Wall clock time and date at job start Tue Mar 31 2020 05:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 112.84971 * 2 1 4 4 C 1.53786 * 113.61489 * 228.69747 * 2 1 3 5 5 C 1.54052 * 87.07515 * 220.02173 * 4 2 1 6 6 C 1.53773 * 113.61465 * 131.19852 * 2 1 3 7 7 H 1.09005 * 113.61333 * 254.61310 * 6 2 1 8 8 N 1.46502 * 113.61651 * 25.43142 * 6 2 1 9 9 C 1.39671 * 120.00094 * 203.46952 * 8 6 2 10 10 C 1.38968 * 120.04361 * 0.02562 * 9 8 6 11 11 C 1.38114 * 120.03275 * 179.97438 * 10 9 8 12 12 C 1.38215 * 120.13003 * 0.02562 * 11 10 9 13 13 C 1.38775 * 120.09079 * 359.97438 * 12 11 10 14 14 O 1.35897 * 120.01862 * 179.97438 * 13 12 11 15 15 C 1.42901 * 117.00046 * 0.02562 * 14 13 12 16 16 C 1.52999 * 109.47123 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47245 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99640 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00115 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00051 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99799 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47485 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47213 * 119.99857 * 21 19 17 24 24 H 1.48505 * 109.47029 * 239.99712 * 21 19 17 25 25 C 1.38617 * 119.96693 * 359.97438 * 13 12 11 26 26 H 1.08996 * 109.47110 * 288.80554 * 1 2 3 27 27 H 1.09004 * 109.47234 * 48.80569 * 1 2 3 28 28 H 1.08994 * 109.47381 * 168.80083 * 1 2 3 29 29 H 1.08994 * 109.47139 * 191.19846 * 3 2 1 30 30 H 1.09000 * 109.47469 * 311.19802 * 3 2 1 31 31 H 1.08998 * 109.47020 * 71.19506 * 3 2 1 32 32 H 1.09000 * 113.61313 * 334.56747 * 4 2 1 33 33 H 1.08998 * 113.61484 * 105.38605 * 4 2 1 34 34 H 1.08998 * 113.61007 * 270.92314 * 5 4 2 35 35 H 1.09000 * 113.69502 * 139.94902 * 5 4 2 36 36 H 0.96999 * 119.99387 * 23.46961 * 8 6 2 37 37 H 1.07998 * 119.99055 * 0.02562 * 10 9 8 38 38 H 1.08000 * 119.93861 * 180.02562 * 11 10 9 39 39 H 1.07996 * 119.95886 * 179.71920 * 12 11 10 40 40 H 1.09000 * 109.47187 * 299.99928 * 15 14 13 41 41 H 1.09001 * 109.46792 * 60.00055 * 15 14 13 42 42 H 1.09003 * 109.47323 * 299.99840 * 16 15 14 43 43 H 1.09001 * 109.47453 * 60.00201 * 16 15 14 44 44 H 0.97000 * 120.00336 * 180.02562 * 20 19 17 45 45 H 1.07995 * 120.06907 * 180.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1460 -0.9300 -1.0586 5 6 3.1941 -1.3142 0.0031 6 6 2.1460 -0.9280 1.0601 7 1 2.5637 -0.3971 1.9156 8 7 1.2703 -2.0358 1.4505 9 6 1.4384 -2.6551 2.6911 10 6 2.4356 -2.2209 3.5561 11 6 2.6013 -2.8331 4.7830 12 6 1.7769 -3.8788 5.1535 13 6 0.7794 -4.3167 4.2938 14 8 -0.0300 -5.3453 4.6594 15 6 0.2021 -5.9288 5.9430 16 6 -0.7983 -7.0628 6.1761 17 6 -0.5540 -7.6777 7.5301 18 1 0.2361 -7.2980 8.1610 19 6 -1.3384 -8.7257 7.9629 20 7 -2.3001 -9.1884 7.1945 21 14 -1.0350 -9.4884 9.6410 22 1 0.0967 -8.7922 10.3040 23 1 -2.2566 -9.3531 10.4744 24 1 -0.7036 -10.9269 9.4783 25 6 0.6090 -3.7044 3.0619 26 1 -0.3633 0.3313 0.9728 27 1 -0.3634 0.6769 -0.7733 28 1 -0.3634 -1.0080 -0.1996 29 1 3.1941 1.3533 -0.1996 30 1 1.6415 2.0077 -0.7732 31 1 1.9599 1.8734 0.9728 32 1 1.4945 -1.7548 -1.3474 33 1 2.5637 -0.4007 -1.9149 34 1 4.0725 -0.6689 0.0030 35 1 3.4467 -2.3746 0.0057 36 1 0.5739 -2.3391 0.8473 37 1 3.0809 -1.4038 3.2692 38 1 3.3765 -2.4941 5.4542 39 1 1.9118 -4.3585 6.1116 40 1 1.2165 -6.3256 5.9837 41 1 0.0776 -5.1695 6.7151 42 1 -1.8129 -6.6664 6.1353 43 1 -0.6734 -7.8220 5.4040 44 1 -2.8522 -9.9255 7.4991 45 1 -0.1670 -4.0435 2.3918 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000311886701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:19 Heat of formation + Delta-G solvation = -23.451433 kcal Electronic energy + Delta-G solvation = -22174.576768 eV Core-core repulsion = 18963.548450 eV Total energy + Delta-G solvation = -3211.028318 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.39672 -40.65081 -38.55673 -35.53370 -34.83724 -32.57334 -31.57690 -30.77656 -29.56288 -28.13624 -27.06267 -25.83786 -23.90551 -23.45186 -23.02348 -21.78507 -19.45307 -19.12078 -18.35448 -17.21743 -16.94031 -16.90537 -16.60099 -16.52968 -16.04157 -15.51167 -15.06638 -14.78610 -14.46110 -14.42669 -14.32599 -14.15298 -13.99707 -13.43373 -13.18772 -13.09380 -12.99443 -12.79751 -12.52142 -12.49342 -12.36880 -12.29900 -11.99430 -11.64926 -11.62118 -11.52700 -11.36764 -11.20009 -10.90683 -10.66297 -10.62756 -9.22744 -8.33336 -8.26778 -6.40408 0.57095 0.68930 1.40974 1.42179 1.55827 2.14409 2.39104 2.72360 2.94962 3.07578 3.44379 3.68146 3.88128 3.97260 4.00725 4.24900 4.27632 4.28910 4.30286 4.36133 4.48738 4.58105 4.63261 4.71503 4.74864 4.77356 4.82653 4.91401 5.00315 5.00811 5.08559 5.14599 5.20066 5.23171 5.31484 5.34710 5.46619 5.46935 5.49098 5.53651 5.66928 5.67149 5.79301 6.07349 6.44999 6.61918 6.74564 6.79466 7.29672 8.86742 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.040391 B = 0.002430 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.054487 B =11521.312723 C =11868.124182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 C -0.125 4.125 4 C -0.130 4.130 5 C -0.156 4.156 6 C 0.129 3.871 7 H 0.095 0.905 8 N -0.720 5.720 9 C 0.256 3.744 10 C -0.236 4.236 11 C -0.031 4.031 12 C -0.282 4.282 13 C 0.152 3.848 14 O -0.343 6.343 15 C 0.087 3.913 16 C 0.028 3.972 17 C -0.544 4.544 18 H 0.071 0.929 19 C 0.000 4.000 20 N -0.932 5.932 21 Si 0.978 3.022 22 H -0.257 1.257 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.254 4.254 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.057 0.943 36 H 0.402 0.598 37 H 0.146 0.854 38 H 0.150 0.850 39 H 0.122 0.878 40 H 0.059 0.941 41 H 0.059 0.941 42 H -0.002 1.002 43 H -0.002 1.002 44 H 0.267 0.733 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.340 22.529 -15.272 29.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.090 4.090 3 C -0.182 4.182 4 C -0.167 4.167 5 C -0.195 4.195 6 C 0.023 3.977 7 H 0.113 0.887 8 N -0.348 5.348 9 C 0.151 3.849 10 C -0.259 4.259 11 C -0.050 4.050 12 C -0.302 4.302 13 C 0.106 3.894 14 O -0.257 6.257 15 C 0.012 3.988 16 C -0.009 4.009 17 C -0.582 4.582 18 H 0.089 0.911 19 C -0.198 4.198 20 N -0.571 5.571 21 Si 0.801 3.199 22 H -0.181 1.181 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.277 4.277 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.076 0.924 36 H 0.238 0.762 37 H 0.163 0.837 38 H 0.168 0.832 39 H 0.140 0.860 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.076 0.924 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.168 22.461 -15.421 29.839 hybrid contribution -0.673 -1.138 0.608 1.456 sum 11.495 21.323 -14.813 28.394 Atomic orbital electron populations 1.21670 0.94279 1.01608 1.01798 1.22221 0.95520 0.95694 0.95594 1.21570 1.01189 0.92925 1.02536 1.23079 0.97911 0.98755 0.96982 1.23488 0.97805 1.01670 0.96524 1.22102 0.91410 0.87426 0.96721 0.88701 1.44369 1.38142 1.36640 1.15613 1.17413 0.91927 0.89398 0.86131 1.20790 1.03032 1.06227 0.95804 1.20969 0.96306 0.92159 0.95573 1.21223 1.01788 1.05222 1.01995 1.19140 0.89555 0.86900 0.93794 1.86054 1.55635 1.46224 1.37785 1.22841 0.99854 0.95089 0.80988 1.18980 0.93641 0.91913 0.96415 1.21425 1.17671 1.17249 1.01853 0.91112 1.26065 0.94424 0.97105 1.02246 1.70128 1.20772 1.27046 1.39163 0.85213 0.78584 0.78081 0.78031 1.18100 1.20175 1.20196 1.19756 1.07207 1.03287 0.97488 0.93156 0.91584 0.93060 0.91247 0.91383 0.92098 0.90855 0.90263 0.87874 0.92378 0.76187 0.83687 0.83220 0.86021 0.92268 0.92241 0.98382 0.98391 0.92436 0.86186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.58 71.98 0.62 -1.13 16 2 C -0.09 -1.03 1.35 -51.66 -0.07 -1.10 16 3 C -0.12 -1.07 9.07 71.98 0.65 -0.41 16 4 C -0.13 -1.48 7.09 31.21 0.22 -1.26 16 5 C -0.16 -1.98 7.55 31.21 0.24 -1.74 16 6 C 0.13 1.88 3.54 45.52 0.16 2.04 16 7 H 0.10 1.34 6.16 -2.38 -0.01 1.32 16 8 N -0.72 -14.02 4.97 -316.52 -1.57 -15.60 16 9 C 0.26 6.63 6.65 38.20 0.25 6.89 16 10 C -0.24 -5.58 9.26 22.42 0.21 -5.38 16 11 C -0.03 -0.81 10.03 22.23 0.22 -0.58 16 12 C -0.28 -9.28 9.04 22.39 0.20 -9.08 16 13 C 0.15 5.77 6.68 22.49 0.15 5.92 16 14 O -0.34 -15.50 10.13 -92.39 -0.94 -16.43 16 15 C 0.09 3.99 4.68 71.98 0.34 4.33 16 16 C 0.03 1.56 5.34 29.85 0.16 1.72 16 17 C -0.54 -31.41 9.11 25.60 0.23 -31.17 16 18 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 19 C 0.00 0.00 5.46 84.65 0.46 0.46 16 20 N -0.93 -57.58 13.29 21.44 0.28 -57.30 16 21 Si 0.98 44.15 29.54 68.60 2.03 46.17 16 22 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 23 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 25 C -0.25 -8.29 9.83 22.49 0.22 -8.07 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.05 0.69 6.60 -2.39 -0.02 0.67 16 29 H 0.07 0.47 7.35 -2.39 -0.02 0.46 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.93 7.96 -2.39 -0.02 0.92 16 33 H 0.08 0.75 8.10 -2.39 -0.02 0.73 16 34 H 0.10 0.97 7.66 -2.39 -0.02 0.95 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 36 H 0.40 7.40 7.13 -92.71 -0.66 6.74 16 37 H 0.15 2.58 6.08 -2.91 -0.02 2.57 16 38 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 39 H 0.12 4.01 6.29 -2.91 -0.02 3.99 16 40 H 0.06 2.58 7.65 -2.39 -0.02 2.56 16 41 H 0.06 2.59 7.66 -2.39 -0.02 2.57 16 42 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 43 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 44 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 45 H 0.12 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -67.68 360.33 4.38 -63.30 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.31 Total: 18.42 kcal Atomic # 6 Polarization: -42.84 SS G_CDS: 4.27 Total: -38.57 kcal Atomic # 7 Polarization: -71.61 SS G_CDS: -1.29 Total: -72.90 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.94 Total: -16.43 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -67.68 4.38 -63.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311886701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.851 kcal (2) G-P(sol) polarization free energy of solvation -67.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds