Wall clock time and date at job start Tue Mar 31 2020 06:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47061 * 2 1 4 4 N 1.46892 * 110.01875 * 57.83800 * 3 2 1 5 5 C 1.46898 * 111.00406 * 59.07596 * 4 3 2 6 6 C 1.50701 * 109.47554 * 177.75761 * 5 4 3 7 7 C 1.38301 * 119.92903 * 270.25538 * 6 5 4 8 8 C 1.38103 * 120.06527 * 180.25613 * 7 6 5 9 9 C 1.38880 * 119.92939 * 359.46970 * 8 7 6 10 10 O 1.35752 * 120.06970 * 180.30031 * 9 8 7 11 11 C 1.34835 * 116.99742 * 354.68038 * 10 9 8 12 12 H 1.07997 * 119.99725 * 4.60927 * 11 10 9 13 13 C 1.38659 * 119.99668 * 184.61404 * 11 10 9 14 14 N 1.31549 * 120.00027 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99658 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47368 * 90.00134 * 15 13 11 17 17 H 1.48502 * 109.46884 * 210.00138 * 15 13 11 18 18 H 1.48505 * 109.47414 * 329.99827 * 15 13 11 19 19 C 1.38885 * 119.86244 * 0.27585 * 9 8 7 20 20 C 1.38091 * 119.92973 * 359.97438 * 19 9 8 21 21 C 1.53877 * 110.07400 * 179.25458 * 3 2 1 22 22 C 1.54272 * 106.59871 * 119.30444 * 21 3 2 23 23 C 1.54893 * 104.19495 * 23.61260 * 22 21 3 24 24 C 1.54271 * 110.03178 * 296.44736 * 3 2 1 25 25 H 1.08994 * 109.47198 * 303.11956 * 1 2 3 26 26 H 1.09001 * 109.46946 * 63.12301 * 1 2 3 27 27 H 1.08999 * 109.47080 * 183.11304 * 1 2 3 28 28 H 1.08995 * 109.47371 * 240.00038 * 2 1 3 29 29 H 1.09001 * 109.47146 * 119.99709 * 2 1 3 30 30 H 1.00900 * 111.00137 * 295.11859 * 4 3 2 31 31 H 1.09002 * 109.46689 * 57.75876 * 5 4 3 32 32 H 1.08994 * 109.47164 * 297.76416 * 5 4 3 33 33 H 1.08003 * 119.97008 * 0.02562 * 7 6 5 34 34 H 1.07996 * 120.03499 * 179.74371 * 8 7 6 35 35 H 0.96995 * 120.00140 * 179.97438 * 14 13 11 36 36 H 1.07999 * 120.03422 * 180.02562 * 19 9 8 37 37 H 1.08004 * 119.96878 * 179.97438 * 20 19 9 38 38 H 1.08995 * 110.03542 * 238.58447 * 21 3 2 39 39 H 1.08995 * 110.03132 * 0.02709 * 21 3 2 40 40 H 1.08999 * 110.48783 * 264.93692 * 22 21 3 41 41 H 1.08996 * 110.48713 * 142.28768 * 22 21 3 42 42 H 1.09004 * 110.75625 * 203.74638 * 23 22 21 43 43 H 1.08993 * 110.75773 * 80.37125 * 23 22 21 44 44 H 1.09004 * 110.48317 * 335.73142 * 24 3 2 45 45 H 1.08994 * 110.48535 * 98.37789 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.5149 2.1615 1.1684 5 6 1.9238 1.5057 2.4176 6 6 1.4143 2.3004 3.5924 7 6 2.1913 3.3092 4.1321 8 6 1.7294 4.0357 5.2120 9 6 0.4786 3.7597 5.7489 10 8 0.0192 4.4761 6.8065 11 6 0.8687 5.3659 7.3584 12 1 1.8371 5.5366 6.9118 13 6 0.4990 6.0616 8.4994 14 7 -0.6808 5.8540 9.0430 15 14 1.6761 7.2938 9.2644 16 1 1.4428 8.6352 8.6716 17 1 1.4463 7.3536 10.7303 18 1 3.0752 6.8722 8.9996 19 6 -0.3014 2.7495 5.2012 20 6 0.1683 2.0232 4.1247 21 6 3.5785 1.4587 0.0188 22 6 4.0274 2.1814 -1.2682 23 6 2.8126 3.0620 -1.6527 24 6 1.6075 2.1559 -1.2977 25 1 -0.3633 0.5615 0.8607 26 1 -0.3633 0.4646 -0.9167 27 1 -0.3633 -1.0261 0.0558 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.5110 2.2492 1.1179 31 1 3.0117 1.4514 2.4602 32 1 1.5082 0.4988 2.4524 33 1 3.1618 3.5266 3.7111 34 1 2.3382 4.8206 5.6357 35 1 -0.9393 6.3404 9.8414 36 1 -1.2746 2.5327 5.6162 37 1 -0.4376 1.2372 3.6986 38 1 3.9356 2.0002 0.8948 39 1 3.9626 0.4387 0.0275 40 1 4.2400 1.4595 -2.0567 41 1 4.9016 2.8021 -1.0720 42 1 2.8231 3.2906 -2.7184 43 1 2.7957 3.9768 -1.0604 44 1 1.4294 1.4298 -2.0910 45 1 0.7159 2.7579 -1.1230 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294451125.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:53 Heat of formation + Delta-G solvation = -20.099355 kcal Electronic energy + Delta-G solvation = -22850.776512 eV Core-core repulsion = 19639.893551 eV Total energy + Delta-G solvation = -3210.882961 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.77249 -38.86585 -36.67428 -34.46985 -32.49897 -31.95910 -30.12847 -29.25712 -28.93619 -26.86679 -25.46720 -23.95780 -22.84848 -21.92761 -20.94411 -20.18974 -18.72712 -17.94925 -16.92227 -16.04350 -15.61468 -15.48441 -14.87105 -14.53816 -14.37643 -14.09288 -13.78827 -13.48187 -13.32582 -13.25675 -12.89971 -12.77711 -12.62088 -12.14489 -11.87709 -11.65286 -11.47343 -11.28297 -11.18778 -11.10756 -10.98967 -10.85115 -10.80811 -10.64792 -10.62046 -10.45705 -10.41370 -10.37869 -9.29791 -8.81004 -8.22805 -8.12231 -7.13996 -6.42949 -4.01560 2.25913 2.33980 3.14300 3.15132 3.19984 3.98722 4.23568 4.40844 4.55053 4.66231 4.84400 4.98046 5.03081 5.12430 5.13658 5.28398 5.34988 5.39825 5.47147 5.47803 5.56462 5.58964 5.67912 5.75199 5.77108 5.79862 5.86023 5.87527 5.90795 5.96700 6.04004 6.09390 6.11760 6.17828 6.25265 6.32599 6.47441 6.74231 6.95231 7.08167 7.23945 7.27489 7.45108 7.47753 7.59199 7.87135 8.02516 9.02964 9.73642 10.75281 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026475 B = 0.003122 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.334345 B = 8965.506378 C = 9614.552400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.151 4.151 3 C 0.111 3.889 4 N -0.669 5.669 5 C 0.113 3.887 6 C -0.181 4.181 7 C -0.050 4.050 8 C -0.235 4.235 9 C 0.155 3.845 10 O -0.179 6.179 11 C -0.391 4.391 12 H 0.092 0.908 13 C 0.039 3.961 14 N -0.864 5.864 15 Si 0.940 3.060 16 H -0.273 1.273 17 H -0.278 1.278 18 H -0.267 1.267 19 C -0.194 4.194 20 C -0.069 4.069 21 C -0.115 4.115 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.110 4.110 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.340 0.660 31 H 0.070 0.930 32 H 0.030 0.970 33 H 0.106 0.894 34 H 0.126 0.874 35 H 0.270 0.730 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.215 -9.301 -18.795 21.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.190 4.190 3 C 0.020 3.980 4 N -0.301 5.301 5 C -0.015 4.015 6 C -0.182 4.182 7 C -0.068 4.068 8 C -0.254 4.254 9 C 0.101 3.899 10 O -0.083 6.083 11 C -0.467 4.467 12 H 0.109 0.891 13 C -0.165 4.165 14 N -0.499 5.499 15 Si 0.765 3.235 16 H -0.199 1.199 17 H -0.203 1.203 18 H -0.192 1.192 19 C -0.213 4.213 20 C -0.088 4.088 21 C -0.153 4.153 22 C -0.159 4.159 23 C -0.157 4.157 24 C -0.148 4.148 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.160 0.840 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.124 0.876 34 H 0.143 0.857 35 H 0.079 0.921 36 H 0.133 0.867 37 H 0.124 0.876 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.379 -8.750 -18.442 21.386 hybrid contribution -0.006 -0.176 0.449 0.482 sum 6.372 -8.926 -17.993 21.072 Atomic orbital electron populations 1.21806 0.95826 1.01656 1.02008 1.22292 0.96342 0.98264 1.02088 1.21609 0.94606 0.90691 0.91123 1.60840 1.17139 1.51732 1.00373 1.20665 0.99785 0.93961 0.87049 1.19145 0.96648 1.02140 1.00316 1.20559 0.98146 0.93815 0.94320 1.21166 0.98214 1.05083 1.00984 1.19389 0.91797 0.90302 0.88363 1.83975 1.39661 1.46247 1.38387 1.21332 0.98542 1.17441 1.09431 0.89072 1.25280 0.97183 0.98343 0.95723 1.70035 1.19103 1.40258 1.20509 0.85719 0.79538 0.79821 0.78405 1.19880 1.20280 1.19189 1.20158 1.01264 0.99136 1.00757 1.20462 0.94835 0.98169 0.95362 1.22283 0.94026 1.00129 0.98832 1.22303 0.98056 0.98429 0.97105 1.22426 0.94384 0.98677 1.00191 1.22402 0.98552 0.98189 0.95622 0.92546 0.92516 0.92854 0.91874 0.91766 0.83997 0.91138 0.95211 0.87617 0.85675 0.92059 0.86714 0.87639 0.90492 0.92231 0.92233 0.91897 0.92256 0.90906 0.91719 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.38 37.16 0.35 -1.03 16 2 C -0.15 -1.38 4.15 -26.73 -0.11 -1.49 16 3 C 0.11 1.11 0.57 -130.48 -0.07 1.04 16 4 N -0.67 -8.19 5.84 -100.09 -0.58 -8.78 16 5 C 0.11 1.52 5.05 -4.98 -0.03 1.49 16 6 C -0.18 -3.08 5.42 -104.57 -0.57 -3.64 16 7 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 8 C -0.24 -5.19 9.17 -39.39 -0.36 -5.56 16 9 C 0.16 3.80 6.65 -39.10 -0.26 3.54 16 10 O -0.18 -5.18 9.76 0.03 0.00 -5.18 16 11 C -0.39 -11.06 9.49 30.89 0.29 -10.77 16 12 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 13 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 14 N -0.86 -25.56 13.67 55.48 0.76 -24.80 16 15 Si 0.94 20.71 29.55 -169.99 -5.02 15.69 16 16 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 17 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 19 C -0.19 -4.13 9.99 -39.40 -0.39 -4.53 16 20 C -0.07 -1.23 9.69 -39.61 -0.38 -1.62 16 21 C -0.11 -1.14 5.58 -25.61 -0.14 -1.28 16 22 C -0.12 -1.07 6.83 -25.07 -0.17 -1.24 16 23 C -0.12 -1.10 6.91 -24.73 -0.17 -1.27 16 24 C -0.11 -1.02 5.09 -25.07 -0.13 -1.14 16 25 H 0.06 0.55 6.63 -51.93 -0.34 0.21 16 26 H 0.06 0.47 7.42 -51.93 -0.39 0.08 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 29 H 0.06 0.63 6.61 -51.93 -0.34 0.29 16 30 H 0.34 4.23 6.95 -39.29 -0.27 3.96 16 31 H 0.07 0.93 6.36 -51.93 -0.33 0.60 16 32 H 0.03 0.38 6.45 -51.93 -0.33 0.05 16 33 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 34 H 0.13 2.78 5.64 -52.49 -0.30 2.49 16 35 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 36 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 37 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 38 H 0.08 0.87 6.56 -51.93 -0.34 0.53 16 39 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.54 7.77 -51.93 -0.40 0.13 16 45 H 0.07 0.67 7.92 -51.93 -0.41 0.26 16 LS Contribution 351.76 15.07 5.30 5.30 Total: -1.00 -29.71 351.76 -9.25 -38.96 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -7.07 Total: 6.65 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: -2.63 Total: -27.83 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.17 Total: -33.58 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: 0.00 Total: -5.18 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.71 -9.25 -38.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294451125.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.857 kcal (2) G-P(sol) polarization free energy of solvation -29.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds