Wall clock time and date at job start Tue Mar 31 2020 06:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47381 * 2 1 4 4 C 1.53002 * 109.46994 * 120.00157 * 2 1 3 5 5 C 1.50694 * 109.47086 * 299.99473 * 4 2 1 6 6 H 1.08004 * 120.00232 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00128 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00066 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00232 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47254 * 89.99760 * 9 7 5 11 11 H 1.48503 * 109.47147 * 209.99843 * 9 7 5 12 12 H 1.48500 * 109.46874 * 329.99680 * 9 7 5 13 13 C 1.53003 * 109.46795 * 239.99769 * 2 1 3 14 14 N 1.46898 * 109.47109 * 65.70169 * 13 2 1 15 15 C 1.47910 * 111.00053 * 277.96065 * 14 13 2 16 16 C 1.54609 * 102.62414 * 265.47913 * 15 14 13 17 17 H 1.08995 * 110.73947 * 216.12727 * 16 15 14 18 18 C 1.52999 * 110.89489 * 92.87000 * 16 15 14 19 19 O 1.42901 * 109.46820 * 180.57361 * 18 16 15 20 20 C 1.51577 * 102.82924 * 334.46523 * 16 15 14 21 21 C 1.37926 * 131.55613 * 196.33470 * 20 16 15 22 22 C 1.38298 * 120.07987 * 179.27605 * 21 20 16 23 23 C 1.38299 * 119.88466 * 0.02562 * 22 21 20 24 24 C 1.37916 * 120.26498 * 0.13879 * 23 22 21 25 25 C 1.38957 * 107.95772 * 15.94223 * 20 16 15 26 26 H 1.08993 * 109.47459 * 171.94101 * 1 2 3 27 27 H 1.09000 * 109.47154 * 51.93612 * 1 2 3 28 28 H 1.09002 * 109.46624 * 291.93895 * 1 2 3 29 29 H 1.08999 * 109.47261 * 64.70639 * 3 2 1 30 30 H 1.09000 * 109.47209 * 184.71048 * 3 2 1 31 31 H 1.09001 * 109.46945 * 304.70171 * 3 2 1 32 32 H 1.09000 * 109.47231 * 59.99587 * 4 2 1 33 33 H 1.09003 * 109.46990 * 179.97438 * 4 2 1 34 34 H 0.96996 * 120.00320 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.46900 * 185.70165 * 13 2 1 36 36 H 1.08996 * 109.47053 * 305.70010 * 13 2 1 37 37 H 1.08996 * 110.77872 * 23.75854 * 15 14 13 38 38 H 1.08995 * 110.78328 * 147.19772 * 15 14 13 39 39 H 1.09000 * 109.47007 * 300.56742 * 18 16 15 40 40 H 1.08994 * 109.47339 * 60.57249 * 18 16 15 41 41 H 0.96701 * 113.99902 * 180.02562 * 19 18 16 42 42 H 1.08001 * 119.95563 * 359.29202 * 21 20 16 43 43 H 1.08003 * 120.05943 * 179.97438 * 22 21 20 44 44 H 1.08004 * 119.87309 * 180.11711 * 23 22 21 45 45 H 1.08000 * 119.89998 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5378 -0.0109 2.4797 6 1 0.9165 0.8671 2.3806 7 6 1.8712 -0.4816 3.7319 8 7 2.6272 -1.5509 3.8526 9 14 1.2481 0.3986 5.2572 10 1 -0.0597 -0.1772 5.6615 11 1 2.2264 0.2285 6.3613 12 1 1.0822 1.8444 4.9612 13 6 2.0399 -0.7213 -1.2493 14 7 1.6658 0.0460 -2.4447 15 6 0.2708 -0.2412 -2.8439 16 6 0.4444 -1.3572 -3.8997 17 1 -0.2904 -1.2512 -4.6977 18 6 0.3438 -2.7403 -3.2534 19 8 0.5215 -3.7468 -4.2522 20 6 1.8452 -1.1101 -4.4234 21 6 2.4890 -1.5546 -5.5594 22 6 3.7903 -1.1633 -5.8167 23 6 4.4456 -0.3257 -4.9326 24 6 3.8075 0.1189 -3.7935 25 6 2.4966 -0.2727 -3.5260 26 1 -0.3634 -1.0174 -0.1441 27 1 -0.3633 0.6336 -0.8091 28 1 -0.3633 0.3840 0.9533 29 1 1.7472 1.9314 0.9291 30 1 3.1268 1.4436 -0.0844 31 1 1.6096 1.9800 -0.8449 32 1 1.6766 -1.7489 1.2493 33 1 3.1300 -0.7217 1.2490 34 1 2.8622 -1.8819 4.7336 35 1 3.1252 -0.8106 -1.1997 36 1 1.5956 -1.7152 -1.3017 37 1 -0.3086 -0.6004 -1.9934 38 1 -0.1943 0.6400 -3.2856 39 1 1.1175 -2.8430 -2.4925 40 1 -0.6370 -2.8554 -2.7922 41 1 0.4696 -4.6509 -3.9131 42 1 1.9761 -2.2088 -6.2489 43 1 4.2942 -1.5119 -6.7061 44 1 5.4611 -0.0187 -5.1346 45 1 4.3247 0.7732 -3.1074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293957433.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:14 Heat of formation + Delta-G solvation = -34.047782 kcal Electronic energy + Delta-G solvation = -23984.928040 eV Core-core repulsion = 20773.440230 eV Total energy + Delta-G solvation = -3211.487810 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.13539 -38.87189 -37.87290 -36.70302 -34.47404 -33.14848 -30.56491 -30.42811 -28.83380 -28.30349 -27.68258 -25.60845 -24.47183 -23.65115 -21.92007 -21.44458 -19.64785 -18.37364 -18.30417 -17.52977 -17.26209 -16.59020 -16.26248 -16.00892 -15.54195 -15.35250 -15.13027 -14.87539 -14.44315 -14.27539 -13.93691 -13.82841 -13.66576 -13.42913 -13.25528 -12.99275 -12.81076 -12.67649 -12.44807 -12.36717 -12.19559 -12.11712 -11.97242 -11.81709 -11.69180 -11.32413 -10.95113 -10.87916 -10.84454 -10.49765 -10.17111 -9.68821 -8.79897 -8.13438 -6.20222 0.41526 0.50497 1.41591 1.42393 1.52821 2.43936 2.68310 2.90152 3.15553 3.20819 3.57313 3.91604 3.97456 4.03549 4.15403 4.21867 4.24615 4.28273 4.40430 4.43572 4.49615 4.57547 4.68778 4.74436 4.76984 4.83453 4.87002 4.93584 5.06825 5.07281 5.14243 5.21055 5.23151 5.47289 5.50668 5.54486 5.56688 5.60053 5.64030 5.68571 5.83190 5.90176 5.93076 6.05007 6.33775 6.41608 6.80497 6.94415 7.47104 8.98901 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022412 B = 0.004187 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.008820 B = 6685.411523 C = 7105.884305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.049 4.049 3 C -0.106 4.106 4 C 0.042 3.958 5 C -0.512 4.512 6 H 0.067 0.933 7 C -0.002 4.002 8 N -0.938 5.938 9 Si 0.954 3.046 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.263 1.263 13 C 0.080 3.920 14 N -0.486 5.486 15 C 0.041 3.959 16 C -0.075 4.075 17 H 0.103 0.897 18 C 0.087 3.913 19 O -0.581 6.581 20 C -0.141 4.141 21 C -0.086 4.086 22 C -0.139 4.139 23 C -0.106 4.106 24 C -0.133 4.133 25 C 0.073 3.927 26 H 0.045 0.955 27 H 0.072 0.928 28 H 0.048 0.952 29 H 0.041 0.959 30 H 0.027 0.973 31 H 0.064 0.936 32 H -0.014 1.014 33 H -0.019 1.019 34 H 0.259 0.741 35 H 0.049 0.951 36 H 0.042 0.958 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.031 0.969 40 H 0.067 0.933 41 H 0.395 0.605 42 H 0.128 0.872 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.348 -0.075 -19.189 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.049 4.049 3 C -0.163 4.163 4 C 0.004 3.996 5 C -0.550 4.550 6 H 0.085 0.915 7 C -0.199 4.199 8 N -0.579 5.579 9 Si 0.780 3.220 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.188 1.188 13 C -0.045 4.045 14 N -0.202 5.202 15 C -0.086 4.086 16 C -0.095 4.095 17 H 0.121 0.879 18 C 0.009 3.991 19 O -0.389 6.389 20 C -0.143 4.143 21 C -0.104 4.104 22 C -0.157 4.157 23 C -0.124 4.124 24 C -0.153 4.153 25 C -0.023 4.023 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.005 0.995 33 H -0.001 1.001 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.049 0.951 40 H 0.085 0.915 41 H 0.244 0.756 42 H 0.146 0.854 43 H 0.167 0.833 44 H 0.166 0.834 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.187 0.893 -19.242 19.524 hybrid contribution 0.043 -1.184 1.515 1.924 sum -3.145 -0.291 -17.726 18.006 Atomic orbital electron populations 1.21961 0.94386 1.00538 1.01685 1.20457 0.96190 0.95891 0.92409 1.21487 0.98942 0.95465 1.00411 1.18977 0.93903 0.94129 0.92577 1.21591 1.30202 1.11926 0.91300 0.91477 1.25886 0.95661 0.95866 1.02477 1.70105 1.38818 1.24987 1.24007 0.85600 0.77993 0.79396 0.79007 1.19967 1.21419 1.18754 1.22280 0.99173 0.94223 0.88853 1.60099 1.02663 1.54589 1.02887 1.23703 0.89272 0.97434 0.98150 1.21373 0.94548 0.94464 0.99103 0.87904 1.22252 0.99880 0.87318 0.89601 1.86396 1.96037 1.19080 1.37351 1.21048 0.97168 0.98344 0.97756 1.20618 0.95031 0.98843 0.95917 1.21363 0.94450 0.99186 1.00744 1.21209 1.00631 0.97284 0.93269 1.20726 0.93256 1.02210 0.99146 1.19882 0.94067 0.95543 0.92845 0.93598 0.90887 0.93325 0.94037 0.95367 0.91754 0.99523 1.00076 0.93197 0.93278 0.93982 0.87469 0.87797 0.95058 0.91497 0.75573 0.85418 0.83341 0.83441 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.47 6.75 71.98 0.49 -3.99 16 2 C -0.05 -1.93 0.61 -52.18 -0.03 -1.96 16 3 C -0.11 -4.07 7.99 71.98 0.58 -3.50 16 4 C 0.04 2.14 4.04 29.85 0.12 2.26 16 5 C -0.51 -27.97 7.48 25.60 0.19 -27.78 16 6 H 0.07 3.51 5.73 -2.91 -0.02 3.49 16 7 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 8 N -0.94 -56.93 13.29 21.45 0.28 -56.64 16 9 Si 0.95 44.03 29.54 68.60 2.03 46.06 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 13 C 0.08 2.82 4.00 86.30 0.35 3.17 16 14 N -0.49 -14.62 4.04 -688.64 -2.78 -17.40 16 15 C 0.04 1.00 5.15 86.66 0.45 1.45 16 16 C -0.08 -1.79 3.31 -10.71 -0.04 -1.83 16 17 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 18 C 0.09 2.01 6.20 71.98 0.45 2.46 16 19 O -0.58 -12.54 13.48 -148.98 -2.01 -14.55 16 20 C -0.14 -3.78 5.40 -19.49 -0.11 -3.88 16 21 C -0.09 -2.06 10.03 22.21 0.22 -1.84 16 22 C -0.14 -2.94 10.06 22.30 0.22 -2.72 16 23 C -0.11 -2.37 10.02 22.21 0.22 -2.15 16 24 C -0.13 -3.70 10.02 22.47 0.23 -3.47 16 25 C 0.07 2.15 5.45 38.28 0.21 2.36 16 26 H 0.05 1.50 7.50 -2.39 -0.02 1.48 16 27 H 0.07 2.10 6.06 -2.39 -0.01 2.09 16 28 H 0.05 1.87 6.39 -2.39 -0.02 1.86 16 29 H 0.04 1.71 6.48 -2.39 -0.02 1.69 16 30 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 2.19 7.62 -2.39 -0.02 2.17 16 32 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 33 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 34 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 35 H 0.05 1.90 7.84 -2.38 -0.02 1.88 16 36 H 0.04 1.47 5.21 -2.39 -0.01 1.46 16 37 H 0.11 2.59 4.25 -2.39 -0.01 2.58 16 38 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.03 0.86 5.76 -2.39 -0.01 0.84 16 40 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.39 5.30 9.12 -74.06 -0.68 4.63 16 42 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 43 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 44 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 45 H 0.12 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -66.51 344.99 1.84 -64.67 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.31 Total: 18.92 kcal Atomic # 6 Polarization: -45.07 SS G_CDS: 4.00 Total: -41.07 kcal Atomic # 7 Polarization: -71.54 SS G_CDS: -2.50 Total: -74.04 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -2.01 Total: -14.55 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -66.51 1.84 -64.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293957433.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.626 kcal (2) G-P(sol) polarization free energy of solvation -66.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds