Wall clock time and date at job start Tue Mar 31 2020 05:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 112.85313 * 2 1 4 4 C 1.53787 * 113.61226 * 228.69792 * 2 1 3 5 5 C 1.53782 * 87.08078 * 220.02003 * 4 2 1 6 6 C 1.53776 * 87.08270 * 25.43231 * 5 4 2 7 7 H 1.09000 * 113.69294 * 89.13057 * 6 5 4 8 8 N 1.46497 * 113.61393 * 220.02315 * 6 5 4 9 9 C 1.39673 * 119.99671 * 252.49787 * 8 6 5 10 10 C 1.38971 * 120.04941 * 359.97416 * 9 8 6 11 11 C 1.38105 * 120.03817 * 180.02562 * 10 9 8 12 12 C 1.38223 * 120.12852 * 0.02562 * 11 10 9 13 13 C 1.38773 * 120.09207 * 0.02562 * 12 11 10 14 14 O 1.35890 * 120.01538 * 180.02562 * 13 12 11 15 15 C 1.42894 * 117.00457 * 359.95025 * 14 13 12 16 16 C 1.53001 * 109.47496 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.47391 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99562 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99703 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00379 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99339 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47536 * 60.00433 * 21 19 17 23 23 H 1.48505 * 109.47111 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47577 * 300.00183 * 21 19 17 25 25 C 1.38611 * 119.96162 * 359.97264 * 13 12 11 26 26 H 1.09006 * 109.46725 * 288.79956 * 1 2 3 27 27 H 1.08993 * 109.47113 * 48.79521 * 1 2 3 28 28 H 1.09000 * 109.47404 * 168.80325 * 1 2 3 29 29 H 1.09003 * 109.47135 * 191.19886 * 3 2 1 30 30 H 1.08997 * 109.47292 * 311.20255 * 3 2 1 31 31 H 1.09005 * 109.46944 * 71.20155 * 3 2 1 32 32 H 1.08999 * 113.61036 * 334.56802 * 4 2 1 33 33 H 1.08995 * 113.61840 * 105.38376 * 4 2 1 34 34 H 1.08996 * 113.61180 * 270.88141 * 5 4 2 35 35 H 1.09003 * 113.61137 * 139.98110 * 5 4 2 36 36 H 0.96996 * 120.00820 * 72.49190 * 8 6 5 37 37 H 1.08004 * 119.97746 * 0.02731 * 10 9 8 38 38 H 1.08004 * 119.93958 * 179.97438 * 11 10 9 39 39 H 1.07997 * 119.95126 * 179.97438 * 12 11 10 40 40 H 1.09005 * 109.46897 * 300.00409 * 15 14 13 41 41 H 1.09001 * 109.47284 * 60.00245 * 15 14 13 42 42 H 1.08997 * 109.47079 * 300.00115 * 16 15 14 43 43 H 1.09001 * 109.47111 * 59.99579 * 16 15 14 44 44 H 0.96994 * 119.99951 * 180.02562 * 20 19 17 45 45 H 1.08005 * 120.06230 * 180.29536 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4098 0.0000 4 6 2.1460 -0.9301 -1.0586 5 6 3.1923 -1.3137 0.0011 6 6 2.1461 -0.9282 1.0601 7 1 1.4940 -1.7516 1.3516 8 7 2.7093 -0.2145 2.2088 9 6 2.8214 -0.8573 3.4438 10 6 2.3985 -2.1737 3.5840 11 6 2.5090 -2.8089 4.8054 12 6 3.0396 -2.1377 5.8910 13 6 3.4625 -0.8227 5.7572 14 8 3.9843 -0.1645 6.8254 15 6 4.0668 -0.8868 8.0556 16 6 4.6749 0.0114 9.1347 17 6 4.7613 -0.7502 10.4323 18 1 4.4172 -1.7727 10.4821 19 6 5.2805 -0.1419 11.5554 20 7 5.6998 1.1031 11.4945 21 14 5.3881 -1.0862 13.1635 22 1 6.2439 -2.2854 12.9771 23 1 5.9794 -0.2148 14.2106 24 1 4.0273 -1.5093 13.5813 25 6 3.3534 -0.1816 4.5332 26 1 -0.3633 0.3312 0.9729 27 1 -0.3633 0.6769 -0.7731 28 1 -0.3634 -1.0081 -0.1995 29 1 3.1943 1.3531 -0.1996 30 1 1.6415 2.0076 -0.7732 31 1 1.9601 1.8733 0.9729 32 1 1.4944 -1.7547 -1.3474 33 1 2.5636 -0.4008 -1.9150 34 1 4.0710 -0.6688 0.0005 35 1 3.4442 -2.3742 0.0020 36 1 3.0044 0.7044 2.1119 37 1 1.9833 -2.7002 2.7374 38 1 2.1795 -3.8318 4.9127 39 1 3.1243 -2.6370 6.8448 40 1 3.0679 -1.1973 8.3623 41 1 4.6949 -1.7671 7.9188 42 1 5.6737 0.3222 8.8283 43 1 4.0465 0.8914 9.2715 44 1 6.0654 1.5309 12.2845 45 1 3.6865 0.8402 4.4260 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000311886704.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:22 Heat of formation + Delta-G solvation = -9.213453 kcal Electronic energy + Delta-G solvation = -22154.044666 eV Core-core repulsion = 18943.633753 eV Total energy + Delta-G solvation = -3210.410913 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.53145 -39.43120 -37.27224 -33.99963 -33.28510 -31.06290 -30.72699 -29.38044 -28.52018 -27.75407 -25.29735 -24.50958 -22.79802 -22.53023 -21.53248 -20.27844 -18.68499 -17.96253 -16.56393 -16.36808 -15.63894 -15.56358 -15.23325 -15.13030 -14.82966 -14.44953 -14.28987 -13.57565 -13.46579 -13.28836 -13.02268 -12.62919 -12.58475 -12.47508 -12.28617 -12.18230 -11.85382 -11.53246 -11.42181 -11.24205 -10.97591 -10.86757 -10.75835 -10.58111 -10.50766 -10.38468 -9.88583 -9.63237 -9.61131 -9.27349 -8.41997 -7.90958 -7.26483 -6.07320 -4.11744 1.75797 1.90908 3.29895 3.30877 3.35187 3.37681 4.03851 4.04774 4.11090 4.26777 4.39309 4.45153 4.59199 4.84202 5.10605 5.11862 5.18103 5.24900 5.28933 5.31731 5.42351 5.44173 5.49708 5.58829 5.59284 5.63667 5.67805 5.70054 5.79413 5.82717 6.00781 6.06741 6.11555 6.13560 6.19014 6.46229 6.66410 6.70958 6.81316 6.93556 7.44975 7.55516 7.68597 7.72749 7.87021 8.15587 8.28198 8.93759 9.52251 11.04315 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.039631 B = 0.002426 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.352908 B =11536.768299 C =11886.036629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 C -0.133 4.133 4 C -0.132 4.132 5 C -0.157 4.157 6 C 0.141 3.859 7 H 0.106 0.894 8 N -0.736 5.736 9 C 0.247 3.753 10 C -0.245 4.245 11 C -0.037 4.037 12 C -0.265 4.265 13 C 0.188 3.812 14 O -0.317 6.317 15 C 0.067 3.933 16 C 0.025 3.975 17 C -0.526 4.526 18 H 0.058 0.942 19 C 0.060 3.940 20 N -0.890 5.890 21 Si 0.899 3.101 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.239 4.239 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.399 0.601 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.126 0.874 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.264 0.736 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.940 -4.092 -25.754 27.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.096 4.096 3 C -0.190 4.190 4 C -0.170 4.170 5 C -0.197 4.197 6 C 0.035 3.965 7 H 0.124 0.876 8 N -0.365 5.365 9 C 0.144 3.856 10 C -0.267 4.267 11 C -0.056 4.056 12 C -0.286 4.286 13 C 0.140 3.860 14 O -0.229 6.229 15 C -0.008 4.008 16 C -0.012 4.012 17 C -0.564 4.564 18 H 0.076 0.924 19 C -0.142 4.142 20 N -0.528 5.528 21 Si 0.726 3.274 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.263 4.263 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.235 0.765 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.144 0.856 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.045 0.955 43 H 0.045 0.955 44 H 0.073 0.927 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.857 -3.855 -25.717 27.472 hybrid contribution 0.176 -0.345 0.979 1.053 sum -8.681 -4.200 -24.738 26.551 Atomic orbital electron populations 1.21745 0.93820 1.01815 1.02043 1.22276 0.95700 0.95441 0.96229 1.21573 1.00749 0.94496 1.02227 1.22912 0.98347 0.99153 0.96624 1.23481 0.97998 1.01912 0.96262 1.22510 0.94948 0.95209 0.83871 0.87602 1.44652 1.69569 1.15544 1.06763 1.17404 0.91990 0.91332 0.84825 1.20398 1.13052 0.94592 0.98679 1.20614 0.94727 0.98507 0.91730 1.21137 1.11262 0.95424 1.00754 1.18820 0.89488 0.90243 0.87454 1.86140 1.76094 1.42270 1.18435 1.23307 1.00134 0.96412 0.80901 1.19122 0.96796 0.95077 0.90206 1.20946 1.42363 0.99052 0.94047 0.92401 1.24990 0.95118 0.94964 0.99142 1.69964 1.41287 1.11741 1.29855 0.86548 0.78451 0.79676 0.82688 1.20097 1.21146 1.20091 1.19668 1.14286 1.01516 0.90803 0.92282 0.92516 0.92450 0.92153 0.92015 0.91957 0.89937 0.91058 0.89808 0.91217 0.76498 0.86723 0.86429 0.85633 0.93114 0.93109 0.95452 0.95451 0.92679 0.85888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.19 37.16 0.34 -0.56 16 2 C -0.10 -0.66 1.37 -153.69 -0.21 -0.87 16 3 C -0.13 -0.87 8.05 37.15 0.30 -0.57 16 4 C -0.13 -0.82 7.20 -25.91 -0.19 -1.00 16 5 C -0.16 -1.18 7.53 -25.92 -0.20 -1.38 16 6 C 0.14 1.19 3.50 -67.12 -0.23 0.95 16 7 H 0.11 0.91 6.09 -51.93 -0.32 0.60 16 8 N -0.74 -7.70 5.40 -51.40 -0.28 -7.98 16 9 C 0.25 3.36 6.65 -83.81 -0.56 2.81 16 10 C -0.24 -3.22 9.26 -39.36 -0.36 -3.58 16 11 C -0.04 -0.52 10.03 -39.64 -0.40 -0.91 16 12 C -0.27 -4.42 9.04 -39.39 -0.36 -4.78 16 13 C 0.19 3.47 6.68 -39.25 -0.26 3.21 16 14 O -0.32 -6.81 10.13 -19.39 -0.20 -7.01 16 15 C 0.07 1.48 4.68 37.16 0.17 1.65 16 16 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 17 C -0.53 -14.89 9.11 -34.44 -0.31 -15.20 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 21 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 25 C -0.24 -3.86 9.83 -39.24 -0.39 -4.24 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.34 7.94 -51.93 -0.41 -0.07 16 29 H 0.06 0.38 7.35 -51.93 -0.38 0.00 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.44 7.10 -51.93 -0.37 0.07 16 32 H 0.08 0.45 7.96 -51.93 -0.41 0.04 16 33 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 34 H 0.08 0.67 7.66 -51.93 -0.40 0.27 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.40 3.82 6.67 -40.82 -0.27 3.54 16 37 H 0.11 1.25 6.05 -52.48 -0.32 0.93 16 38 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 39 H 0.13 2.07 6.29 -52.49 -0.33 1.74 16 40 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16 41 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.12 1.88 8.06 -52.48 -0.42 1.46 16 LS Contribution 360.15 15.07 5.43 5.43 Total: -1.00 -30.56 360.15 -9.58 -40.14 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.35 Total: 1.35 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -2.90 Total: -22.34 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.46 Total: -34.04 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.20 Total: -7.01 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.56 -9.58 -40.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311886704.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.922 kcal (2) G-P(sol) polarization free energy of solvation -30.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds