Wall clock time and date at job start Tue Mar 31 2020 05:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 110.05615 * 2 1 4 4 O 1.42901 * 109.47369 * 62.94579 * 3 2 1 5 5 C 1.54266 * 110.03003 * 121.41172 * 2 1 3 6 6 C 1.54892 * 104.19506 * 95.68115 * 5 2 1 7 7 C 1.54889 * 102.75036 * 37.94055 * 6 5 2 8 8 C 1.53871 * 110.03471 * 238.57981 * 2 1 3 9 9 H 1.08998 * 110.07460 * 0.02562 * 8 2 1 10 10 N 1.46904 * 110.03181 * 121.43335 * 8 2 1 11 11 C 1.46892 * 111.00106 * 193.06337 * 10 8 2 12 12 C 1.50698 * 109.47352 * 180.02562 * 11 10 8 13 13 C 1.38634 * 119.75297 * 89.99608 * 12 11 10 14 14 C 1.37613 * 120.24939 * 180.02562 * 13 12 11 15 15 C 1.40716 * 119.74820 * 0.02562 * 14 13 12 16 16 C 1.41388 * 120.24930 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00649 * 152.63682 * 16 15 14 18 18 C 1.39946 * 119.99894 * 332.35964 * 16 15 14 19 19 N 1.30829 * 120.00095 * 349.15186 * 18 16 15 20 20 Si 1.86801 * 120.00272 * 169.14820 * 18 16 15 21 21 H 1.48500 * 109.47119 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47370 * 120.00358 * 20 18 16 23 23 H 1.48503 * 109.47107 * 240.00228 * 20 18 16 24 24 C 1.40723 * 119.50727 * 0.27052 * 15 14 13 25 25 C 1.37620 * 119.74501 * 359.47128 * 24 15 14 26 26 H 1.09007 * 109.46578 * 181.41644 * 1 2 3 27 27 H 1.08995 * 109.47237 * 301.41621 * 1 2 3 28 28 H 1.09004 * 109.46609 * 61.42458 * 1 2 3 29 29 H 1.08994 * 109.47763 * 182.95061 * 3 2 1 30 30 H 1.09003 * 109.47151 * 302.95240 * 3 2 1 31 31 H 0.96703 * 114.00584 * 179.97438 * 4 3 2 32 32 H 1.09002 * 110.49226 * 337.00056 * 5 2 1 33 33 H 1.09009 * 110.59973 * 214.41046 * 5 2 1 34 34 H 1.09000 * 110.75286 * 279.62286 * 6 5 2 35 35 H 1.08998 * 110.91346 * 156.33436 * 6 5 2 36 36 H 1.08995 * 110.48300 * 203.38121 * 7 6 5 37 37 H 1.08994 * 110.59519 * 80.79214 * 7 6 5 38 38 H 1.00900 * 110.99417 * 317.01593 * 10 8 2 39 39 H 1.08997 * 109.47722 * 59.99538 * 11 10 8 40 40 H 1.09003 * 109.46898 * 299.99605 * 11 10 8 41 41 H 1.08000 * 119.87591 * 0.02562 * 13 12 11 42 42 H 1.08000 * 120.12861 * 180.02562 * 14 13 12 43 43 H 0.96992 * 120.00107 * 179.97438 * 19 18 16 44 44 H 1.07996 * 120.12315 * 179.70546 * 24 15 14 45 45 H 1.07990 * 119.87348 * 180.22802 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 8 1.6424 2.0948 1.1998 5 6 2.0584 -0.7554 1.2369 6 6 2.3281 -2.1901 0.7193 7 6 2.8876 -1.9406 -0.7033 8 6 2.0571 -0.7536 -1.2336 9 1 1.2235 -1.1193 -1.8331 10 7 2.9058 0.1334 -2.0405 11 6 3.1672 -0.4485 -3.3637 12 6 4.0391 0.4872 -4.1607 13 6 5.4187 0.3692 -4.0908 14 6 6.2246 1.2186 -4.8138 15 6 5.6435 2.2100 -5.6258 16 6 6.4615 3.0880 -6.3736 17 1 6.0896 3.5252 -7.2884 18 6 7.7512 3.3950 -5.9252 19 7 8.1251 3.0473 -4.7207 20 14 8.9388 4.3013 -7.0467 21 1 8.2779 4.5784 -8.3473 22 1 9.3396 5.5824 -6.4116 23 1 10.1435 3.4629 -7.2729 24 6 4.2422 2.3246 -5.6842 25 6 3.4556 1.4608 -4.9567 26 1 -0.3633 -1.0274 0.0254 27 1 -0.3633 0.5356 0.8770 28 1 -0.3633 0.4916 -0.9025 29 1 3.1433 1.4266 -0.0529 30 1 1.6542 1.9702 -0.8624 31 1 1.9407 3.0122 1.2681 32 1 1.3061 -0.7695 2.0256 33 1 2.9807 -0.3008 1.5989 34 1 1.4032 -2.7651 0.6753 35 1 3.0664 -2.6959 1.3416 36 1 2.7403 -2.8197 -1.3307 37 1 3.9443 -1.6774 -0.6590 38 1 2.4936 1.0506 -2.1239 39 1 2.2231 -0.6001 -3.8870 40 1 3.6750 -1.4057 -3.2457 41 1 5.8625 -0.3922 -3.4665 42 1 7.2991 1.1246 -4.7582 43 1 9.0190 3.2598 -4.4101 44 1 3.7857 3.0849 -6.3004 45 1 2.3799 1.5445 -5.0028 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331167013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:42 Heat of formation + Delta-G solvation = -47.250345 kcal Electronic energy + Delta-G solvation = -23070.873342 eV Core-core repulsion = 19858.813025 eV Total energy + Delta-G solvation = -3212.060316 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.72607 -37.64981 -36.16643 -34.63031 -33.24345 -31.49474 -30.17157 -29.25068 -27.43829 -26.84307 -25.39015 -23.86750 -22.91334 -20.94987 -20.55093 -19.73654 -18.41957 -17.35609 -17.28009 -15.85585 -15.37975 -15.21567 -15.08724 -14.43937 -14.17912 -13.83106 -13.76624 -13.40249 -13.38877 -12.74207 -12.52696 -12.40909 -12.15803 -11.96101 -11.72887 -11.65924 -11.27474 -11.05776 -10.99506 -10.93357 -10.85109 -10.58703 -10.55411 -10.37098 -10.34745 -10.26385 -9.84222 -9.58164 -9.33142 -9.18879 -8.03890 -7.43878 -7.25368 -6.69217 -4.36360 2.74157 3.06824 3.08675 3.13201 3.16544 3.94637 4.15018 4.43345 4.57552 4.64402 4.84331 5.03268 5.27488 5.32039 5.36747 5.45189 5.53154 5.62956 5.68587 5.74599 5.80148 5.86937 5.90287 5.91077 6.02106 6.04452 6.11892 6.13886 6.24710 6.29301 6.34676 6.39225 6.46139 6.47067 6.96382 7.09410 7.30401 7.37553 7.45493 7.62836 7.68351 7.70805 7.89529 8.07723 8.15383 8.31891 8.66976 8.91628 8.98801 10.23754 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024508 B = 0.003320 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.192627 B = 8432.525459 C = 8607.410515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.060 4.060 3 C 0.087 3.913 4 O -0.577 6.577 5 C -0.100 4.100 6 C -0.126 4.126 7 C -0.114 4.114 8 C 0.090 3.910 9 H 0.041 0.959 10 N -0.679 5.679 11 C 0.123 3.877 12 C -0.208 4.208 13 C -0.082 4.082 14 C -0.161 4.161 15 C 0.110 3.890 16 C -0.463 4.463 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.800 5.800 20 Si 0.909 3.091 21 H -0.262 1.262 22 H -0.275 1.275 23 H -0.273 1.273 24 C -0.223 4.223 25 C -0.090 4.090 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.040 0.960 31 H 0.377 0.623 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.339 0.661 39 H 0.017 0.983 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.121 0.879 43 H 0.278 0.722 44 H 0.090 0.910 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.498 -5.699 9.100 14.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.061 4.061 3 C 0.010 3.990 4 O -0.382 6.382 5 C -0.137 4.137 6 C -0.164 4.164 7 C -0.153 4.153 8 C -0.020 4.020 9 H 0.059 0.941 10 N -0.313 5.313 11 C -0.004 4.004 12 C -0.209 4.209 13 C -0.101 4.101 14 C -0.181 4.181 15 C 0.108 3.892 16 C -0.494 4.494 17 H 0.094 0.906 18 C -0.143 4.143 19 N -0.426 5.426 20 Si 0.734 3.266 21 H -0.185 1.185 22 H -0.200 1.200 23 H -0.198 1.198 24 C -0.243 4.243 25 C -0.109 4.109 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.223 0.777 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.160 0.840 39 H 0.035 0.965 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.139 0.861 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.995 -6.493 9.626 14.687 hybrid contribution -0.015 1.210 -1.072 1.617 sum -9.010 -5.282 8.554 13.500 Atomic orbital electron populations 1.21856 0.94251 1.01306 1.01885 1.21239 0.95451 0.93900 0.95495 1.22236 0.99317 0.91847 0.85647 1.86399 1.79867 1.29882 1.42063 1.22264 1.00937 0.94392 0.96132 1.22490 1.00399 0.96926 0.96579 1.22427 1.00896 0.96594 0.95339 1.22226 0.93617 0.93333 0.92854 0.94112 1.60948 1.48889 1.05258 1.16162 1.20587 0.96249 0.96794 0.86814 1.18945 0.93526 1.02883 1.05589 1.20520 0.92692 0.98493 0.98356 1.21414 0.99629 0.95850 1.01164 1.17645 0.90960 0.90234 0.90384 1.19624 0.97583 1.24072 1.08077 0.90623 1.25890 0.98641 0.94986 0.94820 1.69806 1.19500 1.37698 1.15614 0.86244 0.80029 0.79282 0.81027 1.18537 1.20024 1.19801 1.20980 0.94183 1.02580 1.06570 1.20360 0.96620 0.96002 0.97912 0.92857 0.91857 0.93186 0.91471 0.94152 0.77685 0.91866 0.91310 0.92010 0.91668 0.92287 0.90143 0.84038 0.96494 0.91875 0.89463 0.86146 0.91064 0.89193 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.04 37.16 0.30 -1.20 16 2 C -0.06 -0.73 0.75 -153.39 -0.12 -0.84 16 3 C 0.09 1.10 4.53 37.16 0.17 1.27 16 4 O -0.58 -6.82 12.75 -35.23 -0.45 -7.27 16 5 C -0.10 -1.15 5.54 -25.07 -0.14 -1.29 16 6 C -0.13 -1.34 6.91 -24.74 -0.17 -1.51 16 7 C -0.11 -1.41 5.89 -25.07 -0.15 -1.56 16 8 C 0.09 1.17 2.86 -66.59 -0.19 0.98 16 9 H 0.04 0.54 7.54 -51.93 -0.39 0.15 16 10 N -0.68 -10.55 5.24 -106.81 -0.56 -11.11 16 11 C 0.12 2.13 5.62 -4.98 -0.03 2.10 16 12 C -0.21 -4.41 5.42 -104.33 -0.56 -4.97 16 13 C -0.08 -1.89 9.67 -39.66 -0.38 -2.28 16 14 C -0.16 -4.18 8.67 -38.87 -0.34 -4.51 16 15 C 0.11 2.93 5.56 -106.82 -0.59 2.34 16 16 C -0.46 -12.33 9.07 -37.74 -0.34 -12.67 16 17 H 0.08 1.94 7.87 -52.49 -0.41 1.53 16 18 C 0.07 1.84 5.26 -17.34 -0.09 1.75 16 19 N -0.80 -20.78 10.77 55.55 0.60 -20.18 16 20 Si 0.91 18.76 29.57 -169.99 -5.03 13.73 16 21 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 24 C -0.22 -5.45 9.80 -38.87 -0.38 -5.83 16 25 C -0.09 -1.97 9.67 -39.66 -0.38 -2.36 16 26 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 27 H 0.06 0.72 7.76 -51.93 -0.40 0.31 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.95 7.61 -51.93 -0.40 0.56 16 30 H 0.04 0.51 6.91 -51.93 -0.36 0.15 16 31 H 0.38 3.05 9.12 45.56 0.42 3.47 16 32 H 0.06 0.70 7.84 -51.93 -0.41 0.29 16 33 H 0.07 0.86 7.86 -51.92 -0.41 0.45 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 1.12 8.05 -51.93 -0.42 0.70 16 38 H 0.34 5.33 6.21 -39.29 -0.24 5.08 16 39 H 0.02 0.28 8.05 -51.93 -0.42 -0.14 16 40 H 0.06 1.07 7.62 -51.93 -0.40 0.67 16 41 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 42 H 0.12 3.25 6.13 -52.49 -0.32 2.93 16 43 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 44 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 45 H 0.08 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 354.66 15.07 5.34 5.34 Total: -1.00 -27.57 354.66 -10.17 -37.74 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -6.68 Total: 12.34 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: -3.40 Total: -30.59 kcal Atomic # 7 Polarization: -31.33 SS G_CDS: 0.04 Total: -31.29 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.45 Total: -7.27 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.57 -10.17 -37.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331167013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.511 kcal (2) G-P(sol) polarization free energy of solvation -27.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds