00257 * 60.00257 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.27927 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 N 1.46496 * 109.47288 * 270.27879 * 9 8 7 11 11 C 1.34779 * 120.00299 * 179.97438 * 10 9 8 12 12 O 1.21279 * 119.99453 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00003 * 179.97438 * 11 10 9 14 14 C 1.53000 * 109.46819 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.46956 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00289 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99994 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99792 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00077 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46904 * 90.00045 * 19 17 15 21 21 H 1.48491 * 109.47139 * 210.00354 * 19 17 15 22 22 H 1.48503 * 109.47025 * 330.00331 * 19 17 15 23 23 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 24 24 C 1.38234 * 119.99503 * 240.01857 * 5 2 1 25 25 H 1.09007 * 109.47341 * 299.99607 * 1 2 3 26 26 H 1.08998 * 109.47273 * 59.99893 * 1 2 3 27 27 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46371 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47244 * 300.00125 * 3 2 1 30 30 H 1.08999 * 109.46950 * 60.00346 * 3 2 1 31 31 H 1.09001 * 109.46958 * 300.00030 * 4 2 1 32 32 H 1.08998 * 109.47075 * 59.99980 * 4 2 1 33 33 H 1.08997 * 109.46840 * 179.97438 * 4 2 1 34 34 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 35 35 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 36 36 H 1.09007 * 109.47085 * 30.27493 * 9 8 7 37 37 H 1.08998 * 109.47270 * 150.26989 * 9 8 7 38 38 H 0.97001 * 119.99949 * 359.97438 * 10 9 8 39 39 H 1.08995 * 109.47105 * 299.99869 * 13 11 10 40 40 H 1.09003 * 109.46939 * 60.00739 * 13 11 10 41 41 H 1.09007 * 109.47298 * 300.00073 * 14 13 11 42 42 H 1.08993 * 109.47313 * 60.00159 * 14 13 11 43 43 H 0.97003 * 120.00004 * 179.97438 * 18 17 15 44 44 H 1.08001 * 120.00274 * 179.72697 * 23 8 7 45 45 H 1.07997 * 120.00460 * 0.02562 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.6983 -2.0340 1.4492 7 6 2.1544 -2.6839 2.5808 8 6 2.9534 -2.0137 3.4880 9 6 3.4558 -2.7241 4.7185 10 7 2.4907 -2.5561 5.8077 11 6 2.7310 -3.1101 7.0126 12 8 3.7462 -3.7482 7.1949 13 6 1.7384 -2.9368 8.1331 14 6 2.2484 -3.6582 9.3823 15 6 1.2555 -3.4853 10.5027 16 1 0.3514 -2.9174 10.3403 17 6 1.5014 -4.0523 11.7353 18 7 2.6026 -4.7434 11.9333 19 14 0.2710 -3.8375 13.1244 20 1 -0.7155 -4.9469 13.0877 21 1 0.9859 -3.8535 14.4258 22 1 -0.4356 -2.5413 12.9637 23 6 3.2870 -0.6901 3.2695 24 6 2.8267 -0.0386 2.1406 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1392 33 1 3.1299 -0.7208 -1.2495 34 1 1.0771 -2.5587 0.7384 35 1 1.8898 -3.7166 2.7539 36 1 3.5773 -3.7854 4.5012 37 1 4.4159 -2.3019 5.0152 38 1 1.6786 -2.0461 5.6617 39 1 1.6177 -1.8756 8.3507 40 1 0.7781 -3.3585 7.8363 41 1 2.3695 -4.7195 9.1651 42 1 3.2086 -3.2362 9.6790 43 1 2.7758 -5.1419 12.8006 44 1 3.9077 -0.1652 3.9806 45 1 3.0870 0.9956 1.9701 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292753854.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:24 Heat of formation + Delta-G solvation = -65.843260 kcal Electronic energy + Delta-G solvation = -21845.705224 eV Core-core repulsion = 18632.838658 eV Total energy + Delta-G solvation = -3212.866566 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.10451 -40.43803 -37.74630 -35.65507 -35.40357 -33.08794 -32.04367 -31.50111 -28.23884 -28.15406 -28.07313 -26.52417 -23.67383 -23.27798 -22.62982 -21.24227 -20.06999 -18.86513 -17.86469 -17.28219 -16.82373 -16.73205 -16.39113 -16.15493 -15.74565 -15.12127 -14.94727 -14.71374 -14.55899 -14.44812 -14.23699 -14.19453 -13.60692 -13.47725 -13.23846 -12.96092 -12.86216 -12.80454 -12.56766 -12.51273 -12.45637 -12.25393 -11.91897 -11.81448 -11.64129 -11.50927 -11.35394 -11.30718 -10.82739 -10.56931 -10.10817 -9.82548 -9.53579 -8.17776 -6.31903 0.28120 0.49496 1.42171 1.45156 1.56090 1.70668 2.27817 2.45089 2.92098 3.14997 3.59183 3.79242 3.79913 4.05209 4.08025 4.13824 4.14359 4.40055 4.40742 4.50072 4.53975 4.56032 4.70191 4.70614 4.81248 4.84665 4.92976 5.00574 5.04127 5.06376 5.08246 5.15421 5.17286 5.26370 5.38872 5.41535 5.46207 5.51225 5.56595 5.63370 5.66550 5.74511 5.85674 6.07250 6.17877 6.59505 6.86495 7.32738 7.38324 8.94913 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.032634 B = 0.002334 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.803940 B =11991.320176 C =12352.821581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.031 4.031 3 C -0.145 4.145 4 C -0.138 4.138 5 C -0.065 4.065 6 C -0.120 4.120 7 C -0.104 4.104 8 C -0.116 4.116 9 C 0.162 3.838 10 N -0.714 5.714 11 C 0.511 3.489 12 O -0.589 6.589 13 C -0.119 4.119 14 C 0.042 3.958 15 C -0.543 4.543 16 H 0.076 0.924 17 C -0.009 4.009 18 N -0.938 5.938 19 Si 0.975 3.025 20 H -0.271 1.271 21 H -0.286 1.286 22 H -0.255 1.255 23 C -0.105 4.105 24 C -0.127 4.127 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.137 0.863 35 H 0.127 0.873 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.414 0.586 39 H 0.104 0.896 40 H 0.104 0.896 41 H -0.018 1.018 42 H -0.018 1.018 43 H 0.263 0.737 44 H 0.127 0.873 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.162 13.200 -29.678 32.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 C -0.202 4.202 4 C -0.195 4.195 5 C -0.065 4.065 6 C -0.138 4.138 7 C -0.123 4.123 8 C -0.116 4.116 9 C 0.039 3.961 10 N -0.367 5.367 11 C 0.300 3.700 12 O -0.469 6.469 13 C -0.158 4.158 14 C 0.004 3.996 15 C -0.581 4.581 16 H 0.094 0.906 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.799 3.201 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.179 1.179 23 C -0.123 4.123 24 C -0.145 4.145 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.154 0.846 35 H 0.145 0.855 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.250 0.750 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.001 0.999 42 H 0.001 0.999 43 H 0.071 0.929 44 H 0.145 0.855 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.339 12.658 -29.442 32.340 hybrid contribution -0.249 -0.240 1.041 1.097 sum -4.589 12.419 -28.401 31.335 Atomic orbital electron populations 1.21891 0.93110 1.02287 1.02229 1.19576 0.96109 0.95398 0.92041 1.21973 1.01243 0.94457 1.02514 1.21886 1.00928 1.00379 0.96284 1.20135 0.96323 0.93965 0.96097 1.21149 1.00587 0.94631 0.97461 1.21202 0.96637 1.00339 0.94121 1.19718 1.00793 0.95049 0.96040 1.20111 0.92056 0.99748 0.84157 1.46002 1.25150 1.55415 1.10165 1.21361 0.87022 0.77396 0.84228 1.90655 1.30415 1.42536 1.83313 1.21637 0.98013 1.03580 0.92615 1.18695 0.94998 0.93935 0.91979 1.21717 1.06462 1.33325 0.96581 0.90601 1.26164 0.97574 0.94695 1.02159 1.70183 1.27390 1.35758 1.24443 0.85301 0.78260 0.79307 0.77248 1.19672 1.21167 1.17910 1.21233 0.99510 0.93664 0.97912 1.21382 0.98233 1.01002 0.93871 0.93012 0.91204 0.92341 0.92236 0.91358 0.92258 0.92338 0.91192 0.93015 0.84562 0.85513 0.91874 0.91871 0.74950 0.87796 0.87776 0.99931 0.99910 0.92853 0.85518 0.84033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.29 71.98 0.60 -0.77 16 2 C -0.03 -0.34 0.85 -52.93 -0.05 -0.38 16 3 C -0.14 -1.33 7.13 71.98 0.51 -0.82 16 4 C -0.14 -1.33 8.29 71.98 0.60 -0.73 16 5 C -0.06 -0.96 4.76 -19.87 -0.09 -1.05 16 6 C -0.12 -1.88 8.71 22.27 0.19 -1.69 16 7 C -0.10 -1.93 9.70 22.27 0.22 -1.72 16 8 C -0.12 -2.38 5.25 -19.87 -0.10 -2.49 16 9 C 0.16 4.26 5.80 85.63 0.50 4.75 16 10 N -0.71 -20.40 5.55 -466.79 -2.59 -22.99 16 11 C 0.51 20.38 7.83 87.66 0.69 21.07 16 12 O -0.59 -29.70 15.98 -3.03 -0.05 -29.74 16 13 C -0.12 -4.88 5.64 29.85 0.17 -4.71 16 14 C 0.04 2.36 4.26 29.85 0.13 2.49 16 15 C -0.54 -31.33 9.11 25.60 0.23 -31.10 16 16 H 0.08 3.98 7.74 -2.91 -0.02 3.95 16 17 C -0.01 -0.51 5.46 84.66 0.46 -0.04 16 18 N -0.94 -60.19 13.29 21.45 0.28 -59.91 16 19 Si 0.98 44.73 29.54 68.60 2.03 46.76 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 23 C -0.10 -1.94 9.70 22.27 0.22 -1.73 16 24 C -0.13 -2.01 8.98 22.27 0.20 -1.81 16 25 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 26 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.06 0.57 7.39 -2.39 -0.02 0.56 16 28 H 0.06 0.55 7.51 -2.38 -0.02 0.53 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.56 7.51 -2.39 -0.02 0.54 16 31 H 0.06 0.56 7.39 -2.39 -0.02 0.54 16 32 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.14 1.66 7.10 -2.91 -0.02 1.64 16 35 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.06 1.77 8.09 -2.38 -0.02 1.75 16 37 H 0.06 1.77 8.09 -2.39 -0.02 1.76 16 38 H 0.41 9.28 8.46 -92.71 -0.78 8.49 16 39 H 0.10 3.75 8.14 -2.39 -0.02 3.74 16 40 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 41 H -0.02 -1.14 8.10 -2.38 -0.02 -1.16 16 42 H -0.02 -1.12 8.10 -2.39 -0.02 -1.14 16 43 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 44 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 45 H 0.14 1.74 5.89 -2.91 -0.02 1.73 16 Total: -1.00 -75.98 368.23 4.31 -71.67 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.17 Total: 14.94 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: 4.46 Total: -20.73 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -2.30 Total: -82.90 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.05 Total: -29.74 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -75.98 4.31 -71.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292753854.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.830 kcal (2) G-P(sol) polarization free energy of solvation -75.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds