Wall clock time and date at job start Tue Mar 31 2020 06:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.46810 * 2 1 4 4 C 1.52996 * 109.46893 * 184.32655 * 3 2 1 5 5 C 1.53002 * 109.47355 * 187.15720 * 4 3 2 6 6 C 1.53000 * 109.46446 * 65.52097 * 5 4 3 7 7 C 1.53005 * 109.46852 * 175.55301 * 6 5 4 8 8 C 1.50704 * 109.47197 * 67.16228 * 4 3 2 9 9 O 1.21292 * 119.99818 * 359.97438 * 8 4 3 10 10 N 1.34769 * 120.00537 * 179.97438 * 8 4 3 11 11 C 1.39940 * 120.00486 * 184.42083 * 10 8 4 12 12 C 1.39294 * 119.94799 * 143.57636 * 11 10 8 13 13 C 1.38482 * 120.42912 * 179.97438 * 12 11 10 14 14 C 1.37688 * 120.32193 * 359.97438 * 13 12 11 15 15 C 1.40743 * 119.88142 * 0.02562 * 14 13 12 16 16 C 1.41414 * 120.20437 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99859 * 210.11192 * 16 15 14 18 18 C 1.39924 * 120.00095 * 30.12212 * 16 15 14 19 19 N 1.30833 * 120.00449 * 9.28302 * 18 16 15 20 20 Si 1.86799 * 120.00041 * 189.29139 * 18 16 15 21 21 H 1.48495 * 109.47068 * 59.99678 * 20 18 16 22 22 H 1.48501 * 109.47225 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47023 * 299.99340 * 20 18 16 24 24 C 1.38238 * 119.94350 * 323.31042 * 11 10 8 25 25 H 1.08998 * 109.47020 * 300.00074 * 1 2 3 26 26 H 1.09000 * 109.47040 * 60.00230 * 1 2 3 27 27 H 1.08996 * 109.46663 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47020 * 239.99926 * 2 1 3 29 29 H 1.09000 * 109.47040 * 119.99769 * 2 1 3 30 30 H 1.08993 * 109.47300 * 64.33004 * 3 2 1 31 31 H 1.08994 * 109.46998 * 304.32897 * 3 2 1 32 32 H 1.08999 * 109.47842 * 307.16358 * 4 3 2 33 33 H 1.09002 * 109.47231 * 185.52078 * 5 4 3 34 34 H 1.09002 * 109.47114 * 305.52262 * 5 4 3 35 35 H 1.09002 * 109.47216 * 295.55193 * 6 5 4 36 36 H 1.09002 * 109.47151 * 55.55935 * 6 5 4 37 37 H 1.08998 * 109.47318 * 179.97438 * 7 6 5 38 38 H 1.08999 * 109.47236 * 300.00467 * 7 6 5 39 39 H 1.09002 * 109.46724 * 60.00373 * 7 6 5 40 40 H 0.97011 * 119.99850 * 4.41895 * 10 8 4 41 41 H 1.08005 * 119.78397 * 359.97438 * 12 11 10 42 42 H 1.07998 * 119.83824 * 180.02562 * 13 12 11 43 43 H 1.07995 * 120.05887 * 179.97438 * 14 13 12 44 44 H 0.96995 * 120.00439 * 179.97438 * 19 18 16 45 45 H 1.07994 * 120.16493 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5661 1.4440 -0.1088 5 6 4.0889 2.8707 0.0701 6 6 3.7955 3.3464 1.4944 7 6 4.4151 4.7289 1.7081 8 6 3.9736 0.9260 -1.4641 9 8 3.1266 0.5886 -2.2641 10 7 5.2789 0.8379 -1.7874 11 6 5.6556 0.4452 -3.0767 12 6 6.7723 1.0191 -3.6800 13 6 7.1543 0.6376 -4.9552 14 6 6.4340 -0.3146 -5.6410 15 6 5.3034 -0.9031 -5.0441 16 6 4.5583 -1.8813 -5.7425 17 1 3.4985 -1.9838 -5.5616 18 6 5.1941 -2.7165 -6.6677 19 7 6.4993 -2.7202 -6.7569 20 14 4.1792 -3.8262 -7.7759 21 1 3.2692 -2.9975 -8.6067 22 1 5.0840 -4.6046 -8.6595 23 1 3.3777 -4.7583 -6.9429 24 6 4.9221 -0.5156 -3.7473 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7414 1.9335 0.9262 31 1 1.6147 1.9782 -0.8486 32 1 3.9863 0.8031 0.6663 33 1 5.1647 2.8880 -0.1044 34 1 3.5945 3.5309 -0.6426 35 1 2.7172 3.4045 1.6431 36 1 4.2234 2.6423 2.2080 37 1 4.2056 5.0681 2.7226 38 1 5.4933 4.6708 1.5593 39 1 3.9871 5.4330 0.9945 40 1 5.9575 1.0466 -1.1263 41 1 7.3439 1.7665 -3.1497 42 1 8.0220 1.0885 -5.4137 43 1 6.7355 -0.6086 -6.6354 44 1 6.9401 -3.2994 -7.3980 45 1 4.0590 -0.9646 -3.2786 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313459549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:33 Heat of formation + Delta-G solvation = -53.481122 kcal Electronic energy + Delta-G solvation = -22937.004054 eV Core-core repulsion = 19724.673551 eV Total energy + Delta-G solvation = -3212.330503 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.03130 -37.54393 -36.13184 -34.59705 -33.84794 -32.93352 -30.88576 -29.76894 -28.05373 -26.33866 -25.25707 -24.04630 -21.63829 -21.38468 -20.87361 -20.46289 -19.28699 -17.64617 -16.85609 -15.60967 -15.41107 -15.05504 -14.90540 -14.69156 -14.54173 -13.83120 -13.68947 -13.47057 -13.04093 -12.90424 -12.72313 -12.58902 -12.20065 -12.04533 -11.84271 -11.60537 -11.36393 -11.18299 -11.14698 -11.07784 -11.01673 -10.86902 -10.67068 -10.54112 -10.42315 -10.38604 -10.04010 -9.59502 -9.26866 -9.00382 -8.80288 -7.37427 -6.89155 -6.61023 -4.31689 2.66844 2.89364 3.11719 3.16093 3.22452 3.36116 3.72166 4.01498 4.61561 4.66839 4.73871 4.80959 4.98010 5.10156 5.21872 5.30339 5.36958 5.48963 5.54386 5.59227 5.69335 5.73277 5.76770 5.87171 5.88934 5.98618 6.04416 6.08449 6.18488 6.25069 6.27150 6.40762 6.44994 6.57774 6.83973 7.06419 7.10087 7.12740 7.31343 7.61260 7.77583 8.00184 8.14990 8.22439 8.31408 8.69409 8.80500 8.99477 9.02489 10.31697 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017803 B = 0.004023 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.420187 B = 6957.569587 C = 8364.817978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C -0.098 4.098 4 C -0.107 4.107 5 C -0.112 4.112 6 C -0.123 4.123 7 C -0.153 4.153 8 C 0.507 3.493 9 O -0.513 6.513 10 N -0.669 5.669 11 C 0.145 3.855 12 C -0.255 4.255 13 C -0.097 4.097 14 C -0.164 4.164 15 C 0.118 3.882 16 C -0.461 4.461 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.807 5.807 20 Si 0.911 3.089 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.203 4.203 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.082 0.918 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.396 0.604 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.120 0.880 44 H 0.278 0.722 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.687 8.427 14.225 16.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.170 4.170 3 C -0.136 4.136 4 C -0.129 4.129 5 C -0.150 4.150 6 C -0.161 4.161 7 C -0.211 4.211 8 C 0.293 3.707 9 O -0.388 6.388 10 N -0.313 5.313 11 C 0.053 3.947 12 C -0.277 4.277 13 C -0.116 4.116 14 C -0.184 4.184 15 C 0.115 3.885 16 C -0.491 4.491 17 H 0.095 0.905 18 C -0.142 4.142 19 N -0.433 5.433 20 Si 0.736 3.264 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.224 4.224 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.230 0.770 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.138 0.862 44 H 0.089 0.911 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.142 8.076 13.538 16.299 hybrid contribution 0.159 -0.453 -0.146 0.502 sum -3.983 7.623 13.392 15.916 Atomic orbital electron populations 1.21707 0.96172 1.01286 1.01245 1.21654 0.95784 0.96811 1.02717 1.21460 0.92290 0.97815 1.01997 1.21439 0.98409 0.97749 0.95281 1.21608 1.01292 0.94540 0.97532 1.21584 1.01231 0.96939 0.96339 1.21781 1.00966 0.97007 1.01317 1.20612 0.82476 0.78400 0.89177 1.90716 1.50094 1.47073 1.50904 1.43487 1.07235 1.67608 1.12953 1.17474 0.96882 0.96259 0.84050 1.20092 1.02206 1.07312 0.98051 1.20486 0.98638 0.98231 0.94236 1.21394 0.98713 0.97671 1.00601 1.17527 0.91302 0.90045 0.89634 1.19526 0.96400 1.14413 1.18786 0.90549 1.25861 0.94981 0.97173 0.96232 1.69784 1.09036 1.33643 1.30856 0.86324 0.80215 0.79909 0.79963 1.18931 1.20433 1.19093 1.21158 1.03672 1.01420 0.96134 0.93458 0.92667 0.93067 0.89948 0.92946 0.91604 0.91095 0.88882 0.91434 0.91256 0.91582 0.91886 0.92860 0.92681 0.92716 0.76987 0.89367 0.89077 0.86222 0.91066 0.87210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 37.16 0.37 -1.33 16 2 C -0.13 -1.72 5.73 -26.73 -0.15 -1.87 16 3 C -0.10 -1.18 4.23 -26.73 -0.11 -1.29 16 4 C -0.11 -1.30 2.17 -91.77 -0.20 -1.50 16 5 C -0.11 -1.14 4.63 -26.73 -0.12 -1.26 16 6 C -0.12 -1.00 5.60 -26.73 -0.15 -1.15 16 7 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 8 C 0.51 8.81 6.67 -10.99 -0.07 8.73 16 9 O -0.51 -11.11 11.66 5.55 0.06 -11.05 16 10 N -0.67 -11.88 5.14 -9.91 -0.05 -11.93 16 11 C 0.14 3.30 6.26 -83.76 -0.52 2.78 16 12 C -0.26 -5.66 9.97 -39.10 -0.39 -6.05 16 13 C -0.10 -2.29 10.02 -39.69 -0.40 -2.69 16 14 C -0.16 -4.36 8.65 -38.84 -0.34 -4.70 16 15 C 0.12 3.28 5.54 -106.85 -0.59 2.69 16 16 C -0.46 -12.86 9.06 -37.74 -0.34 -13.20 16 17 H 0.08 2.10 7.86 -52.49 -0.41 1.69 16 18 C 0.07 1.91 5.27 -17.35 -0.09 1.82 16 19 N -0.81 -21.43 10.86 55.55 0.60 -20.83 16 20 Si 0.91 19.54 29.57 -169.99 -5.03 14.51 16 21 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 C -0.20 -5.30 8.42 -38.69 -0.33 -5.63 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 1.36 6.09 -51.93 -0.32 1.04 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.64 6.37 -51.93 -0.33 0.31 16 31 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.66 7.51 -51.93 -0.39 0.27 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.52 6.65 -51.93 -0.35 0.17 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.40 5.54 8.32 -40.82 -0.34 5.20 16 41 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 42 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 43 H 0.12 3.27 6.27 -52.49 -0.33 2.95 16 44 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 45 H 0.11 2.96 6.34 -52.49 -0.33 2.63 16 LS Contribution 359.71 15.07 5.42 5.42 Total: -1.00 -30.22 359.71 -9.48 -39.70 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -7.41 Total: 9.61 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: -3.07 Total: -25.43 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: 0.55 Total: -32.76 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.06 Total: -11.05 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.51 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.22 -9.48 -39.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313459549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.784 kcal (2) G-P(sol) polarization free energy of solvation -30.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds