Wall clock time and date at job start Tue Mar 31 2020 06:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47061 * 2 1 4 4 N 1.46892 * 110.01875 * 57.83800 * 3 2 1 5 5 C 1.46898 * 111.00406 * 59.07596 * 4 3 2 6 6 C 1.50701 * 109.47554 * 177.75761 * 5 4 3 7 7 C 1.38301 * 119.92903 * 270.25538 * 6 5 4 8 8 C 1.38103 * 120.06527 * 180.25613 * 7 6 5 9 9 C 1.38880 * 119.92939 * 359.46970 * 8 7 6 10 10 O 1.35752 * 120.06970 * 180.30031 * 9 8 7 11 11 C 1.34835 * 116.99742 * 354.68038 * 10 9 8 12 12 H 1.07997 * 119.99725 * 4.60927 * 11 10 9 13 13 C 1.38659 * 119.99668 * 184.61404 * 11 10 9 14 14 N 1.31549 * 120.00027 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99658 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47368 * 90.00134 * 15 13 11 17 17 H 1.48502 * 109.46884 * 210.00138 * 15 13 11 18 18 H 1.48505 * 109.47414 * 329.99827 * 15 13 11 19 19 C 1.38885 * 119.86244 * 0.27585 * 9 8 7 20 20 C 1.38091 * 119.92973 * 359.97438 * 19 9 8 21 21 C 1.53877 * 110.07400 * 179.25458 * 3 2 1 22 22 C 1.54272 * 106.59871 * 119.30444 * 21 3 2 23 23 C 1.54893 * 104.19495 * 23.61260 * 22 21 3 24 24 C 1.54271 * 110.03178 * 296.44736 * 3 2 1 25 25 H 1.08994 * 109.47198 * 303.11956 * 1 2 3 26 26 H 1.09001 * 109.46946 * 63.12301 * 1 2 3 27 27 H 1.08999 * 109.47080 * 183.11304 * 1 2 3 28 28 H 1.08995 * 109.47371 * 240.00038 * 2 1 3 29 29 H 1.09001 * 109.47146 * 119.99709 * 2 1 3 30 30 H 1.00900 * 111.00137 * 295.11859 * 4 3 2 31 31 H 1.09002 * 109.46689 * 57.75876 * 5 4 3 32 32 H 1.08994 * 109.47164 * 297.76416 * 5 4 3 33 33 H 1.08003 * 119.97008 * 0.02562 * 7 6 5 34 34 H 1.07996 * 120.03499 * 179.74371 * 8 7 6 35 35 H 0.96995 * 120.00140 * 179.97438 * 14 13 11 36 36 H 1.07999 * 120.03422 * 180.02562 * 19 9 8 37 37 H 1.08004 * 119.96878 * 179.97438 * 20 19 9 38 38 H 1.08995 * 110.03542 * 238.58447 * 21 3 2 39 39 H 1.08995 * 110.03132 * 0.02709 * 21 3 2 40 40 H 1.08999 * 110.48783 * 264.93692 * 22 21 3 41 41 H 1.08996 * 110.48713 * 142.28768 * 22 21 3 42 42 H 1.09004 * 110.75625 * 203.74638 * 23 22 21 43 43 H 1.08993 * 110.75773 * 80.37125 * 23 22 21 44 44 H 1.09004 * 110.48317 * 335.73142 * 24 3 2 45 45 H 1.08994 * 110.48535 * 98.37789 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.5149 2.1615 1.1684 5 6 1.9238 1.5057 2.4176 6 6 1.4143 2.3004 3.5924 7 6 2.1913 3.3092 4.1321 8 6 1.7294 4.0357 5.2120 9 6 0.4786 3.7597 5.7489 10 8 0.0192 4.4761 6.8065 11 6 0.8687 5.3659 7.3584 12 1 1.8371 5.5366 6.9118 13 6 0.4990 6.0616 8.4994 14 7 -0.6808 5.8540 9.0430 15 14 1.6761 7.2938 9.2644 16 1 1.4428 8.6352 8.6716 17 1 1.4463 7.3536 10.7303 18 1 3.0752 6.8722 8.9996 19 6 -0.3014 2.7495 5.2012 20 6 0.1683 2.0232 4.1247 21 6 3.5785 1.4587 0.0188 22 6 4.0274 2.1814 -1.2682 23 6 2.8126 3.0620 -1.6527 24 6 1.6075 2.1559 -1.2977 25 1 -0.3633 0.5615 0.8607 26 1 -0.3633 0.4646 -0.9167 27 1 -0.3633 -1.0261 0.0558 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.5110 2.2492 1.1179 31 1 3.0117 1.4514 2.4602 32 1 1.5082 0.4988 2.4524 33 1 3.1618 3.5266 3.7111 34 1 2.3382 4.8206 5.6357 35 1 -0.9393 6.3404 9.8414 36 1 -1.2746 2.5327 5.6162 37 1 -0.4376 1.2372 3.6986 38 1 3.9356 2.0002 0.8948 39 1 3.9626 0.4387 0.0275 40 1 4.2400 1.4595 -2.0567 41 1 4.9016 2.8021 -1.0720 42 1 2.8231 3.2906 -2.7184 43 1 2.7957 3.9768 -1.0604 44 1 1.4294 1.4298 -2.0910 45 1 0.7159 2.7579 -1.1230 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294451125.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:52 Heat of formation + Delta-G solvation = -36.865427 kcal Electronic energy + Delta-G solvation = -22851.503544 eV Core-core repulsion = 19639.893551 eV Total energy + Delta-G solvation = -3211.609992 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.91915 -40.31947 -38.34417 -35.44693 -34.29917 -33.11939 -31.77081 -30.58359 -29.67470 -27.91690 -27.28176 -25.23557 -23.63897 -23.55985 -22.12949 -21.31607 -19.83049 -19.53546 -18.81297 -17.01013 -16.64418 -16.50372 -16.23498 -16.05616 -15.64677 -15.49068 -15.36390 -14.82846 -14.66161 -14.37276 -14.15490 -14.03572 -13.63505 -13.56296 -13.05083 -13.00560 -12.84086 -12.53151 -12.34594 -12.22425 -12.12634 -11.98433 -11.87973 -11.79040 -11.69331 -11.50508 -11.32541 -11.27010 -11.15766 -10.78311 -9.76180 -9.19590 -8.86588 -8.47065 -6.15053 0.61715 0.70315 1.34758 1.44065 1.52357 2.18028 2.80022 3.12700 3.48246 3.53925 3.66620 3.82301 4.03448 4.06716 4.15011 4.21624 4.30483 4.34427 4.43219 4.49880 4.61756 4.65636 4.69175 4.75967 4.84790 4.85411 4.91011 4.97398 5.05399 5.09891 5.12769 5.16205 5.16998 5.22776 5.30809 5.31870 5.35584 5.36703 5.45162 5.58608 5.60514 5.73226 5.85135 6.03601 6.22022 6.34007 6.61041 6.97837 7.79128 8.76386 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026475 B = 0.003122 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.334345 B = 8965.506378 C = 9614.552400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.146 4.146 3 C 0.112 3.888 4 N -0.678 5.678 5 C 0.120 3.880 6 C -0.154 4.154 7 C -0.051 4.051 8 C -0.244 4.244 9 C 0.113 3.887 10 O -0.234 6.234 11 C -0.414 4.414 12 H 0.100 0.900 13 C -0.023 4.023 14 N -0.922 5.922 15 Si 1.018 2.982 16 H -0.263 1.263 17 H -0.270 1.270 18 H -0.253 1.253 19 C -0.204 4.204 20 C -0.060 4.060 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.108 4.108 25 H 0.046 0.954 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.340 0.660 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.132 0.868 34 H 0.116 0.884 35 H 0.273 0.727 36 H 0.112 0.888 37 H 0.144 0.856 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.079 0.921 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.964 -10.734 -21.519 25.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.186 4.186 3 C 0.021 3.979 4 N -0.310 5.310 5 C -0.008 4.008 6 C -0.155 4.155 7 C -0.070 4.070 8 C -0.263 4.263 9 C 0.063 3.937 10 O -0.140 6.140 11 C -0.490 4.490 12 H 0.118 0.882 13 C -0.220 4.220 14 N -0.560 5.560 15 Si 0.837 3.163 16 H -0.188 1.188 17 H -0.195 1.195 18 H -0.177 1.177 19 C -0.224 4.224 20 C -0.079 4.079 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.158 4.158 24 C -0.145 4.145 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.160 0.840 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.150 0.850 34 H 0.133 0.867 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.162 0.838 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.146 -10.219 -21.226 24.927 hybrid contribution -0.514 0.037 0.966 1.095 sum 7.633 -10.182 -20.260 23.925 Atomic orbital electron populations 1.21800 0.95619 1.01950 1.01869 1.22248 0.96445 0.97380 1.02481 1.21667 0.94672 0.91195 0.90350 1.60781 1.17247 1.52369 1.00580 1.20611 1.00277 0.93885 0.86026 1.19656 0.95463 1.00285 1.00070 1.20873 0.99432 0.93516 0.93131 1.21248 0.97460 1.05541 1.02073 1.19932 0.93610 0.91643 0.88508 1.83937 1.41108 1.48200 1.40796 1.21817 0.99106 1.17930 1.10150 0.88250 1.26583 0.99151 1.00388 0.95907 1.70179 1.21631 1.42538 1.21639 0.84594 0.77361 0.76897 0.77408 1.18785 1.19490 1.17699 1.20427 1.01156 0.98994 1.01787 1.20854 0.95387 0.97932 0.93682 1.22302 0.93829 1.00626 0.98692 1.22304 0.97768 0.98542 0.97032 1.22420 0.94671 0.98000 1.00700 1.22402 0.98183 0.98344 0.95603 0.93503 0.91983 0.92257 0.90679 0.92187 0.84039 0.90288 0.93606 0.84983 0.86659 0.91837 0.87014 0.83831 0.92036 0.91216 0.90816 0.91983 0.91010 0.92722 0.90249 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.38 71.98 0.68 -1.56 16 2 C -0.15 -2.14 4.15 30.59 0.13 -2.01 16 3 C 0.11 1.88 0.57 4.26 0.00 1.88 16 4 N -0.68 -14.55 5.84 -470.58 -2.75 -17.30 16 5 C 0.12 2.79 5.05 85.56 0.43 3.22 16 6 C -0.15 -4.82 5.42 -19.83 -0.11 -4.93 16 7 C -0.05 -1.83 9.69 22.25 0.22 -1.61 16 8 C -0.24 -10.97 9.17 22.39 0.21 -10.77 16 9 C 0.11 5.78 6.65 22.58 0.15 5.93 16 10 O -0.23 -14.39 9.76 -22.81 -0.22 -14.61 16 11 C -0.41 -24.64 9.49 67.92 0.64 -24.00 16 12 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 13 C -0.02 -1.33 5.49 84.84 0.47 -0.86 16 14 N -0.92 -57.40 13.67 21.61 0.30 -57.10 16 15 Si 1.02 43.57 29.55 68.60 2.03 45.60 16 16 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 17 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 18 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 19 C -0.20 -8.83 9.99 22.39 0.22 -8.61 16 20 C -0.06 -2.01 9.69 22.25 0.22 -1.80 16 21 C -0.12 -1.94 5.58 31.32 0.17 -1.77 16 22 C -0.12 -1.75 6.83 31.67 0.22 -1.54 16 23 C -0.12 -1.91 6.91 31.89 0.22 -1.69 16 24 C -0.11 -1.67 5.09 31.67 0.16 -1.51 16 25 H 0.05 0.76 6.63 -2.39 -0.02 0.75 16 26 H 0.06 0.83 7.42 -2.39 -0.02 0.81 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.96 8.10 -2.39 -0.02 0.94 16 29 H 0.06 0.94 6.61 -2.39 -0.02 0.93 16 30 H 0.34 7.45 6.95 -89.69 -0.62 6.82 16 31 H 0.08 1.78 6.36 -2.39 -0.02 1.76 16 32 H 0.05 0.97 6.45 -2.39 -0.02 0.95 16 33 H 0.13 4.04 8.06 -2.91 -0.02 4.01 16 34 H 0.12 5.31 5.64 -2.91 -0.02 5.29 16 35 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 36 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 37 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 38 H 0.06 1.22 6.56 -2.39 -0.02 1.21 16 39 H 0.07 1.02 7.67 -2.39 -0.02 1.00 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.08 1.02 7.77 -2.38 -0.02 1.01 16 45 H 0.06 1.06 7.92 -2.39 -0.02 1.04 16 Total: -1.00 -68.77 351.76 3.73 -65.04 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: 0.36 Total: 29.99 kcal Atomic # 6 Polarization: -55.64 SS G_CDS: 4.02 Total: -51.62 kcal Atomic # 7 Polarization: -71.95 SS G_CDS: -2.45 Total: -74.40 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.22 Total: -14.61 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -68.77 3.73 -65.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294451125.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.172 kcal (2) G-P(sol) polarization free energy of solvation -68.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds