Wall clock time and date at job start Tue Mar 31 2020 06:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47381 * 2 1 4 4 C 1.53002 * 109.46994 * 120.00157 * 2 1 3 5 5 C 1.50694 * 109.47086 * 299.99473 * 4 2 1 6 6 H 1.08004 * 120.00232 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00128 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00066 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00232 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47254 * 89.99760 * 9 7 5 11 11 H 1.48503 * 109.47147 * 209.99843 * 9 7 5 12 12 H 1.48500 * 109.46874 * 329.99680 * 9 7 5 13 13 C 1.53003 * 109.46795 * 239.99769 * 2 1 3 14 14 N 1.46898 * 109.47109 * 65.70169 * 13 2 1 15 15 C 1.47910 * 111.00053 * 277.96065 * 14 13 2 16 16 C 1.54609 * 102.62414 * 265.47913 * 15 14 13 17 17 H 1.08995 * 110.73947 * 216.12727 * 16 15 14 18 18 C 1.52999 * 110.89489 * 92.87000 * 16 15 14 19 19 O 1.42901 * 109.46820 * 180.57361 * 18 16 15 20 20 C 1.51577 * 102.82924 * 334.46523 * 16 15 14 21 21 C 1.37926 * 131.55613 * 196.33470 * 20 16 15 22 22 C 1.38298 * 120.07987 * 179.27605 * 21 20 16 23 23 C 1.38299 * 119.88466 * 0.02562 * 22 21 20 24 24 C 1.37916 * 120.26498 * 0.13879 * 23 22 21 25 25 C 1.38957 * 107.95772 * 15.94223 * 20 16 15 26 26 H 1.08993 * 109.47459 * 171.94101 * 1 2 3 27 27 H 1.09000 * 109.47154 * 51.93612 * 1 2 3 28 28 H 1.09002 * 109.46624 * 291.93895 * 1 2 3 29 29 H 1.08999 * 109.47261 * 64.70639 * 3 2 1 30 30 H 1.09000 * 109.47209 * 184.71048 * 3 2 1 31 31 H 1.09001 * 109.46945 * 304.70171 * 3 2 1 32 32 H 1.09000 * 109.47231 * 59.99587 * 4 2 1 33 33 H 1.09003 * 109.46990 * 179.97438 * 4 2 1 34 34 H 0.96996 * 120.00320 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.46900 * 185.70165 * 13 2 1 36 36 H 1.08996 * 109.47053 * 305.70010 * 13 2 1 37 37 H 1.08996 * 110.77872 * 23.75854 * 15 14 13 38 38 H 1.08995 * 110.78328 * 147.19772 * 15 14 13 39 39 H 1.09000 * 109.47007 * 300.56742 * 18 16 15 40 40 H 1.08994 * 109.47339 * 60.57249 * 18 16 15 41 41 H 0.96701 * 113.99902 * 180.02562 * 19 18 16 42 42 H 1.08001 * 119.95563 * 359.29202 * 21 20 16 43 43 H 1.08003 * 120.05943 * 179.97438 * 22 21 20 44 44 H 1.08004 * 119.87309 * 180.11711 * 23 22 21 45 45 H 1.08000 * 119.89998 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5378 -0.0109 2.4797 6 1 0.9165 0.8671 2.3806 7 6 1.8712 -0.4816 3.7319 8 7 2.6272 -1.5509 3.8526 9 14 1.2481 0.3986 5.2572 10 1 -0.0597 -0.1772 5.6615 11 1 2.2264 0.2285 6.3613 12 1 1.0822 1.8444 4.9612 13 6 2.0399 -0.7213 -1.2493 14 7 1.6658 0.0460 -2.4447 15 6 0.2708 -0.2412 -2.8439 16 6 0.4444 -1.3572 -3.8997 17 1 -0.2904 -1.2512 -4.6977 18 6 0.3438 -2.7403 -3.2534 19 8 0.5215 -3.7468 -4.2522 20 6 1.8452 -1.1101 -4.4234 21 6 2.4890 -1.5546 -5.5594 22 6 3.7903 -1.1633 -5.8167 23 6 4.4456 -0.3257 -4.9326 24 6 3.8075 0.1189 -3.7935 25 6 2.4966 -0.2727 -3.5260 26 1 -0.3634 -1.0174 -0.1441 27 1 -0.3633 0.6336 -0.8091 28 1 -0.3633 0.3840 0.9533 29 1 1.7472 1.9314 0.9291 30 1 3.1268 1.4436 -0.0844 31 1 1.6096 1.9800 -0.8449 32 1 1.6766 -1.7489 1.2493 33 1 3.1300 -0.7217 1.2490 34 1 2.8622 -1.8819 4.7336 35 1 3.1252 -0.8106 -1.1997 36 1 1.5956 -1.7152 -1.3017 37 1 -0.3086 -0.6004 -1.9934 38 1 -0.1943 0.6400 -3.2856 39 1 1.1175 -2.8430 -2.4925 40 1 -0.6370 -2.8554 -2.7922 41 1 0.4696 -4.6509 -3.9131 42 1 1.9761 -2.2088 -6.2489 43 1 4.2942 -1.5119 -6.7061 44 1 5.4611 -0.0187 -5.1346 45 1 4.3247 0.7732 -3.1074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293957433.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:14 Heat of formation + Delta-G solvation = -15.364609 kcal Electronic energy + Delta-G solvation = -23984.117877 eV Core-core repulsion = 20773.440230 eV Total energy + Delta-G solvation = -3210.677647 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.04435 -37.56253 -36.88458 -35.41585 -32.58999 -31.91881 -29.48217 -29.30341 -27.01927 -26.94114 -26.20913 -24.23807 -22.88240 -22.52397 -20.80702 -20.42627 -18.06630 -17.37924 -16.53185 -16.30569 -16.06902 -15.36293 -14.97179 -14.61867 -14.45256 -14.00561 -13.66063 -13.60234 -13.12973 -12.83528 -12.60800 -12.53475 -12.23608 -12.19441 -12.02072 -11.72033 -11.42203 -11.08486 -10.88794 -10.83805 -10.77388 -10.63171 -10.50541 -10.41460 -10.06594 -9.96484 -9.65696 -9.36455 -9.03500 -8.74461 -8.67533 -8.33958 -7.68225 -5.98504 -3.98748 1.43026 1.52724 3.31702 3.38736 3.41541 3.75079 3.93199 4.05188 4.46756 4.57026 4.94021 5.01306 5.11861 5.16547 5.21553 5.36541 5.37418 5.39907 5.43880 5.63108 5.68206 5.75129 5.80277 5.86257 5.95122 6.04032 6.15542 6.20013 6.26540 6.44150 6.49573 6.57258 6.62971 6.66020 6.75043 6.82122 6.89440 7.12212 7.18415 7.26300 7.34537 7.49548 7.53574 7.67163 7.81204 8.01347 8.45346 9.06356 9.64194 11.13119 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022412 B = 0.004187 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.008820 B = 6685.411523 C = 7105.884305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.054 4.054 3 C -0.115 4.115 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.066 3.934 14 N -0.483 5.483 15 C 0.042 3.958 16 C -0.078 4.078 17 H 0.091 0.909 18 C 0.084 3.916 19 O -0.571 6.571 20 C -0.132 4.132 21 C -0.075 4.075 22 C -0.145 4.145 23 C -0.104 4.104 24 C -0.117 4.117 25 C 0.101 3.899 26 H 0.038 0.962 27 H 0.043 0.957 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.037 0.963 31 H 0.042 0.958 32 H 0.012 0.988 33 H 0.015 0.985 34 H 0.259 0.741 35 H 0.069 0.931 36 H 0.042 0.958 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.378 0.622 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.283 -0.708 -17.564 17.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.055 4.055 3 C -0.173 4.173 4 C -0.003 4.003 5 C -0.545 4.545 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.059 4.059 14 N -0.199 5.199 15 C -0.085 4.085 16 C -0.098 4.098 17 H 0.109 0.891 18 C 0.006 3.994 19 O -0.376 6.376 20 C -0.135 4.135 21 C -0.094 4.094 22 C -0.164 4.164 23 C -0.123 4.123 24 C -0.137 4.137 25 C 0.004 3.996 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.030 0.970 33 H 0.033 0.967 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.124 0.876 38 H 0.107 0.893 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.225 0.775 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.111 0.261 -17.598 17.726 hybrid contribution -0.362 -0.931 1.115 1.497 sum -2.473 -0.670 -16.483 16.681 Atomic orbital electron populations 1.22035 0.96165 0.99465 1.01665 1.20620 0.94832 0.96243 0.93766 1.21591 0.99471 0.95702 1.00512 1.19114 0.96138 0.94964 0.90122 1.21215 1.30819 1.11953 0.90523 0.92200 1.25006 0.95355 0.95105 0.99041 1.69962 1.37194 1.23230 1.23322 0.86670 0.78525 0.80160 0.83107 1.20823 1.21369 1.19881 1.22618 1.00625 0.94196 0.88454 1.60156 1.01437 1.54892 1.03391 1.23622 0.90512 0.96485 0.97837 1.21376 0.94898 0.94456 0.99069 0.89107 1.22343 0.99830 0.87199 0.90019 1.86444 1.96019 1.17931 1.37212 1.20822 0.96544 0.98543 0.97574 1.20365 0.94366 0.98646 0.96006 1.20979 0.94878 1.00381 1.00176 1.20888 0.99536 0.97759 0.94102 1.20508 0.93209 1.01779 0.98252 1.19733 0.93379 0.93950 0.92515 0.94343 0.93816 0.91374 0.92389 0.94398 0.93858 0.96975 0.96684 0.93147 0.91219 0.93979 0.87562 0.89258 0.92913 0.93087 0.77533 0.86440 0.86264 0.85987 0.85889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 6.75 37.16 0.25 -2.18 16 2 C -0.05 -1.05 0.61 -154.51 -0.09 -1.15 16 3 C -0.12 -2.22 7.99 37.16 0.30 -1.92 16 4 C 0.03 0.84 4.04 -27.89 -0.11 0.73 16 5 C -0.51 -13.58 7.48 -34.44 -0.26 -13.84 16 6 H 0.06 1.56 5.73 -52.48 -0.30 1.26 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.29 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 C 0.07 1.14 4.00 -3.82 -0.02 1.12 16 14 N -0.48 -7.43 4.04 -169.01 -0.68 -8.11 16 15 C 0.04 0.56 5.15 -2.42 -0.01 0.55 16 16 C -0.08 -1.00 3.31 -90.49 -0.30 -1.30 16 17 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 18 C 0.08 1.02 6.20 37.16 0.23 1.25 16 19 O -0.57 -6.66 13.48 -35.23 -0.47 -7.13 16 20 C -0.13 -1.87 5.40 -104.04 -0.56 -2.43 16 21 C -0.08 -0.98 10.03 -39.67 -0.40 -1.38 16 22 C -0.15 -1.72 10.06 -39.54 -0.40 -2.12 16 23 C -0.10 -1.27 10.02 -39.68 -0.40 -1.66 16 24 C -0.12 -1.66 10.02 -39.26 -0.39 -2.05 16 25 C 0.10 1.52 5.45 -83.41 -0.45 1.07 16 26 H 0.04 0.64 7.50 -51.93 -0.39 0.26 16 27 H 0.04 0.67 6.06 -51.93 -0.31 0.36 16 28 H 0.07 1.34 6.39 -51.93 -0.33 1.01 16 29 H 0.06 1.20 6.48 -51.93 -0.34 0.86 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.04 0.76 7.62 -51.93 -0.40 0.36 16 32 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.07 1.29 7.84 -51.93 -0.41 0.88 16 36 H 0.04 0.72 5.21 -51.93 -0.27 0.45 16 37 H 0.11 1.39 4.25 -51.93 -0.22 1.17 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.05 0.73 5.76 -51.93 -0.30 0.43 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.38 2.84 9.12 45.56 0.42 3.25 16 42 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 44 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 45 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 344.99 15.07 5.20 5.20 Total: -1.00 -30.52 344.99 -9.17 -39.69 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -6.21 Total: 3.68 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -2.71 Total: -23.86 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.05 Total: -33.86 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.47 Total: -7.13 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.52 -9.17 -39.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293957433.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.322 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds