Wall clock time and date at job start Tue Mar 31 2020 06:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47062 * 2 1 4 4 C 1.50696 * 109.47383 * 119.99852 * 2 1 3 5 5 C 1.38238 * 119.99728 * 120.00184 * 4 2 1 6 6 C 1.38235 * 120.00108 * 180.02562 * 5 4 2 7 7 C 1.38243 * 119.99617 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99586 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47116 * 89.99867 * 8 7 6 10 10 C 1.50696 * 109.47110 * 179.97438 * 9 8 7 11 11 O 1.21281 * 120.00042 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99865 * 179.97438 * 10 9 8 13 13 C 1.46493 * 119.99962 * 0.02562 * 12 10 9 14 14 C 1.46496 * 119.99741 * 179.97438 * 12 10 9 15 15 C 1.50709 * 109.47001 * 90.00387 * 14 12 10 16 16 H 1.08001 * 119.99331 * 359.97438 * 15 14 12 17 17 C 1.37869 * 120.00246 * 180.02562 * 15 14 12 18 18 N 1.31520 * 120.00062 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00393 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47275 * 89.99325 * 19 17 15 21 21 H 1.48501 * 109.47447 * 209.99854 * 19 17 15 22 22 H 1.48500 * 109.46856 * 330.00053 * 19 17 15 23 23 C 1.38233 * 120.00248 * 0.25361 * 7 6 5 24 24 C 1.38234 * 120.00209 * 300.02591 * 4 2 1 25 25 H 1.09001 * 109.47412 * 59.99879 * 1 2 3 26 26 H 1.09003 * 109.46938 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46954 * 299.99809 * 1 2 3 28 28 H 1.09001 * 109.46954 * 240.00191 * 2 1 3 29 29 H 1.09001 * 109.47293 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47105 * 300.00308 * 3 2 1 31 31 H 1.09001 * 109.47080 * 60.00267 * 3 2 1 32 32 H 1.08000 * 120.00578 * 359.97438 * 5 4 2 33 33 H 1.07999 * 120.00165 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.46646 * 209.99280 * 8 7 6 35 35 H 1.09000 * 109.47248 * 329.99998 * 8 7 6 36 36 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 37 37 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 38 38 H 1.09003 * 109.47205 * 89.99932 * 13 12 10 39 39 H 1.09000 * 109.47085 * 209.99906 * 13 12 10 40 40 H 1.08999 * 109.47554 * 329.99880 * 13 12 10 41 41 H 1.09000 * 109.47287 * 209.99941 * 14 12 10 42 42 H 1.09002 * 109.47320 * 330.00543 * 14 12 10 43 43 H 0.96994 * 120.00434 * 180.02562 * 18 17 15 44 44 H 1.08004 * 119.99934 * 179.72684 * 23 7 6 45 45 H 1.07999 * 120.00005 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 2.8272 -1.8342 1.1035 6 6 3.2876 -2.4862 2.2321 7 6 2.9528 -2.0145 3.4877 8 6 3.4543 -2.7257 4.7182 9 6 4.8018 -2.1336 5.1358 10 6 5.3030 -2.8442 6.3665 11 8 4.6472 -3.7368 6.8607 12 7 6.4806 -2.4886 6.9175 13 6 7.2729 -1.4109 6.3202 14 6 6.9675 -3.1791 8.1142 15 6 7.8043 -4.3639 7.7051 16 1 7.9576 -4.5809 6.6583 17 6 8.3732 -5.1712 8.6670 18 7 8.1861 -4.9072 9.9418 19 14 9.4097 -6.6401 8.1600 20 1 10.8285 -6.2223 8.0262 21 1 9.3017 -7.7023 9.1922 22 1 8.9231 -7.1636 6.8583 23 6 2.1532 -0.8940 3.6146 24 6 1.6980 -0.2384 2.4860 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.0878 -2.2035 0.1226 33 1 3.9082 -3.3645 2.1330 34 1 2.7358 -2.6006 5.5283 35 1 3.5755 -3.7868 4.5005 36 1 5.5203 -2.2585 4.3257 37 1 4.6807 -1.0723 5.3534 38 1 6.9850 -0.4585 6.7654 39 1 8.3316 -1.5930 6.5050 40 1 7.0919 -1.3792 5.2458 41 1 7.5731 -2.4943 8.7078 42 1 6.1191 -3.5209 8.7070 43 1 8.5866 -5.4749 10.6186 44 1 1.8881 -0.5282 4.5956 45 1 1.0771 0.6397 2.5851 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298670577.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:12 Heat of formation + Delta-G solvation = -56.930418 kcal Electronic energy + Delta-G solvation = -22147.865267 eV Core-core repulsion = 18935.385191 eV Total energy + Delta-G solvation = -3212.480076 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.89360 -40.30724 -36.94821 -36.51609 -34.78065 -33.93670 -31.78231 -30.58790 -29.27080 -27.93275 -27.32922 -26.06949 -24.32508 -23.64748 -22.41374 -20.71774 -19.92558 -18.71288 -17.99422 -17.12261 -17.09263 -16.75072 -16.20954 -16.08594 -15.80569 -14.95982 -14.68217 -14.58789 -14.48523 -14.25604 -14.17174 -13.86908 -13.63299 -13.51418 -13.45215 -13.18508 -13.01098 -12.85497 -12.66751 -12.56354 -12.42422 -12.27610 -12.21524 -11.92787 -11.86003 -11.70998 -11.49430 -11.43165 -10.65453 -10.61212 -9.76506 -9.42129 -9.35796 -8.23563 -6.38800 0.45344 0.55800 1.35263 1.38568 1.48946 1.84670 2.32020 2.46676 2.88945 3.05533 3.64003 3.82437 3.88920 4.07589 4.09558 4.20525 4.27799 4.34063 4.37716 4.42845 4.59109 4.62474 4.65347 4.68744 4.72912 4.85253 4.94350 4.95677 5.01547 5.03372 5.03955 5.09272 5.19593 5.22295 5.25654 5.28679 5.39279 5.43295 5.55205 5.60274 5.79515 5.81266 5.83739 6.05017 6.17312 6.68511 6.79233 7.27107 7.48841 8.83539 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.032970 B = 0.002629 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.044461 B =10646.137270 C =10797.291463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.056 4.056 3 C -0.142 4.142 4 C -0.085 4.085 5 C -0.123 4.123 6 C -0.124 4.124 7 C -0.090 4.090 8 C -0.059 4.059 9 C -0.113 4.113 10 C 0.492 3.508 11 O -0.600 6.600 12 N -0.613 5.613 13 C 0.078 3.922 14 C 0.257 3.743 15 C -0.543 4.543 16 H 0.052 0.948 17 C 0.005 3.995 18 N -0.929 5.929 19 Si 0.970 3.030 20 H -0.262 1.262 21 H -0.280 1.280 22 H -0.273 1.273 23 C -0.122 4.122 24 C -0.116 4.116 25 H 0.069 0.931 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.135 0.865 33 H 0.124 0.876 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.093 0.907 41 H 0.023 0.977 42 H -0.003 1.003 43 H 0.267 0.733 44 H 0.128 0.872 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.555 14.418 -22.077 28.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 C -0.200 4.200 4 C -0.085 4.085 5 C -0.141 4.141 6 C -0.142 4.142 7 C -0.090 4.090 8 C -0.097 4.097 9 C -0.152 4.152 10 C 0.281 3.719 11 O -0.482 6.482 12 N -0.344 5.344 13 C -0.064 4.064 14 C 0.136 3.864 15 C -0.581 4.581 16 H 0.071 0.929 17 C -0.194 4.194 18 N -0.569 5.569 19 Si 0.794 3.206 20 H -0.187 1.187 21 H -0.206 1.206 22 H -0.198 1.198 23 C -0.140 4.140 24 C -0.134 4.134 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.153 0.847 33 H 0.142 0.858 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.112 0.888 41 H 0.041 0.959 42 H 0.015 0.985 43 H 0.076 0.924 44 H 0.146 0.854 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.819 13.932 -21.633 28.316 hybrid contribution 0.671 -1.128 0.622 1.452 sum -11.148 12.804 -21.011 27.013 Atomic orbital electron populations 1.21852 0.93860 1.01787 1.02519 1.20161 0.96294 0.96318 0.94644 1.21846 1.00950 0.94662 1.02502 1.20119 0.97399 0.95640 0.95369 1.21261 0.98220 0.95771 0.98811 1.21205 1.00425 1.00423 0.92105 1.19810 0.98563 0.96465 0.94175 1.20205 0.95471 0.98894 0.95114 1.21613 0.98011 1.01336 0.94267 1.21490 0.80664 0.83299 0.86415 1.90628 1.58460 1.33724 1.65380 1.48230 1.20451 1.36403 1.29340 1.21931 0.96191 0.88871 0.99372 1.18760 0.92967 0.91565 0.83149 1.21697 1.31136 1.12285 0.92993 0.92933 1.25900 0.97885 1.00837 0.94753 1.70054 1.45611 1.40489 1.00729 0.85383 0.79064 0.78290 0.77877 1.18678 1.20567 1.19782 1.21215 0.97908 0.95321 0.99511 1.21132 1.00308 1.00288 0.91650 0.91197 0.93231 0.92422 0.90001 0.93030 0.91259 0.92395 0.84672 0.85849 0.91620 0.92157 0.87342 0.86784 0.91112 0.91610 0.88812 0.95886 0.98530 0.92369 0.85422 0.84666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.01 71.98 0.65 -0.92 16 2 C -0.06 -0.68 3.09 -11.54 -0.04 -0.72 16 3 C -0.14 -1.52 9.01 71.98 0.65 -0.87 16 4 C -0.09 -1.44 4.78 -19.87 -0.09 -1.53 16 5 C -0.12 -2.25 9.67 22.27 0.22 -2.04 16 6 C -0.12 -2.66 9.70 22.27 0.22 -2.45 16 7 C -0.09 -2.11 5.13 -19.86 -0.10 -2.21 16 8 C -0.06 -1.68 4.64 29.85 0.14 -1.54 16 9 C -0.11 -3.21 4.23 29.85 0.13 -3.09 16 10 C 0.49 20.94 7.67 87.65 0.67 21.61 16 11 O -0.60 -31.98 15.56 -3.03 -0.05 -32.03 16 12 N -0.61 -26.74 2.86 -851.14 -2.43 -29.17 16 13 C 0.08 2.38 10.24 127.77 1.31 3.69 16 14 C 0.26 14.29 5.16 85.64 0.44 14.74 16 15 C -0.54 -32.02 9.39 25.60 0.24 -31.78 16 16 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 17 C 0.01 0.30 5.46 84.65 0.46 0.76 16 18 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 19 Si 0.97 45.61 29.54 68.60 2.03 47.63 16 20 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 22 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 23 C -0.12 -2.51 9.70 22.27 0.22 -2.29 16 24 C -0.12 -2.04 8.71 22.27 0.19 -1.85 16 25 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.63 7.39 -2.39 -0.02 0.61 16 28 H 0.08 0.91 7.88 -2.39 -0.02 0.89 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.61 7.39 -2.39 -0.02 0.60 16 32 H 0.14 1.94 7.95 -2.91 -0.02 1.91 16 33 H 0.12 2.53 8.06 -2.91 -0.02 2.51 16 34 H 0.07 2.01 8.04 -2.39 -0.02 1.99 16 35 H 0.06 1.92 8.04 -2.39 -0.02 1.90 16 36 H 0.11 2.67 7.40 -2.39 -0.02 2.65 16 37 H 0.11 2.63 8.11 -2.38 -0.02 2.61 16 38 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 40 H 0.09 2.17 6.44 -2.39 -0.02 2.15 16 41 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 42 H 0.00 -0.22 7.42 -2.39 -0.02 -0.24 16 43 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 44 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 45 H 0.14 1.85 7.10 -2.91 -0.02 1.83 16 Total: -1.00 -75.13 370.41 6.07 -69.07 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.94 Total: 11.91 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 5.30 Total: -10.49 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -2.15 Total: -86.09 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.05 Total: -32.03 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -75.13 6.07 -69.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298670577.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.138 kcal (2) G-P(sol) polarization free energy of solvation -75.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds