Wall clock time and date at job start Tue Mar 31 2020 06:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47285 * 2 1 4 4 C 1.52994 * 109.47285 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46973 * 180.02562 * 4 3 2 6 6 C 1.53008 * 109.46841 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.46594 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46608 * 179.97438 * 7 6 5 9 9 O 1.21288 * 120.00174 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99820 * 179.97438 * 8 7 6 11 11 C 1.39932 * 119.99622 * 174.88873 * 10 8 7 12 12 C 1.39298 * 119.94435 * 145.78537 * 11 10 8 13 13 C 1.38484 * 120.43191 * 179.97438 * 12 11 10 14 14 C 1.37689 * 120.32095 * 359.97438 * 13 12 11 15 15 C 1.40746 * 119.88202 * 0.02831 * 14 13 12 16 16 C 1.41409 * 120.20415 * 179.97438 * 15 14 13 17 17 H 1.08008 * 119.99538 * 205.17474 * 16 15 14 18 18 C 1.39928 * 120.00795 * 25.17334 * 16 15 14 19 19 N 1.30837 * 119.99653 * 16.78957 * 18 16 15 20 20 Si 1.86796 * 120.00405 * 196.79614 * 18 16 15 21 21 H 1.48497 * 109.47245 * 59.99581 * 20 18 16 22 22 H 1.48503 * 109.47296 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46929 * 299.99699 * 20 18 16 24 24 C 1.38245 * 119.95416 * 325.51666 * 11 10 8 25 25 H 1.09002 * 109.47403 * 299.99648 * 1 2 3 26 26 H 1.08995 * 109.47573 * 60.00057 * 1 2 3 27 27 H 1.09000 * 109.47329 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47192 * 239.99890 * 2 1 3 29 29 H 1.09001 * 109.46922 * 120.00148 * 2 1 3 30 30 H 1.09005 * 109.47095 * 59.99831 * 3 2 1 31 31 H 1.08999 * 109.47257 * 300.00485 * 3 2 1 32 32 H 1.09002 * 109.47403 * 60.00352 * 4 3 2 33 33 H 1.09007 * 109.47314 * 299.99552 * 4 3 2 34 34 H 1.08993 * 109.47196 * 60.00003 * 5 4 3 35 35 H 1.09001 * 109.47196 * 299.99709 * 5 4 3 36 36 H 1.08996 * 109.46781 * 60.00332 * 6 5 4 37 37 H 1.09001 * 109.47016 * 299.99854 * 6 5 4 38 38 H 1.08997 * 109.47074 * 299.99767 * 7 6 5 39 39 H 1.08996 * 109.47043 * 60.00790 * 7 6 5 40 40 H 0.96994 * 119.99619 * 354.89984 * 10 8 7 41 41 H 1.07996 * 119.78198 * 359.97438 * 12 11 10 42 42 H 1.07999 * 119.84301 * 180.02562 * 13 12 11 43 43 H 1.07996 * 120.06066 * 179.97438 * 14 13 12 44 44 H 0.97000 * 119.99997 * 180.02562 * 19 18 16 45 45 H 1.08004 * 120.15628 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4424 0.0006 5 6 4.0799 2.8850 0.0013 6 6 5.6100 2.8850 0.0026 7 6 6.1199 4.3275 0.0026 8 6 7.6269 4.3275 0.0045 9 8 8.2334 3.2771 0.0053 10 7 8.3008 5.4948 0.0043 11 6 9.6958 5.4972 0.1140 12 6 10.4440 6.4647 -0.5527 13 6 11.8251 6.4768 -0.4507 14 6 12.4741 5.5320 0.3121 15 6 11.7313 4.5483 0.9914 16 6 12.3908 3.5743 1.7762 17 1 11.9214 2.6187 1.9577 18 6 13.6516 3.8485 2.3177 19 7 14.0793 5.0830 2.3871 20 14 14.7241 2.4521 2.9414 21 1 15.0087 1.5113 1.8282 22 1 16.0012 3.0031 3.4618 23 1 14.0154 1.7316 4.0294 24 6 10.3290 4.5429 0.8884 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 3.9337 0.9285 -0.8891 33 1 3.9329 0.9288 0.8909 34 1 3.7162 3.3985 0.8912 35 1 3.7170 3.3991 -0.8887 36 1 5.9740 2.3713 -0.8872 37 1 5.9725 2.3710 0.8928 38 1 5.7573 4.8411 -0.8879 39 1 5.7559 4.8415 0.8921 40 1 7.8187 6.3330 -0.0717 41 1 9.9438 7.2101 -1.1531 42 1 12.3958 7.2315 -0.9714 43 1 13.5513 5.5451 0.3883 44 1 14.9535 5.2731 2.7622 45 1 9.7494 3.7953 1.4095 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313447227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:30 Heat of formation + Delta-G solvation = -78.080109 kcal Electronic energy + Delta-G solvation = -21616.548725 eV Core-core repulsion = 18403.151530 eV Total energy + Delta-G solvation = -3213.397195 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.22027 -39.06684 -37.53249 -36.21015 -35.08381 -34.80976 -31.88152 -31.76324 -29.96045 -27.62801 -27.23021 -24.42997 -23.01559 -22.62005 -21.86854 -21.67225 -20.93892 -19.50479 -17.98965 -17.41037 -17.13250 -16.82410 -16.50331 -16.34110 -15.46471 -15.30924 -14.92860 -14.84587 -14.62470 -14.17190 -14.09876 -13.88976 -13.53875 -13.15109 -13.01216 -12.96110 -12.89905 -12.77750 -12.74428 -12.20013 -12.10448 -11.98635 -11.93856 -11.73890 -11.54863 -11.47383 -11.31449 -11.29964 -11.15167 -10.86437 -10.58623 -9.41391 -8.75945 -8.61411 -6.38768 0.87155 0.99301 1.34509 1.45865 1.49446 1.84858 2.19310 2.31262 2.72402 3.68391 3.75375 3.82731 4.00528 4.17308 4.20734 4.23365 4.44504 4.45701 4.51669 4.62156 4.68442 4.74007 4.76864 4.89337 4.99133 5.03249 5.04051 5.05172 5.08312 5.12096 5.15280 5.24366 5.27083 5.31822 5.32302 5.33890 5.46869 5.53121 5.57574 5.76378 5.86088 6.06553 6.09983 6.33903 6.66491 6.69427 6.92166 6.99923 7.39122 8.31690 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020039 B = 0.002556 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.954566 B =10951.188121 C =12192.710510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.130 4.130 3 C -0.115 4.115 4 C -0.123 4.123 5 C -0.109 4.109 6 C -0.104 4.104 7 C -0.123 4.123 8 C 0.494 3.506 9 O -0.574 6.574 10 N -0.661 5.661 11 C 0.156 3.844 12 C -0.252 4.252 13 C -0.092 4.092 14 C -0.199 4.199 15 C 0.087 3.913 16 C -0.503 4.503 17 H 0.062 0.938 18 C 0.037 3.963 19 N -0.821 5.821 20 Si 0.982 3.018 21 H -0.263 1.263 22 H -0.259 1.259 23 H -0.263 1.263 24 C -0.239 4.239 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.045 0.955 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.422 0.578 41 H 0.133 0.867 42 H 0.123 0.877 43 H 0.104 0.896 44 H 0.290 0.710 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.184 -0.820 -4.248 21.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C -0.152 4.152 4 C -0.161 4.161 5 C -0.146 4.146 6 C -0.142 4.142 7 C -0.163 4.163 8 C 0.283 3.717 9 O -0.453 6.453 10 N -0.307 5.307 11 C 0.063 3.937 12 C -0.273 4.273 13 C -0.110 4.110 14 C -0.219 4.219 15 C 0.084 3.916 16 C -0.533 4.533 17 H 0.080 0.920 18 C -0.178 4.178 19 N -0.447 5.447 20 Si 0.802 3.198 21 H -0.187 1.187 22 H -0.183 1.183 23 H -0.187 1.187 24 C -0.260 4.260 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.260 0.740 41 H 0.151 0.849 42 H 0.141 0.859 43 H 0.122 0.878 44 H 0.101 0.899 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.638 -1.410 -4.143 21.097 hybrid contribution 0.746 -0.371 0.447 0.946 sum -19.891 -1.781 -3.696 20.310 Atomic orbital electron populations 1.21771 0.95282 1.01827 1.02037 1.21572 0.96394 0.97071 1.01714 1.21585 0.94450 0.96764 1.02430 1.21615 0.96025 0.96918 1.01543 1.21547 0.92694 0.97094 1.03282 1.21328 0.96515 0.94670 1.01718 1.21741 0.86994 1.00490 1.07043 1.21927 0.92386 0.82765 0.74586 1.90738 1.71772 1.33110 1.49633 1.43489 1.04690 1.10163 1.72405 1.17575 0.82917 0.97053 0.96157 1.20500 0.93645 1.04329 1.08867 1.20853 0.94312 0.97868 0.97999 1.21301 0.99363 0.99451 1.01752 1.17858 0.91163 0.92382 0.90189 1.19702 1.02802 1.01081 1.29712 0.92024 1.26711 0.98352 0.98936 0.93787 1.69853 1.19581 1.21140 1.34146 0.85269 0.77329 0.78102 0.79065 1.18746 1.18280 1.18707 1.20927 0.94199 1.03707 1.07217 0.92550 0.92421 0.92614 0.92378 0.92552 0.91652 0.91422 0.92651 0.92964 0.90747 0.90342 0.93108 0.93646 0.85557 0.86213 0.73961 0.84942 0.85865 0.87784 0.89948 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 71.98 0.71 -0.98 16 2 C -0.13 -1.73 5.93 30.59 0.18 -1.54 16 3 C -0.11 -1.51 5.21 30.59 0.16 -1.35 16 4 C -0.12 -2.01 5.21 30.59 0.16 -1.85 16 5 C -0.11 -1.67 5.22 30.60 0.16 -1.51 16 6 C -0.10 -2.36 4.50 30.60 0.14 -2.22 16 7 C -0.12 -2.55 5.70 29.85 0.17 -2.38 16 8 C 0.49 17.08 7.56 87.66 0.66 17.75 16 9 O -0.57 -26.77 13.74 -3.06 -0.04 -26.81 16 10 N -0.66 -22.58 5.34 -303.63 -1.62 -24.20 16 11 C 0.16 7.16 6.25 38.10 0.24 7.40 16 12 C -0.25 -10.75 9.97 22.58 0.23 -10.53 16 13 C -0.09 -4.26 10.02 22.20 0.22 -4.04 16 14 C -0.20 -10.93 8.69 22.75 0.20 -10.73 16 15 C 0.09 5.12 5.57 -21.31 -0.12 5.01 16 16 C -0.50 -29.85 9.05 23.46 0.21 -29.64 16 17 H 0.06 3.67 7.90 -2.91 -0.02 3.65 16 18 C 0.04 1.99 5.16 85.25 0.44 2.43 16 19 N -0.82 -44.50 10.94 21.82 0.24 -44.26 16 20 Si 0.98 40.73 29.59 68.60 2.03 42.76 16 21 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 22 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 23 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 24 C -0.24 -13.22 8.39 22.85 0.19 -13.03 16 25 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.79 8.14 -2.38 -0.02 0.78 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.05 1.33 8.10 -2.39 -0.02 1.31 16 37 H 0.04 1.24 8.10 -2.39 -0.02 1.22 16 38 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.42 10.06 8.82 -92.71 -0.82 9.24 16 41 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 42 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 43 H 0.10 5.91 6.17 -2.91 -0.02 5.89 16 44 H 0.29 14.07 8.30 -92.71 -0.77 13.30 16 45 H 0.08 4.80 6.49 -2.91 -0.02 4.78 16 Total: -1.00 -72.68 369.10 4.69 -67.98 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: 0.14 Total: 31.73 kcal Atomic # 6 Polarization: -51.17 SS G_CDS: 3.95 Total: -47.21 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: -1.38 Total: -68.46 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.04 Total: -26.81 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -72.68 4.69 -67.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313447227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.096 kcal (2) G-P(sol) polarization free energy of solvation -72.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds