Wall clock time and date at job start Tue Mar 31 2020 05:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 110.05615 * 2 1 4 4 O 1.42901 * 109.47369 * 62.94579 * 3 2 1 5 5 C 1.54266 * 110.03003 * 121.41172 * 2 1 3 6 6 C 1.54892 * 104.19506 * 95.68115 * 5 2 1 7 7 C 1.54889 * 102.75036 * 37.94055 * 6 5 2 8 8 C 1.53871 * 110.03471 * 238.57981 * 2 1 3 9 9 H 1.08998 * 110.07460 * 0.02562 * 8 2 1 10 10 N 1.46904 * 110.03181 * 121.43335 * 8 2 1 11 11 C 1.46892 * 111.00106 * 193.06337 * 10 8 2 12 12 C 1.50698 * 109.47352 * 180.02562 * 11 10 8 13 13 C 1.38634 * 119.75297 * 89.99608 * 12 11 10 14 14 C 1.37613 * 120.24939 * 180.02562 * 13 12 11 15 15 C 1.40716 * 119.74820 * 0.02562 * 14 13 12 16 16 C 1.41388 * 120.24930 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00649 * 152.63682 * 16 15 14 18 18 C 1.39946 * 119.99894 * 332.35964 * 16 15 14 19 19 N 1.30829 * 120.00095 * 349.15186 * 18 16 15 20 20 Si 1.86801 * 120.00272 * 169.14820 * 18 16 15 21 21 H 1.48500 * 109.47119 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47370 * 120.00358 * 20 18 16 23 23 H 1.48503 * 109.47107 * 240.00228 * 20 18 16 24 24 C 1.40723 * 119.50727 * 0.27052 * 15 14 13 25 25 C 1.37620 * 119.74501 * 359.47128 * 24 15 14 26 26 H 1.09007 * 109.46578 * 181.41644 * 1 2 3 27 27 H 1.08995 * 109.47237 * 301.41621 * 1 2 3 28 28 H 1.09004 * 109.46609 * 61.42458 * 1 2 3 29 29 H 1.08994 * 109.47763 * 182.95061 * 3 2 1 30 30 H 1.09003 * 109.47151 * 302.95240 * 3 2 1 31 31 H 0.96703 * 114.00584 * 179.97438 * 4 3 2 32 32 H 1.09002 * 110.49226 * 337.00056 * 5 2 1 33 33 H 1.09009 * 110.59973 * 214.41046 * 5 2 1 34 34 H 1.09000 * 110.75286 * 279.62286 * 6 5 2 35 35 H 1.08998 * 110.91346 * 156.33436 * 6 5 2 36 36 H 1.08995 * 110.48300 * 203.38121 * 7 6 5 37 37 H 1.08994 * 110.59519 * 80.79214 * 7 6 5 38 38 H 1.00900 * 110.99417 * 317.01593 * 10 8 2 39 39 H 1.08997 * 109.47722 * 59.99538 * 11 10 8 40 40 H 1.09003 * 109.46898 * 299.99605 * 11 10 8 41 41 H 1.08000 * 119.87591 * 0.02562 * 13 12 11 42 42 H 1.08000 * 120.12861 * 180.02562 * 14 13 12 43 43 H 0.96992 * 120.00107 * 179.97438 * 19 18 16 44 44 H 1.07996 * 120.12315 * 179.70546 * 24 15 14 45 45 H 1.07990 * 119.87348 * 180.22802 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 8 1.6424 2.0948 1.1998 5 6 2.0584 -0.7554 1.2369 6 6 2.3281 -2.1901 0.7193 7 6 2.8876 -1.9406 -0.7033 8 6 2.0571 -0.7536 -1.2336 9 1 1.2235 -1.1193 -1.8331 10 7 2.9058 0.1334 -2.0405 11 6 3.1672 -0.4485 -3.3637 12 6 4.0391 0.4872 -4.1607 13 6 5.4187 0.3692 -4.0908 14 6 6.2246 1.2186 -4.8138 15 6 5.6435 2.2100 -5.6258 16 6 6.4615 3.0880 -6.3736 17 1 6.0896 3.5252 -7.2884 18 6 7.7512 3.3950 -5.9252 19 7 8.1251 3.0473 -4.7207 20 14 8.9388 4.3013 -7.0467 21 1 8.2779 4.5784 -8.3473 22 1 9.3396 5.5824 -6.4116 23 1 10.1435 3.4629 -7.2729 24 6 4.2422 2.3246 -5.6842 25 6 3.4556 1.4608 -4.9567 26 1 -0.3633 -1.0274 0.0254 27 1 -0.3633 0.5356 0.8770 28 1 -0.3633 0.4916 -0.9025 29 1 3.1433 1.4266 -0.0529 30 1 1.6542 1.9702 -0.8624 31 1 1.9407 3.0122 1.2681 32 1 1.3061 -0.7695 2.0256 33 1 2.9807 -0.3008 1.5989 34 1 1.4032 -2.7651 0.6753 35 1 3.0664 -2.6959 1.3416 36 1 2.7403 -2.8197 -1.3307 37 1 3.9443 -1.6774 -0.6590 38 1 2.4936 1.0506 -2.1239 39 1 2.2231 -0.6001 -3.8870 40 1 3.6750 -1.4057 -3.2457 41 1 5.8625 -0.3922 -3.4665 42 1 7.2991 1.1246 -4.7582 43 1 9.0190 3.2598 -4.4101 44 1 3.7857 3.0849 -6.3004 45 1 2.3799 1.5445 -5.0028 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331167013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:41 Heat of formation + Delta-G solvation = -63.085846 kcal Electronic energy + Delta-G solvation = -23071.560021 eV Core-core repulsion = 19858.813025 eV Total energy + Delta-G solvation = -3212.746995 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.75006 -39.42761 -37.17467 -36.14315 -34.85895 -32.42602 -31.86278 -31.11418 -28.84194 -27.86353 -26.79144 -25.03486 -24.28422 -22.82575 -21.86203 -21.15793 -19.43675 -19.20114 -18.34154 -17.17185 -16.93371 -16.35135 -16.26139 -15.73525 -15.59189 -15.34348 -15.12090 -14.93585 -14.38950 -14.25447 -13.84686 -13.72131 -13.51686 -13.27777 -13.16417 -13.04921 -12.76790 -12.63018 -12.44741 -12.28400 -11.94763 -11.87256 -11.74607 -11.55229 -11.45518 -11.33664 -11.28441 -11.16724 -11.03753 -10.81465 -9.33020 -9.31330 -9.07950 -8.56591 -6.34335 0.95887 1.16636 1.38163 1.49674 1.52916 2.21960 2.73015 3.19872 3.42923 3.62872 3.72856 3.85918 4.09234 4.30683 4.32145 4.36521 4.42275 4.44471 4.52365 4.56292 4.59815 4.65496 4.72063 4.78599 4.87862 4.90414 4.99100 5.08877 5.12223 5.14338 5.17797 5.20348 5.23606 5.36407 5.40447 5.42377 5.49028 5.54511 5.73892 5.96373 6.13174 6.20597 6.32375 6.41735 6.52433 6.74248 6.89658 6.97156 7.06302 8.38646 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024508 B = 0.003320 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.192627 B = 8432.525459 C = 8607.410515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.061 4.061 3 C 0.092 3.908 4 O -0.584 6.584 5 C -0.099 4.099 6 C -0.118 4.118 7 C -0.115 4.115 8 C 0.092 3.908 9 H 0.049 0.951 10 N -0.687 5.687 11 C 0.131 3.869 12 C -0.193 4.193 13 C -0.088 4.088 14 C -0.185 4.185 15 C 0.077 3.923 16 C -0.502 4.502 17 H 0.072 0.928 18 C 0.031 3.969 19 N -0.834 5.834 20 Si 0.984 3.016 21 H -0.259 1.259 22 H -0.267 1.267 23 H -0.265 1.265 24 C -0.238 4.238 25 C -0.089 4.089 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.039 0.961 31 H 0.392 0.608 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.338 0.662 39 H 0.033 0.967 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.285 0.715 44 H 0.095 0.905 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.986 -6.487 9.681 16.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.061 4.061 3 C 0.014 3.986 4 O -0.391 6.391 5 C -0.136 4.136 6 C -0.156 4.156 7 C -0.154 4.154 8 C -0.018 4.018 9 H 0.067 0.933 10 N -0.320 5.320 11 C 0.003 3.997 12 C -0.194 4.194 13 C -0.107 4.107 14 C -0.204 4.204 15 C 0.075 3.925 16 C -0.533 4.533 17 H 0.090 0.910 18 C -0.182 4.182 19 N -0.461 5.461 20 Si 0.805 3.195 21 H -0.183 1.183 22 H -0.191 1.191 23 H -0.190 1.190 24 C -0.258 4.258 25 C -0.108 4.108 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.241 0.759 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.158 0.842 39 H 0.051 0.949 40 H 0.087 0.913 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.096 0.904 44 H 0.113 0.887 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.499 -7.281 10.222 16.363 hybrid contribution 0.328 1.395 -1.145 1.835 sum -10.171 -5.886 9.077 14.849 Atomic orbital electron populations 1.21808 0.93124 1.02107 1.01742 1.21256 0.96271 0.93358 0.95229 1.22109 0.98024 0.92562 0.85945 1.86364 1.79887 1.31227 1.41652 1.22239 1.00402 0.94895 0.96088 1.22466 1.01270 0.96478 0.95360 1.22422 0.99647 0.96583 0.96705 1.22295 0.93513 0.93159 0.92840 0.93306 1.60858 1.50181 1.05662 1.15296 1.20480 0.96117 0.95812 0.87290 1.19369 0.93235 1.02357 1.04435 1.20736 0.93703 0.98263 0.97993 1.21354 0.99067 0.97194 1.02805 1.17975 0.92249 0.90924 0.91386 1.19860 0.99206 1.25543 1.08659 0.90966 1.26733 0.99816 0.95538 0.96095 1.69874 1.20252 1.38846 1.17115 0.85137 0.77500 0.78105 0.78798 1.18264 1.19136 1.18966 1.21194 0.93758 1.03526 1.07294 1.20687 0.98129 0.95142 0.96816 0.91566 0.92162 0.93180 0.93535 0.94252 0.75938 0.91198 0.92777 0.90407 0.90859 0.91376 0.92128 0.84155 0.94887 0.91274 0.88166 0.88181 0.90438 0.88696 0.86791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.04 71.98 0.58 -1.96 16 2 C -0.06 -1.34 0.75 -51.46 -0.04 -1.38 16 3 C 0.09 2.22 4.53 71.98 0.33 2.54 16 4 O -0.58 -13.05 12.75 -148.98 -1.90 -14.94 16 5 C -0.10 -2.08 5.54 31.67 0.18 -1.91 16 6 C -0.12 -2.19 6.91 31.89 0.22 -1.97 16 7 C -0.12 -2.59 5.89 31.67 0.19 -2.40 16 8 C 0.09 2.17 2.86 45.64 0.13 2.30 16 9 H 0.05 1.12 7.54 -2.39 -0.02 1.10 16 10 N -0.69 -20.07 5.24 -491.85 -2.58 -22.65 16 11 C 0.13 4.20 5.62 85.56 0.48 4.69 16 12 C -0.19 -7.93 5.42 -19.67 -0.11 -8.04 16 13 C -0.09 -4.11 9.67 22.22 0.21 -3.90 16 14 C -0.18 -9.91 8.67 22.73 0.20 -9.72 16 15 C 0.08 4.22 5.56 -21.29 -0.12 4.11 16 16 C -0.50 -27.74 9.07 23.46 0.21 -27.53 16 17 H 0.07 3.86 7.87 -2.91 -0.02 3.84 16 18 C 0.03 1.62 5.26 85.26 0.45 2.07 16 19 N -0.83 -44.77 10.77 21.83 0.24 -44.53 16 20 Si 0.98 39.13 29.57 68.60 2.03 41.16 16 21 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 22 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 23 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 24 C -0.24 -11.73 9.80 22.73 0.22 -11.51 16 25 C -0.09 -3.79 9.67 22.22 0.21 -3.58 16 26 H 0.07 1.11 8.14 -2.38 -0.02 1.10 16 27 H 0.06 1.22 7.76 -2.39 -0.02 1.20 16 28 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.05 1.31 7.61 -2.39 -0.02 1.29 16 30 H 0.04 0.95 6.91 -2.39 -0.02 0.93 16 31 H 0.39 5.91 9.12 -74.06 -0.68 5.23 16 32 H 0.07 1.39 7.84 -2.39 -0.02 1.37 16 33 H 0.05 1.29 7.86 -2.38 -0.02 1.28 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.06 1.61 8.05 -2.39 -0.02 1.59 16 38 H 0.34 10.03 6.21 -89.69 -0.56 9.48 16 39 H 0.03 0.97 8.05 -2.39 -0.02 0.96 16 40 H 0.07 2.16 7.62 -2.39 -0.02 2.14 16 41 H 0.10 4.32 8.06 -2.91 -0.02 4.29 16 42 H 0.10 5.69 6.13 -2.91 -0.02 5.68 16 43 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 44 H 0.09 4.44 8.06 -2.91 -0.02 4.42 16 45 H 0.11 4.09 8.06 -2.92 -0.02 4.06 16 Total: -1.00 -60.44 354.66 0.88 -59.56 By element: Atomic # 1 Polarization: 39.84 SS G_CDS: -0.25 Total: 39.59 kcal Atomic # 6 Polarization: -61.52 SS G_CDS: 3.35 Total: -58.18 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: -2.34 Total: -67.18 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -1.90 Total: -14.94 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -60.44 0.88 -59.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331167013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.529 kcal (2) G-P(sol) polarization free energy of solvation -60.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds