Wall clock time and date at job start Tue Mar 31 2020 05:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 112.85313 * 2 1 4 4 C 1.53787 * 113.61226 * 228.69792 * 2 1 3 5 5 C 1.53782 * 87.08078 * 220.02003 * 4 2 1 6 6 C 1.53776 * 87.08270 * 25.43231 * 5 4 2 7 7 H 1.09000 * 113.69294 * 89.13057 * 6 5 4 8 8 N 1.46497 * 113.61393 * 220.02315 * 6 5 4 9 9 C 1.39673 * 119.99671 * 252.49787 * 8 6 5 10 10 C 1.38971 * 120.04941 * 359.97416 * 9 8 6 11 11 C 1.38105 * 120.03817 * 180.02562 * 10 9 8 12 12 C 1.38223 * 120.12852 * 0.02562 * 11 10 9 13 13 C 1.38773 * 120.09207 * 0.02562 * 12 11 10 14 14 O 1.35890 * 120.01538 * 180.02562 * 13 12 11 15 15 C 1.42894 * 117.00457 * 359.95025 * 14 13 12 16 16 C 1.53001 * 109.47496 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.47391 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99562 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99703 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00379 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99339 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47536 * 60.00433 * 21 19 17 23 23 H 1.48505 * 109.47111 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47577 * 300.00183 * 21 19 17 25 25 C 1.38611 * 119.96162 * 359.97264 * 13 12 11 26 26 H 1.09006 * 109.46725 * 288.79956 * 1 2 3 27 27 H 1.08993 * 109.47113 * 48.79521 * 1 2 3 28 28 H 1.09000 * 109.47404 * 168.80325 * 1 2 3 29 29 H 1.09003 * 109.47135 * 191.19886 * 3 2 1 30 30 H 1.08997 * 109.47292 * 311.20255 * 3 2 1 31 31 H 1.09005 * 109.46944 * 71.20155 * 3 2 1 32 32 H 1.08999 * 113.61036 * 334.56802 * 4 2 1 33 33 H 1.08995 * 113.61840 * 105.38376 * 4 2 1 34 34 H 1.08996 * 113.61180 * 270.88141 * 5 4 2 35 35 H 1.09003 * 113.61137 * 139.98110 * 5 4 2 36 36 H 0.96996 * 120.00820 * 72.49190 * 8 6 5 37 37 H 1.08004 * 119.97746 * 0.02731 * 10 9 8 38 38 H 1.08004 * 119.93958 * 179.97438 * 11 10 9 39 39 H 1.07997 * 119.95126 * 179.97438 * 12 11 10 40 40 H 1.09005 * 109.46897 * 300.00409 * 15 14 13 41 41 H 1.09001 * 109.47284 * 60.00245 * 15 14 13 42 42 H 1.08997 * 109.47079 * 300.00115 * 16 15 14 43 43 H 1.09001 * 109.47111 * 59.99579 * 16 15 14 44 44 H 0.96994 * 119.99951 * 180.02562 * 20 19 17 45 45 H 1.08005 * 120.06230 * 180.29536 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4098 0.0000 4 6 2.1460 -0.9301 -1.0586 5 6 3.1923 -1.3137 0.0011 6 6 2.1461 -0.9282 1.0601 7 1 1.4940 -1.7516 1.3516 8 7 2.7093 -0.2145 2.2088 9 6 2.8214 -0.8573 3.4438 10 6 2.3985 -2.1737 3.5840 11 6 2.5090 -2.8089 4.8054 12 6 3.0396 -2.1377 5.8910 13 6 3.4625 -0.8227 5.7572 14 8 3.9843 -0.1645 6.8254 15 6 4.0668 -0.8868 8.0556 16 6 4.6749 0.0114 9.1347 17 6 4.7613 -0.7502 10.4323 18 1 4.4172 -1.7727 10.4821 19 6 5.2805 -0.1419 11.5554 20 7 5.6998 1.1031 11.4945 21 14 5.3881 -1.0862 13.1635 22 1 6.2439 -2.2854 12.9771 23 1 5.9794 -0.2148 14.2106 24 1 4.0273 -1.5093 13.5813 25 6 3.3534 -0.1816 4.5332 26 1 -0.3633 0.3312 0.9729 27 1 -0.3633 0.6769 -0.7731 28 1 -0.3634 -1.0081 -0.1995 29 1 3.1943 1.3531 -0.1996 30 1 1.6415 2.0076 -0.7732 31 1 1.9601 1.8733 0.9729 32 1 1.4944 -1.7547 -1.3474 33 1 2.5636 -0.4008 -1.9150 34 1 4.0710 -0.6688 0.0005 35 1 3.4442 -2.3742 0.0020 36 1 3.0044 0.7044 2.1119 37 1 1.9833 -2.7002 2.7374 38 1 2.1795 -3.8318 4.9127 39 1 3.1243 -2.6370 6.8448 40 1 3.0679 -1.1973 8.3623 41 1 4.6949 -1.7671 7.9188 42 1 5.6737 0.3222 8.8283 43 1 4.0465 0.8914 9.2715 44 1 6.0654 1.5309 12.2845 45 1 3.6865 0.8402 4.4260 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000311886704.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:22 Heat of formation + Delta-G solvation = -25.354746 kcal Electronic energy + Delta-G solvation = -22154.744605 eV Core-core repulsion = 18943.633753 eV Total energy + Delta-G solvation = -3211.110852 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.33962 -40.63299 -38.57280 -35.53818 -34.88193 -32.57130 -31.59101 -30.81155 -29.59225 -28.33454 -27.05277 -25.53358 -23.85701 -23.43275 -23.02490 -21.72729 -19.40207 -19.31061 -18.29683 -17.44868 -16.90960 -16.78131 -16.71751 -16.57128 -16.03420 -15.60609 -15.08365 -14.53342 -14.38838 -14.34652 -14.29384 -14.08695 -13.80791 -13.48783 -13.23380 -13.14729 -13.00793 -12.79467 -12.55805 -12.49422 -12.34529 -12.32623 -11.97385 -11.71208 -11.59020 -11.53338 -11.39054 -11.20598 -11.08441 -10.62951 -10.60988 -9.22157 -8.30395 -8.26295 -6.40200 0.57753 0.69891 1.40914 1.45333 1.53238 2.18971 2.41620 2.77345 2.95542 3.07832 3.47453 3.66802 3.81081 3.99210 4.00510 4.25463 4.27775 4.28874 4.30905 4.36281 4.49430 4.57497 4.64825 4.70105 4.72112 4.75036 4.79396 4.94418 4.98064 5.01308 5.06750 5.12761 5.19068 5.27606 5.30366 5.33780 5.47027 5.47762 5.51840 5.53965 5.66957 5.67585 5.79269 6.07518 6.46789 6.62503 6.74354 6.81685 7.29781 8.86805 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.039631 B = 0.002426 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.352908 B =11536.768299 C =11886.036629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 C -0.134 4.134 4 C -0.122 4.122 5 C -0.156 4.156 6 C 0.130 3.870 7 H 0.110 0.890 8 N -0.727 5.727 9 C 0.254 3.746 10 C -0.238 4.238 11 C -0.031 4.031 12 C -0.283 4.283 13 C 0.153 3.847 14 O -0.343 6.343 15 C 0.087 3.913 16 C 0.029 3.971 17 C -0.547 4.547 18 H 0.071 0.929 19 C 0.001 3.999 20 N -0.932 5.932 21 Si 0.977 3.023 22 H -0.263 1.263 23 H -0.282 1.282 24 H -0.263 1.263 25 C -0.256 4.256 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.402 0.598 37 H 0.145 0.855 38 H 0.150 0.850 39 H 0.121 0.879 40 H 0.059 0.941 41 H 0.059 0.941 42 H -0.003 1.003 43 H -0.002 1.002 44 H 0.267 0.733 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.117 -6.243 -27.397 29.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.093 4.093 3 C -0.192 4.192 4 C -0.160 4.160 5 C -0.196 4.196 6 C 0.024 3.976 7 H 0.128 0.872 8 N -0.356 5.356 9 C 0.149 3.851 10 C -0.260 4.260 11 C -0.050 4.050 12 C -0.304 4.304 13 C 0.106 3.894 14 O -0.257 6.257 15 C 0.012 3.988 16 C -0.009 4.009 17 C -0.584 4.584 18 H 0.089 0.911 19 C -0.198 4.198 20 N -0.571 5.571 21 Si 0.800 3.200 22 H -0.188 1.188 23 H -0.207 1.207 24 H -0.188 1.188 25 C -0.279 4.279 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.239 0.761 37 H 0.163 0.837 38 H 0.167 0.833 39 H 0.139 0.861 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.076 0.924 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.050 -6.006 -27.423 29.818 hybrid contribution 0.496 0.372 1.267 1.411 sum -9.554 -5.634 -26.156 28.410 Atomic orbital electron populations 1.21746 0.93457 1.02535 1.01610 1.22272 0.95938 0.95376 0.95730 1.21589 1.00948 0.94549 1.02091 1.22892 0.97694 0.99177 0.96249 1.23451 0.97846 1.01958 0.96303 1.22810 0.95648 0.95775 0.83324 0.87209 1.44812 1.68682 1.15786 1.06279 1.17494 0.90815 0.91667 0.85148 1.20770 1.11671 0.94203 0.99334 1.20965 0.93317 0.99748 0.90969 1.21215 1.12511 0.94895 1.01747 1.19150 0.91588 0.91512 0.87132 1.86049 1.77599 1.43144 1.18919 1.22839 1.00185 0.95155 0.80589 1.18968 0.94878 0.94953 0.92071 1.21371 1.42543 0.99778 0.94755 0.91105 1.26064 0.94345 0.95924 1.03442 1.70115 1.42087 1.13680 1.31201 0.85321 0.79093 0.78282 0.77270 1.18797 1.20721 1.18781 1.19779 1.15351 1.01745 0.91038 0.93533 0.91762 0.91575 0.92063 0.91123 0.92788 0.88736 0.90346 0.90430 0.90943 0.76103 0.83739 0.83254 0.86058 0.92277 0.92274 0.98409 0.98407 0.92421 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.19 71.98 0.66 -0.82 16 2 C -0.09 -1.05 1.37 -51.65 -0.07 -1.12 16 3 C -0.13 -1.54 8.05 71.98 0.58 -0.96 16 4 C -0.12 -1.14 7.20 31.12 0.22 -0.92 16 5 C -0.16 -1.96 7.53 31.12 0.23 -1.73 16 6 C 0.13 1.87 3.50 45.52 0.16 2.03 16 7 H 0.11 1.52 6.09 -2.39 -0.01 1.51 16 8 N -0.73 -14.17 5.40 -316.52 -1.71 -15.88 16 9 C 0.25 6.61 6.65 38.20 0.25 6.86 16 10 C -0.24 -5.63 9.26 22.41 0.21 -5.42 16 11 C -0.03 -0.81 10.03 22.23 0.22 -0.59 16 12 C -0.28 -9.38 9.04 22.39 0.20 -9.18 16 13 C 0.15 5.80 6.68 22.49 0.15 5.95 16 14 O -0.34 -15.57 10.13 -92.31 -0.94 -16.50 16 15 C 0.09 4.01 4.68 71.98 0.34 4.34 16 16 C 0.03 1.61 5.34 29.85 0.16 1.77 16 17 C -0.55 -31.60 9.11 25.60 0.23 -31.37 16 18 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 19 C 0.00 0.04 5.46 84.66 0.46 0.50 16 20 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 21 Si 0.98 44.12 29.54 68.60 2.03 46.15 16 22 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 25 C -0.26 -8.40 9.83 22.49 0.22 -8.18 16 26 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.60 7.94 -2.39 -0.02 0.58 16 29 H 0.06 0.69 7.35 -2.39 -0.02 0.67 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.71 7.10 -2.38 -0.02 0.69 16 32 H 0.09 0.70 7.96 -2.39 -0.02 0.68 16 33 H 0.08 0.66 8.10 -2.39 -0.02 0.64 16 34 H 0.08 1.09 7.66 -2.39 -0.02 1.07 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.40 7.37 6.67 -92.71 -0.62 6.75 16 37 H 0.15 2.56 6.05 -2.91 -0.02 2.54 16 38 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 39 H 0.12 4.02 6.29 -2.91 -0.02 4.00 16 40 H 0.06 2.58 7.66 -2.38 -0.02 2.57 16 41 H 0.06 2.59 7.66 -2.39 -0.02 2.57 16 42 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 43 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 44 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 45 H 0.12 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -67.87 360.15 4.25 -63.61 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.35 Total: 18.81 kcal Atomic # 6 Polarization: -43.05 SS G_CDS: 4.24 Total: -38.82 kcal Atomic # 7 Polarization: -71.83 SS G_CDS: -1.42 Total: -73.26 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.94 Total: -16.50 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -67.87 4.25 -63.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311886704.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.257 kcal (2) G-P(sol) polarization free energy of solvation -67.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds