Wall clock time and date at job start Tue Mar 31 2020 05:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 112.84971 * 2 1 4 4 C 1.53786 * 113.61489 * 228.69747 * 2 1 3 5 5 C 1.54052 * 87.07515 * 220.02173 * 4 2 1 6 6 C 1.53773 * 113.61465 * 131.19852 * 2 1 3 7 7 H 1.09005 * 113.61333 * 254.61310 * 6 2 1 8 8 N 1.46502 * 113.61651 * 25.43142 * 6 2 1 9 9 C 1.39671 * 120.00094 * 203.46952 * 8 6 2 10 10 C 1.38968 * 120.04361 * 0.02562 * 9 8 6 11 11 C 1.38114 * 120.03275 * 179.97438 * 10 9 8 12 12 C 1.38215 * 120.13003 * 0.02562 * 11 10 9 13 13 C 1.38775 * 120.09079 * 359.97438 * 12 11 10 14 14 O 1.35897 * 120.01862 * 179.97438 * 13 12 11 15 15 C 1.42901 * 117.00046 * 0.02562 * 14 13 12 16 16 C 1.52999 * 109.47123 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47245 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99640 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00115 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00051 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99799 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47485 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47213 * 119.99857 * 21 19 17 24 24 H 1.48505 * 109.47029 * 239.99712 * 21 19 17 25 25 C 1.38617 * 119.96693 * 359.97438 * 13 12 11 26 26 H 1.08996 * 109.47110 * 288.80554 * 1 2 3 27 27 H 1.09004 * 109.47234 * 48.80569 * 1 2 3 28 28 H 1.08994 * 109.47381 * 168.80083 * 1 2 3 29 29 H 1.08994 * 109.47139 * 191.19846 * 3 2 1 30 30 H 1.09000 * 109.47469 * 311.19802 * 3 2 1 31 31 H 1.08998 * 109.47020 * 71.19506 * 3 2 1 32 32 H 1.09000 * 113.61313 * 334.56747 * 4 2 1 33 33 H 1.08998 * 113.61484 * 105.38605 * 4 2 1 34 34 H 1.08998 * 113.61007 * 270.92314 * 5 4 2 35 35 H 1.09000 * 113.69502 * 139.94902 * 5 4 2 36 36 H 0.96999 * 119.99387 * 23.46961 * 8 6 2 37 37 H 1.07998 * 119.99055 * 0.02562 * 10 9 8 38 38 H 1.08000 * 119.93861 * 180.02562 * 11 10 9 39 39 H 1.07996 * 119.95886 * 179.71920 * 12 11 10 40 40 H 1.09000 * 109.47187 * 299.99928 * 15 14 13 41 41 H 1.09001 * 109.46792 * 60.00055 * 15 14 13 42 42 H 1.09003 * 109.47323 * 299.99840 * 16 15 14 43 43 H 1.09001 * 109.47453 * 60.00201 * 16 15 14 44 44 H 0.97000 * 120.00336 * 180.02562 * 20 19 17 45 45 H 1.07995 * 120.06907 * 180.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1460 -0.9300 -1.0586 5 6 3.1941 -1.3142 0.0031 6 6 2.1460 -0.9280 1.0601 7 1 2.5637 -0.3971 1.9156 8 7 1.2703 -2.0358 1.4505 9 6 1.4384 -2.6551 2.6911 10 6 2.4356 -2.2209 3.5561 11 6 2.6013 -2.8331 4.7830 12 6 1.7769 -3.8788 5.1535 13 6 0.7794 -4.3167 4.2938 14 8 -0.0300 -5.3453 4.6594 15 6 0.2021 -5.9288 5.9430 16 6 -0.7983 -7.0628 6.1761 17 6 -0.5540 -7.6777 7.5301 18 1 0.2361 -7.2980 8.1610 19 6 -1.3384 -8.7257 7.9629 20 7 -2.3001 -9.1884 7.1945 21 14 -1.0350 -9.4884 9.6410 22 1 0.0967 -8.7922 10.3040 23 1 -2.2566 -9.3531 10.4744 24 1 -0.7036 -10.9269 9.4783 25 6 0.6090 -3.7044 3.0619 26 1 -0.3633 0.3313 0.9728 27 1 -0.3634 0.6769 -0.7733 28 1 -0.3634 -1.0080 -0.1996 29 1 3.1941 1.3533 -0.1996 30 1 1.6415 2.0077 -0.7732 31 1 1.9599 1.8734 0.9728 32 1 1.4945 -1.7548 -1.3474 33 1 2.5637 -0.4007 -1.9149 34 1 4.0725 -0.6689 0.0030 35 1 3.4467 -2.3746 0.0057 36 1 0.5739 -2.3391 0.8473 37 1 3.0809 -1.4038 3.2692 38 1 3.3765 -2.4941 5.4542 39 1 1.9118 -4.3585 6.1116 40 1 1.2165 -6.3256 5.9837 41 1 0.0776 -5.1695 6.7151 42 1 -1.8129 -6.6664 6.1353 43 1 -0.6734 -7.8220 5.4040 44 1 -2.8522 -9.9255 7.4991 45 1 -0.1670 -4.0435 2.3918 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000311886701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:20 Heat of formation + Delta-G solvation = -7.485061 kcal Electronic energy + Delta-G solvation = -22173.884414 eV Core-core repulsion = 18963.548450 eV Total energy + Delta-G solvation = -3210.335964 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.59037 -39.43261 -37.25815 -33.95932 -33.28794 -31.03225 -30.70718 -29.35824 -28.52739 -27.55085 -25.44113 -24.71412 -22.80416 -22.50266 -21.58813 -20.33081 -18.46853 -18.03201 -16.46449 -16.19955 -15.74014 -15.55036 -15.23252 -15.04108 -14.87588 -14.52602 -14.20125 -13.86267 -13.66848 -13.31412 -12.98373 -12.66221 -12.61104 -12.45855 -12.30241 -12.03653 -11.85140 -11.53844 -11.36743 -11.27275 -10.98637 -10.91342 -10.71422 -10.55235 -10.43603 -10.27259 -9.90646 -9.65524 -9.61409 -9.25099 -8.43111 -7.92181 -7.29099 -6.08014 -4.12246 1.74607 1.89662 3.19030 3.28248 3.35387 3.39357 4.02417 4.03971 4.11100 4.28203 4.44646 4.47543 4.59104 4.84257 5.11318 5.11923 5.19299 5.28495 5.30455 5.31702 5.44186 5.45158 5.50142 5.57640 5.60752 5.62285 5.69932 5.73678 5.79075 5.86261 6.00505 6.03210 6.11062 6.13139 6.17737 6.45659 6.65698 6.70336 6.80294 6.92551 7.43199 7.55241 7.68068 7.70555 7.86510 8.14751 8.27716 8.93710 9.51927 11.03694 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.040391 B = 0.002430 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.054487 B =11521.312723 C =11868.124182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.097 4.097 3 C -0.126 4.126 4 C -0.132 4.132 5 C -0.161 4.161 6 C 0.141 3.859 7 H 0.091 0.909 8 N -0.728 5.728 9 C 0.249 3.751 10 C -0.244 4.244 11 C -0.037 4.037 12 C -0.264 4.264 13 C 0.188 3.812 14 O -0.317 6.317 15 C 0.067 3.933 16 C 0.024 3.976 17 C -0.524 4.524 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.890 5.890 21 Si 0.898 3.102 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.238 4.238 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.398 0.602 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.126 0.874 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.262 0.738 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.199 20.472 -15.357 27.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.098 4.098 3 C -0.183 4.183 4 C -0.169 4.169 5 C -0.200 4.200 6 C 0.034 3.966 7 H 0.109 0.891 8 N -0.357 5.357 9 C 0.147 3.853 10 C -0.266 4.266 11 C -0.056 4.056 12 C -0.285 4.285 13 C 0.140 3.860 14 O -0.229 6.229 15 C -0.008 4.008 16 C -0.013 4.013 17 C -0.562 4.562 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.262 4.262 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.234 0.766 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.144 0.856 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.072 0.928 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.012 20.362 -15.463 27.458 hybrid contribution -0.028 -0.637 0.816 1.035 sum 9.984 19.725 -14.647 26.520 Atomic orbital electron populations 1.21660 0.93885 1.01632 1.02046 1.22234 0.95846 0.95149 0.96563 1.21555 1.00609 0.93958 1.02212 1.23088 0.98283 0.98893 0.96683 1.23498 0.97346 1.02241 0.96910 1.21848 0.91038 0.87723 0.95966 0.89082 1.44252 1.38012 1.36689 1.16755 1.17340 0.92638 0.90330 0.85041 1.20423 1.03496 1.06179 0.96490 1.20620 0.96580 0.93527 0.94875 1.21145 1.01260 1.03862 1.02212 1.18813 0.88425 0.86589 0.92200 1.86145 1.53947 1.44447 1.38393 1.23309 1.01243 0.96308 0.79891 1.19135 0.93819 0.91062 0.97267 1.21020 1.17206 1.16774 1.01246 0.92294 1.24995 0.94958 0.96653 0.97668 1.69985 1.19689 1.26366 1.36793 0.86435 0.78193 0.79077 0.83700 1.19628 1.20856 1.20864 1.19651 1.06293 1.02206 0.98003 0.92158 0.92545 0.92636 0.92200 0.92092 0.92101 0.90242 0.91429 0.89618 0.90879 0.76561 0.86600 0.86395 0.85608 0.93106 0.93092 0.95437 0.95438 0.92794 0.85853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.97 8.58 37.16 0.32 -0.65 16 2 C -0.10 -0.67 1.35 -153.70 -0.21 -0.88 16 3 C -0.13 -0.72 9.07 37.16 0.34 -0.39 16 4 C -0.13 -0.91 7.09 -25.77 -0.18 -1.09 16 5 C -0.16 -1.22 7.55 -25.77 -0.19 -1.42 16 6 C 0.14 1.20 3.54 -67.12 -0.24 0.96 16 7 H 0.09 0.79 6.16 -51.93 -0.32 0.47 16 8 N -0.73 -7.59 4.97 -51.40 -0.26 -7.85 16 9 C 0.25 3.36 6.65 -83.81 -0.56 2.81 16 10 C -0.24 -3.19 9.26 -39.36 -0.36 -3.55 16 11 C -0.04 -0.52 10.03 -39.64 -0.40 -0.91 16 12 C -0.26 -4.38 9.04 -39.39 -0.36 -4.74 16 13 C 0.19 3.45 6.68 -39.24 -0.26 3.19 16 14 O -0.32 -6.79 10.13 -19.42 -0.20 -6.98 16 15 C 0.07 1.47 4.68 37.16 0.17 1.65 16 16 C 0.02 0.65 5.34 -27.88 -0.15 0.50 16 17 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 18 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 21 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C -0.24 -3.81 9.83 -39.24 -0.39 -4.20 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.40 6.60 -51.93 -0.34 0.06 16 29 H 0.06 0.31 7.35 -51.93 -0.38 -0.07 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.57 7.96 -51.93 -0.41 0.15 16 33 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 34 H 0.09 0.55 7.66 -51.93 -0.40 0.15 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.40 3.82 7.13 -40.82 -0.29 3.53 16 37 H 0.12 1.27 6.08 -52.49 -0.32 0.95 16 38 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.13 2.07 6.29 -52.49 -0.33 1.74 16 40 H 0.05 1.07 7.65 -51.93 -0.40 0.68 16 41 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.12 1.88 8.06 -52.49 -0.42 1.45 16 LS Contribution 360.33 15.07 5.43 5.43 Total: -1.00 -30.47 360.33 -9.54 -40.01 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -7.36 Total: 1.22 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -2.88 Total: -22.26 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.48 Total: -33.87 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.20 Total: -6.98 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.47 -9.54 -40.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311886701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.522 kcal (2) G-P(sol) polarization free energy of solvation -30.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds