Wall clock time and date at job start Tue Mar 31 2020 06:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47100 * 2 1 4 4 C 1.52999 * 109.47100 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47100 * 179.97438 * 4 3 2 6 6 H 1.09006 * 109.46977 * 304.99941 * 5 4 3 7 7 C 1.52994 * 109.47268 * 64.99520 * 5 4 3 8 8 C 1.52997 * 109.47216 * 180.91446 * 7 5 4 9 9 C 1.50697 * 109.47191 * 185.00192 * 5 4 3 10 10 O 1.21288 * 119.99984 * 322.02083 * 9 5 4 11 11 N 1.34776 * 120.00498 * 142.01917 * 9 5 4 12 12 C 1.39931 * 120.00303 * 186.12679 * 11 9 5 13 13 C 1.39291 * 119.94544 * 324.22713 * 12 11 9 14 14 C 1.38492 * 120.42537 * 179.76839 * 13 12 11 15 15 C 1.37682 * 120.32279 * 0.50583 * 14 13 12 16 16 C 1.40739 * 119.88342 * 359.75108 * 15 14 13 17 17 C 1.41407 * 120.20782 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00157 * 151.39656 * 17 16 15 19 19 C 1.39935 * 120.00044 * 331.39392 * 17 16 15 20 20 N 1.30834 * 120.00084 * 166.46515 * 19 17 16 21 21 Si 1.86803 * 120.00043 * 346.46512 * 19 17 16 22 22 H 1.48502 * 109.46918 * 89.72435 * 21 19 17 23 23 H 1.48496 * 109.47469 * 209.72298 * 21 19 17 24 24 H 1.48504 * 109.46936 * 329.72627 * 21 19 17 25 25 C 1.38240 * 119.94866 * 144.50322 * 12 11 9 26 26 H 1.09004 * 109.47369 * 300.00025 * 1 2 3 27 27 H 1.09002 * 109.47045 * 60.00242 * 1 2 3 28 28 H 1.09000 * 109.47248 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46899 * 239.99885 * 2 1 3 30 30 H 1.09002 * 109.47045 * 119.99758 * 2 1 3 31 31 H 1.09002 * 109.46974 * 299.99802 * 3 2 1 32 32 H 1.09000 * 109.47352 * 59.99367 * 3 2 1 33 33 H 1.09002 * 109.47045 * 299.99758 * 4 3 2 34 34 H 1.08999 * 109.46899 * 59.99885 * 4 3 2 35 35 H 1.08999 * 109.47720 * 300.91989 * 7 5 4 36 36 H 1.09007 * 109.46777 * 60.91824 * 7 5 4 37 37 H 1.09001 * 109.47592 * 292.68107 * 8 7 5 38 38 H 1.08998 * 109.47085 * 52.68043 * 8 7 5 39 39 H 1.09001 * 109.47197 * 172.67649 * 8 7 5 40 40 H 0.97003 * 119.99638 * 6.12706 * 11 9 5 41 41 H 1.07999 * 119.78945 * 0.02562 * 13 12 11 42 42 H 1.08004 * 119.83724 * 180.24006 * 14 13 12 43 43 H 1.08000 * 120.05731 * 179.76950 * 15 14 13 44 44 H 0.96999 * 119.99873 * 179.97438 * 20 19 17 45 45 H 1.08002 * 120.16432 * 359.95158 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6457 3.4235 -0.8424 7 6 3.6746 3.5699 1.3067 8 6 4.1648 5.0191 1.2963 9 6 5.5819 2.8868 -0.1232 10 8 6.2382 2.0415 0.4475 11 7 6.1960 3.8276 -0.8677 12 6 7.5760 3.7553 -1.0875 13 6 8.4168 3.2864 -0.0808 14 6 9.7836 3.2062 -0.2893 15 6 10.3276 3.5992 -1.4914 16 6 9.4910 4.0802 -2.5159 17 6 10.0424 4.4852 -3.7535 18 1 9.4548 4.4110 -4.6566 19 6 11.3494 4.9822 -3.8079 20 7 11.9541 5.1074 -4.9614 21 14 12.2307 5.4670 -2.2338 22 1 12.9590 4.2916 -1.6922 23 1 13.1963 6.5575 -2.5228 24 1 11.2373 5.9371 -1.2351 25 6 8.1034 4.1547 -2.3013 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.9329 0.9288 0.8909 34 1 3.9336 0.9285 -0.8891 35 1 2.5890 3.5542 1.4036 36 1 4.1222 3.0409 2.1481 37 1 5.2542 5.0345 1.3306 38 1 3.8230 5.5118 0.3861 39 1 3.7665 5.5437 2.1648 40 1 5.6812 4.5548 -1.2512 41 1 7.9997 2.9794 0.8669 42 1 10.4263 2.8375 0.4965 43 1 11.3945 3.5384 -1.6481 44 1 12.8599 5.4523 -4.9991 45 1 7.4527 4.5220 -3.0812 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313458656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:22 Heat of formation + Delta-G solvation = -68.757284 kcal Electronic energy + Delta-G solvation = -22662.050564 eV Core-core repulsion = 19449.057637 eV Total energy + Delta-G solvation = -3212.992927 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.55220 -39.45242 -37.48241 -36.11189 -35.22059 -34.81326 -32.20169 -31.44214 -30.60154 -27.75494 -27.01795 -24.35694 -23.80740 -22.87262 -22.51887 -21.63562 -20.68296 -19.51959 -18.29406 -17.84385 -17.11755 -16.70664 -16.33847 -16.12944 -15.63464 -15.48655 -14.95161 -14.70011 -14.52902 -14.44812 -14.26733 -14.13132 -13.84129 -13.49686 -13.45209 -12.98549 -12.88928 -12.61722 -12.52673 -12.40315 -12.19332 -12.04304 -11.92938 -11.82820 -11.66962 -11.58869 -11.48574 -11.26569 -11.14883 -10.93335 -10.45401 -9.57757 -8.90658 -8.89829 -6.54445 0.63966 0.76546 1.26768 1.40498 1.48253 1.69200 2.11992 2.19482 2.61928 3.45955 3.62416 3.72312 3.88297 4.16448 4.21167 4.24824 4.30538 4.40758 4.48666 4.50005 4.60132 4.62540 4.67123 4.82088 4.84022 4.88469 4.91543 4.96428 5.00740 5.05766 5.10912 5.15062 5.21603 5.25019 5.33530 5.38823 5.39706 5.48050 5.54583 5.58446 5.69968 5.80027 5.91537 6.19521 6.33779 6.61887 6.68768 6.80565 7.26157 8.18237 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028395 B = 0.003177 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.840190 B = 8810.918488 C = 9090.526929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.111 4.111 4 C -0.101 4.101 5 C -0.095 4.095 6 H 0.116 0.884 7 C -0.106 4.106 8 C -0.162 4.162 9 C 0.512 3.488 10 O -0.565 6.565 11 N -0.661 5.661 12 C 0.173 3.827 13 C -0.231 4.231 14 C -0.072 4.072 15 C -0.266 4.266 16 C 0.088 3.912 17 C -0.478 4.478 18 H 0.060 0.940 19 C 0.047 3.953 20 N -0.851 5.851 21 Si 0.971 3.029 22 H -0.261 1.261 23 H -0.280 1.280 24 H -0.253 1.253 25 C -0.238 4.238 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.106 0.894 36 H 0.054 0.946 37 H 0.031 0.969 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.419 0.581 41 H 0.116 0.884 42 H 0.124 0.876 43 H 0.102 0.898 44 H 0.294 0.706 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.237 -1.729 11.223 23.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.148 4.148 4 C -0.139 4.139 5 C -0.116 4.116 6 H 0.134 0.866 7 C -0.144 4.144 8 C -0.220 4.220 9 C 0.301 3.699 10 O -0.442 6.442 11 N -0.307 5.307 12 C 0.080 3.920 13 C -0.252 4.252 14 C -0.091 4.091 15 C -0.285 4.285 16 C 0.085 3.915 17 C -0.508 4.508 18 H 0.078 0.922 19 C -0.168 4.168 20 N -0.477 5.477 21 Si 0.796 3.204 22 H -0.187 1.187 23 H -0.207 1.207 24 H -0.177 1.177 25 C -0.260 4.260 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.124 0.876 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.257 0.743 41 H 0.134 0.866 42 H 0.142 0.858 43 H 0.119 0.881 44 H 0.104 0.896 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -19.652 -2.272 11.406 22.835 hybrid contribution 0.864 0.343 -0.292 0.974 sum -18.788 -1.929 11.114 21.915 Atomic orbital electron populations 1.21757 0.94885 1.01860 1.02240 1.21549 0.96610 0.96871 1.01666 1.21630 0.92610 0.97224 1.03372 1.21431 0.97008 0.93531 1.01960 1.21485 0.87942 0.99840 1.02328 0.86629 1.21540 1.03148 0.95365 0.94356 1.21918 1.00215 0.96263 1.03556 1.21611 0.91948 0.79452 0.76845 1.90665 1.68053 1.39356 1.46174 1.43625 1.06155 1.28622 1.52262 1.17587 0.83019 0.98319 0.93121 1.20750 0.92843 1.12078 0.99487 1.20834 0.94930 0.97108 0.96199 1.21226 0.98856 1.11544 0.96871 1.17665 0.92302 0.89409 0.92172 1.19437 0.98361 1.38999 0.93982 0.92191 1.26804 0.97023 0.92378 1.00573 1.69686 1.14131 1.35431 1.28470 0.85455 0.78216 0.78070 0.78616 1.18735 1.20658 1.17707 1.20868 0.95266 1.13738 0.96137 0.92134 0.92365 0.92721 0.92770 0.92471 0.90780 0.90205 0.92358 0.93226 0.87593 0.92743 0.95017 0.90750 0.90987 0.74290 0.86562 0.85807 0.88063 0.89550 0.86800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 71.98 0.71 -0.97 16 2 C -0.13 -1.82 5.93 30.59 0.18 -1.63 16 3 C -0.11 -1.49 4.97 30.59 0.15 -1.34 16 4 C -0.10 -2.01 4.30 30.59 0.13 -1.88 16 5 C -0.09 -1.87 2.23 -11.54 -0.03 -1.89 16 6 H 0.12 1.67 8.11 -2.38 -0.02 1.65 16 7 C -0.11 -1.73 5.22 30.59 0.16 -1.57 16 8 C -0.16 -2.64 9.50 71.98 0.68 -1.96 16 9 C 0.51 15.72 5.62 87.66 0.49 16.21 16 10 O -0.56 -22.35 13.86 -3.06 -0.04 -22.39 16 11 N -0.66 -20.96 5.10 -303.66 -1.55 -22.51 16 12 C 0.17 7.26 6.28 38.10 0.24 7.50 16 13 C -0.23 -10.19 8.71 22.58 0.20 -9.99 16 14 C -0.07 -3.23 10.02 22.20 0.22 -3.01 16 15 C -0.27 -13.13 7.10 22.75 0.16 -12.97 16 16 C 0.09 4.57 5.19 -21.31 -0.11 4.46 16 17 C -0.48 -26.98 9.61 23.46 0.23 -26.76 16 18 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 19 C 0.05 2.52 5.46 85.25 0.47 2.98 16 20 N -0.85 -46.94 13.93 21.82 0.30 -46.63 16 21 Si 0.97 43.80 24.38 68.60 1.67 45.47 16 22 H -0.26 -11.29 6.49 99.48 0.65 -10.65 16 23 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.25 -11.62 6.81 99.48 0.68 -10.94 16 25 C -0.24 -11.02 9.71 22.85 0.22 -10.80 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 0.86 6.55 -2.39 -0.02 0.85 16 33 H 0.06 1.35 8.02 -2.39 -0.02 1.33 16 34 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.11 1.12 6.52 -2.39 -0.02 1.11 16 36 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.03 0.69 7.37 -2.39 -0.02 0.67 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.42 10.15 8.80 -92.71 -0.82 9.34 16 41 H 0.12 5.08 6.21 -2.91 -0.02 5.06 16 42 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 43 H 0.10 4.96 4.05 -2.91 -0.01 4.95 16 44 H 0.29 14.58 8.30 -92.71 -0.77 13.82 16 45 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -66.56 356.95 4.56 -62.00 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.06 Total: 27.66 kcal Atomic # 6 Polarization: -47.72 SS G_CDS: 4.11 Total: -43.61 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -1.25 Total: -69.14 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.04 Total: -22.39 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.67 Total: 45.47 kcal Total: -66.56 4.56 -62.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313458656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.756 kcal (2) G-P(sol) polarization free energy of solvation -66.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds