Wall clock time and date at job start Tue Mar 31 2020 06:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46801 * 2 1 4 4 C 1.53004 * 109.46726 * 175.00166 * 3 2 1 5 5 C 1.53008 * 109.46757 * 185.00439 * 4 3 2 6 6 C 1.50700 * 109.47542 * 295.00102 * 3 2 1 7 7 O 1.21287 * 119.99919 * 298.25017 * 6 3 2 8 8 N 1.34772 * 120.00062 * 118.24712 * 6 3 2 9 9 C 1.46507 * 119.99866 * 4.92004 * 8 6 3 10 10 C 1.50699 * 109.47042 * 273.13101 * 9 8 6 11 11 H 1.08005 * 119.99918 * 359.97438 * 10 9 8 12 12 C 1.37880 * 120.00283 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99446 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00210 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47554 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.46983 * 120.00122 * 14 12 10 17 17 H 1.48508 * 109.46890 * 239.99343 * 14 12 10 18 18 C 1.39928 * 120.00116 * 184.92428 * 8 6 3 19 19 C 1.38870 * 120.06983 * 172.06458 * 18 8 6 20 20 C 1.38111 * 119.92739 * 180.29696 * 19 18 8 21 21 C 1.38286 * 120.06842 * 359.46252 * 20 19 18 22 22 C 1.50703 * 119.92591 * 180.27968 * 21 20 19 23 23 C 1.38279 * 120.14332 * 0.51552 * 21 20 19 24 24 C 1.38121 * 120.06821 * 359.76159 * 23 21 20 25 25 H 1.09003 * 109.47044 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47212 * 299.99692 * 1 2 3 27 27 H 1.08995 * 109.47489 * 59.99950 * 1 2 3 28 28 H 1.09007 * 109.47213 * 240.00450 * 2 1 3 29 29 H 1.08995 * 109.47489 * 120.00050 * 2 1 3 30 30 H 1.08997 * 109.47025 * 55.00243 * 3 2 1 31 31 H 1.08996 * 109.47165 * 304.99831 * 4 3 2 32 32 H 1.08992 * 109.47336 * 65.00730 * 4 3 2 33 33 H 1.08994 * 109.46992 * 180.02562 * 5 4 3 34 34 H 1.09004 * 109.46867 * 299.99914 * 5 4 3 35 35 H 1.08994 * 109.47155 * 59.99557 * 5 4 3 36 36 H 1.09000 * 109.47114 * 33.12946 * 9 8 6 37 37 H 1.08993 * 109.46641 * 153.13160 * 9 8 6 38 38 H 0.96998 * 119.99681 * 180.02562 * 13 12 10 39 39 H 1.07999 * 120.03431 * 0.02562 * 19 18 8 40 40 H 1.07997 * 119.96507 * 179.69989 * 20 19 18 41 41 H 1.08996 * 109.47252 * 270.23325 * 22 21 20 42 42 H 1.08996 * 109.47329 * 30.23572 * 22 21 20 43 43 H 1.09003 * 109.46684 * 150.23648 * 22 21 20 44 44 H 1.08000 * 119.96749 * 179.74190 * 23 21 20 45 45 H 1.07996 * 120.03487 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5648 1.4444 0.1257 5 6 4.0644 2.8851 0.2512 6 6 1.6412 2.1164 -1.2877 7 8 2.0491 1.6895 -2.3471 8 7 0.8313 3.1934 -1.2620 9 6 0.4256 3.7744 0.0203 10 6 -0.8054 3.0668 0.5253 11 1 -1.2421 2.2648 -0.0514 12 6 -1.3748 3.4439 1.7231 13 7 -0.8432 4.4208 2.4250 14 14 -2.9010 2.5673 2.3487 15 1 -3.2988 1.5139 1.3806 16 1 -2.6100 1.9457 3.6655 17 1 -4.0080 3.5461 2.4973 18 6 0.3779 3.7565 -2.4600 19 6 -0.5833 4.7585 -2.4379 20 6 -1.0332 5.3080 -3.6224 21 6 -0.5194 4.8692 -4.8290 22 6 -1.0081 5.4755 -6.1193 23 6 0.4382 3.8720 -4.8544 24 6 0.8881 3.3144 -3.6735 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 1.6053 1.9816 0.8418 31 1 3.8570 0.8801 1.0112 32 1 4.0029 0.9838 -0.7597 33 1 5.1507 2.8865 0.3403 34 1 3.7721 3.4495 -0.6344 35 1 3.6262 3.3458 1.1365 36 1 1.2332 3.6591 0.7432 37 1 0.2065 4.8336 -0.1140 38 1 -1.2435 4.6859 3.2679 39 1 -0.9818 5.1046 -1.4957 40 1 -1.7843 6.0839 -3.6062 41 1 -1.8668 4.9115 -6.4834 42 1 -1.3004 6.5111 -5.9463 43 1 -0.2103 5.4422 -6.8613 44 1 0.8345 3.5285 -5.7985 45 1 1.6357 2.5353 -3.6940 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299264222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:34 Heat of formation + Delta-G solvation = -22.638518 kcal Electronic energy + Delta-G solvation = -24310.852518 eV Core-core repulsion = 21099.859450 eV Total energy + Delta-G solvation = -3210.993067 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.38945 -38.26179 -35.39394 -35.26704 -32.80169 -31.71072 -31.26327 -30.30586 -27.58215 -26.98746 -25.61864 -23.54965 -22.38890 -21.80329 -21.55157 -20.29417 -18.35942 -17.02906 -16.80876 -16.28681 -15.04246 -14.91105 -14.65216 -14.42522 -13.76631 -13.66319 -13.48483 -13.34728 -13.11870 -12.91961 -12.69578 -12.49278 -12.32497 -11.92866 -11.88993 -11.71000 -11.63592 -11.29843 -11.21580 -11.03649 -10.92076 -10.84604 -10.47389 -10.41377 -10.28588 -10.16974 -10.08576 -9.79529 -9.02482 -8.70010 -8.46835 -8.31342 -7.06926 -6.26176 -4.33471 1.87067 2.04226 3.16436 3.25070 3.27200 3.32790 3.72810 4.26268 4.47546 4.98647 5.06947 5.15971 5.33690 5.37602 5.40160 5.56845 5.62294 5.67435 5.77038 5.82605 5.83512 5.85740 6.00599 6.10662 6.13746 6.21852 6.22741 6.28703 6.32973 6.36353 6.41255 6.50321 6.55125 6.61768 6.70120 6.81009 6.96152 6.97758 7.03606 7.11126 7.21757 7.34466 7.68298 7.87447 7.92014 8.16868 8.71683 8.86817 9.33646 10.80110 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011332 B = 0.007276 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.188382 B = 3847.109171 C = 5293.939696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.101 4.101 3 C -0.113 4.113 4 C -0.109 4.109 5 C -0.155 4.155 6 C 0.532 3.468 7 O -0.548 6.548 8 N -0.534 5.534 9 C 0.227 3.773 10 C -0.536 4.536 11 H 0.070 0.930 12 C 0.068 3.932 13 N -0.889 5.889 14 Si 0.891 3.109 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.282 1.282 18 C 0.166 3.834 19 C -0.144 4.144 20 C -0.103 4.103 21 C -0.134 4.134 22 C -0.103 4.103 23 C -0.107 4.107 24 C -0.179 4.179 25 H 0.042 0.958 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.116 0.884 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.047 0.953 37 H 0.045 0.955 38 H 0.266 0.734 39 H 0.137 0.863 40 H 0.116 0.884 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.112 0.888 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.915 -1.816 -6.413 7.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.139 4.139 3 C -0.134 4.134 4 C -0.147 4.147 5 C -0.213 4.213 6 C 0.323 3.677 7 O -0.429 6.429 8 N -0.252 5.252 9 C 0.108 3.892 10 C -0.574 4.574 11 H 0.088 0.912 12 C -0.135 4.135 13 N -0.527 5.527 14 Si 0.718 3.282 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.208 1.208 18 C 0.070 3.930 19 C -0.164 4.164 20 C -0.122 4.122 21 C -0.135 4.135 22 C -0.160 4.160 23 C -0.126 4.126 24 C -0.198 4.198 25 H 0.061 0.939 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.134 0.866 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.155 0.845 40 H 0.134 0.866 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.131 0.869 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 4.127 -1.949 -6.672 8.083 hybrid contribution -1.136 -0.194 0.593 1.296 sum 2.992 -2.143 -6.078 7.106 Atomic orbital electron populations 1.21933 0.95017 1.00484 1.03724 1.21360 0.96746 0.93995 1.01770 1.21567 0.96735 0.97809 0.97302 1.21463 0.93498 0.97507 1.02193 1.21825 1.00459 0.96708 1.02273 1.20677 0.76987 0.79003 0.90994 1.90214 1.55881 1.65120 1.31721 1.46067 1.44025 1.27656 1.07472 1.19721 0.96588 0.95178 0.77714 1.21533 1.11085 1.19207 1.05572 0.91191 1.24889 0.97287 0.94917 0.96415 1.69926 1.40383 1.27843 1.14558 0.86535 0.82868 0.79842 0.78935 1.19417 1.20728 1.20834 1.18110 0.94723 0.94192 0.85979 1.21102 0.97972 0.98038 0.99307 1.20718 0.99818 1.00135 0.91541 1.19766 0.99595 0.99266 0.94846 1.20654 1.00636 0.99999 0.94727 1.20893 0.97457 0.96554 0.97692 1.22746 1.03460 1.03256 0.90340 0.93857 0.90565 0.92861 0.92002 0.91541 0.86573 0.91283 0.91480 0.92880 0.93033 0.92028 0.93526 0.93696 0.92470 0.84478 0.86643 0.92121 0.92269 0.92342 0.86946 0.80535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.66 37.16 0.32 -2.44 16 2 C -0.10 -1.65 5.37 -26.73 -0.14 -1.79 16 3 C -0.11 -2.01 1.78 -91.77 -0.16 -2.18 16 4 C -0.11 -1.65 5.35 -26.72 -0.14 -1.79 16 5 C -0.16 -2.34 9.73 37.16 0.36 -1.98 16 6 C 0.53 10.78 4.33 -10.99 -0.05 10.73 16 7 O -0.55 -11.70 13.01 5.55 0.07 -11.63 16 8 N -0.53 -11.38 2.69 -114.74 -0.31 -11.68 16 9 C 0.23 5.17 4.13 -5.19 -0.02 5.15 16 10 C -0.54 -13.00 7.69 -34.44 -0.26 -13.26 16 11 H 0.07 1.75 6.07 -52.48 -0.32 1.43 16 12 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 13 N -0.89 -23.29 13.29 55.43 0.74 -22.55 16 14 Si 0.89 19.83 29.54 -169.99 -5.02 14.80 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 C 0.17 3.49 6.49 -83.69 -0.54 2.94 16 19 C -0.14 -2.87 9.15 -39.39 -0.36 -3.23 16 20 C -0.10 -1.78 9.69 -39.61 -0.38 -2.17 16 21 C -0.13 -2.16 5.88 -104.59 -0.62 -2.77 16 22 C -0.10 -1.27 10.01 36.01 0.36 -0.91 16 23 C -0.11 -1.84 9.69 -39.61 -0.38 -2.22 16 24 C -0.18 -3.54 9.04 -39.39 -0.36 -3.89 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 1.47 6.96 -51.93 -0.36 1.11 16 27 H 0.05 1.07 6.74 -51.93 -0.35 0.72 16 28 H 0.06 1.01 8.00 -51.93 -0.42 0.59 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.12 2.28 5.28 -51.93 -0.27 2.00 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 1.02 7.94 -51.93 -0.41 0.61 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.86 7.38 -51.93 -0.38 0.48 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.05 1.08 6.34 -51.93 -0.33 0.75 16 37 H 0.05 1.09 6.39 -51.93 -0.33 0.76 16 38 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 39 H 0.14 2.88 6.31 -52.49 -0.33 2.55 16 40 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 43 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 44 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 45 H 0.18 3.68 4.56 -56.09 -0.26 3.42 16 LS Contribution 353.70 15.07 5.33 5.33 Total: -1.00 -26.49 353.70 -8.79 -35.28 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -7.12 Total: 8.65 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -2.48 Total: -18.20 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.43 Total: -34.23 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.07 Total: -11.63 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -26.49 -8.79 -35.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299264222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.640 kcal (2) G-P(sol) polarization free energy of solvation -26.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds