Wall clock time and date at job start Tue Mar 31 2020 06:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47100 * 2 1 4 4 C 1.52999 * 109.47100 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47100 * 179.97438 * 4 3 2 6 6 H 1.09006 * 109.46977 * 304.99941 * 5 4 3 7 7 C 1.52994 * 109.47268 * 64.99520 * 5 4 3 8 8 C 1.52997 * 109.47216 * 180.91446 * 7 5 4 9 9 C 1.50697 * 109.47191 * 185.00192 * 5 4 3 10 10 O 1.21288 * 119.99984 * 322.02083 * 9 5 4 11 11 N 1.34776 * 120.00498 * 142.01917 * 9 5 4 12 12 C 1.39931 * 120.00303 * 186.12679 * 11 9 5 13 13 C 1.39291 * 119.94544 * 324.22713 * 12 11 9 14 14 C 1.38492 * 120.42537 * 179.76839 * 13 12 11 15 15 C 1.37682 * 120.32279 * 0.50583 * 14 13 12 16 16 C 1.40739 * 119.88342 * 359.75108 * 15 14 13 17 17 C 1.41407 * 120.20782 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00157 * 151.39656 * 17 16 15 19 19 C 1.39935 * 120.00044 * 331.39392 * 17 16 15 20 20 N 1.30834 * 120.00084 * 166.46515 * 19 17 16 21 21 Si 1.86803 * 120.00043 * 346.46512 * 19 17 16 22 22 H 1.48502 * 109.46918 * 89.72435 * 21 19 17 23 23 H 1.48496 * 109.47469 * 209.72298 * 21 19 17 24 24 H 1.48504 * 109.46936 * 329.72627 * 21 19 17 25 25 C 1.38240 * 119.94866 * 144.50322 * 12 11 9 26 26 H 1.09004 * 109.47369 * 300.00025 * 1 2 3 27 27 H 1.09002 * 109.47045 * 60.00242 * 1 2 3 28 28 H 1.09000 * 109.47248 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46899 * 239.99885 * 2 1 3 30 30 H 1.09002 * 109.47045 * 119.99758 * 2 1 3 31 31 H 1.09002 * 109.46974 * 299.99802 * 3 2 1 32 32 H 1.09000 * 109.47352 * 59.99367 * 3 2 1 33 33 H 1.09002 * 109.47045 * 299.99758 * 4 3 2 34 34 H 1.08999 * 109.46899 * 59.99885 * 4 3 2 35 35 H 1.08999 * 109.47720 * 300.91989 * 7 5 4 36 36 H 1.09007 * 109.46777 * 60.91824 * 7 5 4 37 37 H 1.09001 * 109.47592 * 292.68107 * 8 7 5 38 38 H 1.08998 * 109.47085 * 52.68043 * 8 7 5 39 39 H 1.09001 * 109.47197 * 172.67649 * 8 7 5 40 40 H 0.97003 * 119.99638 * 6.12706 * 11 9 5 41 41 H 1.07999 * 119.78945 * 0.02562 * 13 12 11 42 42 H 1.08004 * 119.83724 * 180.24006 * 14 13 12 43 43 H 1.08000 * 120.05731 * 179.76950 * 15 14 13 44 44 H 0.96999 * 119.99873 * 179.97438 * 20 19 17 45 45 H 1.08002 * 120.16432 * 359.95158 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6457 3.4235 -0.8424 7 6 3.6746 3.5699 1.3067 8 6 4.1648 5.0191 1.2963 9 6 5.5819 2.8868 -0.1232 10 8 6.2382 2.0415 0.4475 11 7 6.1960 3.8276 -0.8677 12 6 7.5760 3.7553 -1.0875 13 6 8.4168 3.2864 -0.0808 14 6 9.7836 3.2062 -0.2893 15 6 10.3276 3.5992 -1.4914 16 6 9.4910 4.0802 -2.5159 17 6 10.0424 4.4852 -3.7535 18 1 9.4548 4.4110 -4.6566 19 6 11.3494 4.9822 -3.8079 20 7 11.9541 5.1074 -4.9614 21 14 12.2307 5.4670 -2.2338 22 1 12.9590 4.2916 -1.6922 23 1 13.1963 6.5575 -2.5228 24 1 11.2373 5.9371 -1.2351 25 6 8.1034 4.1547 -2.3013 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.9329 0.9288 0.8909 34 1 3.9336 0.9285 -0.8891 35 1 2.5890 3.5542 1.4036 36 1 4.1222 3.0409 2.1481 37 1 5.2542 5.0345 1.3306 38 1 3.8230 5.5118 0.3861 39 1 3.7665 5.5437 2.1648 40 1 5.6812 4.5548 -1.2512 41 1 7.9997 2.9794 0.8669 42 1 10.4263 2.8375 0.4965 43 1 11.3945 3.5384 -1.6481 44 1 12.8599 5.4523 -4.9991 45 1 7.4527 4.5220 -3.0812 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313458656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:23 Heat of formation + Delta-G solvation = -52.317699 kcal Electronic energy + Delta-G solvation = -22661.337691 eV Core-core repulsion = 19449.057637 eV Total energy + Delta-G solvation = -3212.280053 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.17586 -37.80503 -36.46613 -34.46636 -34.25404 -33.15001 -30.71166 -30.28082 -28.93434 -26.85595 -25.09539 -23.10454 -23.05243 -21.42025 -21.07620 -20.51341 -19.39406 -17.71397 -17.04853 -16.00705 -15.73653 -15.44732 -15.19984 -14.46790 -14.45728 -14.13107 -13.82121 -13.75057 -13.37388 -13.21593 -12.81374 -12.65787 -12.58025 -12.29082 -11.98791 -11.75037 -11.67649 -11.48021 -11.29152 -11.15430 -11.02004 -10.90755 -10.77705 -10.68992 -10.59094 -10.51737 -10.10670 -9.68500 -9.38209 -9.30456 -8.85495 -7.66755 -7.15406 -6.91350 -4.49281 2.37899 2.65168 3.07057 3.14739 3.24364 3.33934 3.52949 3.99808 4.50642 4.53116 4.61559 4.72448 4.82294 4.94083 4.96728 5.19335 5.23437 5.36922 5.37664 5.44746 5.51440 5.56480 5.60272 5.71134 5.80281 5.82535 5.88903 5.97621 6.03012 6.06490 6.11370 6.17532 6.25426 6.37629 6.43578 6.57440 6.75259 6.82850 7.16684 7.35775 7.50659 7.68981 7.86472 7.95325 8.15316 8.35836 8.57504 8.67167 8.82509 10.11425 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028395 B = 0.003177 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.840190 B = 8810.918488 C = 9090.526929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.104 4.104 5 C -0.105 4.105 6 H 0.087 0.913 7 C -0.112 4.112 8 C -0.162 4.162 9 C 0.514 3.486 10 O -0.523 6.523 11 N -0.669 5.669 12 C 0.165 3.835 13 C -0.230 4.230 14 C -0.069 4.069 15 C -0.249 4.249 16 C 0.105 3.895 17 C -0.447 4.447 18 H 0.089 0.911 19 C 0.082 3.918 20 N -0.815 5.815 21 Si 0.920 3.080 22 H -0.270 1.270 23 H -0.295 1.295 24 H -0.246 1.246 25 C -0.232 4.232 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.401 0.599 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.285 0.715 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.009 -2.238 9.455 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.142 4.142 5 C -0.126 4.126 6 H 0.105 0.895 7 C -0.149 4.149 8 C -0.219 4.219 9 C 0.301 3.699 10 O -0.398 6.398 11 N -0.313 5.313 12 C 0.073 3.927 13 C -0.251 4.251 14 C -0.088 4.088 15 C -0.268 4.268 16 C 0.102 3.898 17 C -0.476 4.476 18 H 0.107 0.893 19 C -0.136 4.136 20 N -0.439 5.439 21 Si 0.748 3.252 22 H -0.197 1.197 23 H -0.223 1.223 24 H -0.169 1.169 25 C -0.254 4.254 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.236 0.764 41 H 0.130 0.870 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.095 0.905 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.387 -2.793 9.648 20.080 hybrid contribution 0.335 0.595 0.177 0.705 sum -17.053 -2.198 9.825 19.803 Atomic orbital electron populations 1.21777 0.96026 1.01473 1.01683 1.21534 0.95622 0.97001 1.02240 1.21675 0.95028 0.96853 1.02124 1.21451 0.94965 0.94207 1.03536 1.21403 0.92138 0.98926 1.00164 0.89489 1.21526 1.01401 0.95852 0.96169 1.21904 1.02059 0.96006 1.01951 1.20623 0.89914 0.80850 0.78519 1.90688 1.66641 1.37859 1.44634 1.43620 1.07937 1.27627 1.52089 1.17554 0.80693 1.00227 0.94237 1.20498 0.92635 1.12847 0.99126 1.20517 0.94272 0.97888 0.96118 1.21143 0.98792 1.10614 0.96302 1.17493 0.90938 0.89045 0.92353 1.19442 0.97541 1.36412 0.94199 0.89257 1.26156 0.96716 0.92754 0.97983 1.69662 1.13209 1.34014 1.27029 0.86261 0.79114 0.77738 0.82113 1.19716 1.22350 1.16895 1.20712 0.95820 1.13704 0.95119 0.92851 0.92806 0.92912 0.91969 0.91956 0.91978 0.91665 0.90673 0.91585 0.90721 0.91151 0.92197 0.92442 0.92350 0.76444 0.86964 0.88534 0.87982 0.90486 0.87948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.13 -1.01 5.93 -26.73 -0.16 -1.17 16 3 C -0.12 -0.98 4.97 -26.73 -0.13 -1.11 16 4 C -0.10 -1.12 4.30 -26.73 -0.11 -1.24 16 5 C -0.10 -1.17 2.23 -91.78 -0.20 -1.38 16 6 H 0.09 0.81 8.11 -51.93 -0.42 0.39 16 7 C -0.11 -1.08 5.22 -26.74 -0.14 -1.22 16 8 C -0.16 -1.57 9.50 37.16 0.35 -1.21 16 9 C 0.51 8.29 5.62 -10.99 -0.06 8.22 16 10 O -0.52 -10.52 13.86 5.55 0.08 -10.44 16 11 N -0.67 -11.17 5.10 -9.91 -0.05 -11.22 16 12 C 0.16 3.54 6.28 -83.77 -0.53 3.02 16 13 C -0.23 -5.21 8.71 -39.10 -0.34 -5.55 16 14 C -0.07 -1.59 10.02 -39.69 -0.40 -1.99 16 15 C -0.25 -6.20 7.10 -38.84 -0.28 -6.47 16 16 C 0.11 2.71 5.19 -106.85 -0.55 2.15 16 17 C -0.45 -12.18 9.61 -37.74 -0.36 -12.54 16 18 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 19 C 0.08 2.17 5.46 -17.34 -0.09 2.08 16 20 N -0.81 -21.92 13.93 55.55 0.77 -21.15 16 21 Si 0.92 21.26 24.38 -169.99 -4.15 17.12 16 22 H -0.27 -6.11 6.49 56.52 0.37 -5.74 16 23 H -0.30 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.25 -5.78 6.81 56.52 0.39 -5.40 16 25 C -0.23 -5.37 9.71 -38.69 -0.38 -5.75 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.49 6.55 -51.93 -0.34 0.15 16 33 H 0.07 0.90 8.02 -51.93 -0.42 0.48 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.57 6.52 -51.93 -0.34 0.23 16 36 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 37 H 0.06 0.72 7.37 -51.93 -0.38 0.34 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.40 5.35 8.80 -40.82 -0.36 4.99 16 41 H 0.11 2.52 6.21 -52.49 -0.33 2.19 16 42 H 0.10 1.97 8.06 -52.48 -0.42 1.55 16 43 H 0.10 2.53 4.05 -52.49 -0.21 2.31 16 44 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 45 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 LS Contribution 356.95 15.07 5.38 5.38 Total: -1.00 -30.02 356.95 -8.46 -38.48 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -7.48 Total: 6.67 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -3.02 Total: -24.83 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: 0.72 Total: -32.37 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.15 Total: 17.12 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.02 -8.46 -38.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313458656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.837 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds