Wall clock time and date at job start Tue Mar 31 2020 05:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 110.01715 * 2 1 4 4 O 1.42900 * 109.47265 * 301.39451 * 3 2 1 5 5 C 1.54267 * 110.07010 * 238.58536 * 2 1 3 6 6 C 1.54889 * 104.19398 * 264.30245 * 5 2 1 7 7 C 1.54896 * 102.75020 * 322.05904 * 6 5 2 8 8 C 1.53875 * 110.03280 * 121.39497 * 2 1 3 9 9 H 1.09000 * 110.03338 * 359.97438 * 8 2 1 10 10 N 1.46904 * 110.02956 * 238.61841 * 8 2 1 11 11 C 1.46901 * 111.00167 * 154.99893 * 10 8 2 12 12 C 1.50699 * 109.47484 * 179.97438 * 11 10 8 13 13 C 1.38638 * 119.74365 * 89.99726 * 12 11 10 14 14 C 1.37618 * 120.24310 * 179.97438 * 13 12 11 15 15 C 1.40717 * 119.74660 * 0.02562 * 14 13 12 16 16 C 1.41393 * 120.24254 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00371 * 335.83853 * 16 15 14 18 18 C 1.39946 * 119.99926 * 156.11993 * 16 15 14 19 19 N 1.30821 * 119.99981 * 341.51380 * 18 16 15 20 20 Si 1.86800 * 120.00011 * 161.51291 * 18 16 15 21 21 H 1.48499 * 109.47331 * 59.99931 * 20 18 16 22 22 H 1.48502 * 109.47370 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47134 * 300.00211 * 20 18 16 24 24 C 1.40712 * 119.51122 * 0.24541 * 15 14 13 25 25 C 1.37616 * 119.74680 * 359.49028 * 24 15 14 26 26 H 1.09004 * 109.46801 * 298.60489 * 1 2 3 27 27 H 1.08995 * 109.47469 * 58.60873 * 1 2 3 28 28 H 1.08996 * 109.47255 * 178.61003 * 1 2 3 29 29 H 1.09002 * 109.46893 * 61.39542 * 3 2 1 30 30 H 1.08993 * 109.47150 * 181.38873 * 3 2 1 31 31 H 0.96701 * 113.99996 * 180.02562 * 4 3 2 32 32 H 1.08997 * 110.48688 * 22.97769 * 5 2 1 33 33 H 1.08994 * 110.48407 * 145.49616 * 5 2 1 34 34 H 1.08994 * 110.76068 * 80.36916 * 6 5 2 35 35 H 1.09000 * 110.75677 * 203.74915 * 6 5 2 36 36 H 1.08998 * 110.48448 * 279.26725 * 7 6 5 37 37 H 1.08996 * 110.48550 * 156.62238 * 7 6 5 38 38 H 1.00901 * 110.99694 * 278.94984 * 10 8 2 39 39 H 1.09008 * 109.46847 * 59.99681 * 11 10 8 40 40 H 1.09001 * 109.46917 * 300.00244 * 11 10 8 41 41 H 1.07990 * 119.88009 * 359.96524 * 13 12 11 42 42 H 1.08003 * 120.12891 * 180.02562 * 14 13 12 43 43 H 0.97008 * 120.00050 * 180.02562 * 19 18 16 44 44 H 1.08000 * 120.12693 * 179.75601 * 24 15 14 45 45 H 1.08004 * 119.88066 * 180.22747 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 8 1.5574 2.1254 -1.1500 5 6 2.0594 -0.7553 -1.2366 6 6 2.3298 -2.1897 -0.7186 7 6 2.8884 -1.9397 0.7043 8 6 2.0571 -0.7531 1.2340 9 1 1.2229 -1.1182 1.8331 10 7 2.9047 0.1347 2.0412 11 6 2.9353 -0.2991 3.4443 12 6 3.8130 0.6330 4.2393 13 6 3.2604 1.7546 4.8381 14 6 4.0523 2.6124 5.5669 15 6 5.4277 2.3476 5.7025 16 6 6.2511 3.2222 6.4484 17 1 5.9602 4.2534 6.5841 18 6 7.4459 2.7530 7.0058 19 7 7.6359 1.4678 7.1590 20 14 8.7695 3.9620 7.5312 21 1 8.2235 4.8739 8.5683 22 1 9.9280 3.2173 8.0865 23 1 9.2093 4.7560 6.3559 24 6 5.9785 1.2093 5.0855 25 6 5.1668 0.3624 4.3661 26 1 -0.3633 0.4920 0.9023 27 1 -0.3634 0.5353 -0.8772 28 1 -0.3633 -1.0273 -0.0249 29 1 1.7158 1.9474 0.9023 30 1 3.1433 1.4273 -0.0249 31 1 1.8503 3.0447 -1.2154 32 1 1.3074 -0.7700 -2.0254 33 1 2.9806 -0.2979 -1.5974 34 1 1.4052 -2.7653 -0.6748 35 1 3.0699 -2.6922 -1.3413 36 1 3.9448 -1.6749 0.6583 37 1 2.7415 -2.8187 1.3318 38 1 3.8370 0.1900 1.6594 39 1 3.3344 -1.3118 3.5029 40 1 1.9245 -0.2828 3.8518 41 1 2.2048 1.9561 4.7323 42 1 3.6198 3.4854 6.0330 43 1 8.4640 1.1426 7.5458 44 1 7.0336 0.9987 5.1798 45 1 5.5866 -0.5140 3.8947 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331167015.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:45 Heat of formation + Delta-G solvation = -51.187024 kcal Electronic energy + Delta-G solvation = -23009.300050 eV Core-core repulsion = 19797.069026 eV Total energy + Delta-G solvation = -3212.231023 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.67606 -37.64859 -36.15007 -34.61675 -33.27020 -31.38836 -30.21285 -29.25517 -27.50423 -26.68408 -25.37425 -23.76485 -22.76798 -21.05549 -20.76387 -19.89331 -18.45180 -17.29258 -17.19617 -15.78870 -15.56365 -15.23243 -14.54251 -14.43999 -14.23014 -13.89102 -13.76484 -13.38388 -13.20254 -12.74800 -12.50484 -12.34618 -12.27443 -11.96283 -11.93081 -11.56147 -11.36812 -11.19415 -11.02221 -11.00723 -10.79499 -10.72164 -10.59603 -10.48967 -10.31610 -10.21906 -9.66869 -9.55378 -9.39282 -9.12572 -8.01375 -7.44985 -7.30168 -6.77825 -4.35503 2.74649 3.05001 3.07399 3.08879 3.18895 3.91779 4.24780 4.42381 4.57405 4.62772 4.83163 5.01870 5.27783 5.32445 5.39040 5.44778 5.58194 5.61719 5.71050 5.79222 5.82145 5.87836 5.89131 5.93598 5.95256 6.06854 6.09754 6.21409 6.27075 6.31617 6.38177 6.39103 6.41911 6.43463 6.94279 7.06818 7.27375 7.37680 7.42832 7.61103 7.72012 7.79715 7.89652 8.05055 8.14435 8.30364 8.63515 8.89165 8.97727 10.16820 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026395 B = 0.003231 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.538915 B = 8663.577126 C = 8961.621355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.052 4.052 3 C 0.102 3.898 4 O -0.584 6.584 5 C -0.108 4.108 6 C -0.124 4.124 7 C -0.153 4.153 8 C 0.090 3.910 9 H 0.080 0.920 10 N -0.678 5.678 11 C 0.125 3.875 12 C -0.214 4.214 13 C -0.069 4.069 14 C -0.229 4.229 15 C 0.113 3.887 16 C -0.464 4.464 17 H 0.077 0.923 18 C 0.077 3.923 19 N -0.793 5.793 20 Si 0.907 3.093 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.264 1.264 24 C -0.167 4.167 25 C -0.095 4.095 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.374 0.626 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.340 0.660 39 H 0.019 0.981 40 H 0.060 0.940 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.281 0.719 44 H 0.116 0.884 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.640 -4.488 -12.300 15.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.053 4.053 3 C 0.025 3.975 4 O -0.389 6.389 5 C -0.146 4.146 6 C -0.162 4.162 7 C -0.192 4.192 8 C -0.021 4.021 9 H 0.098 0.902 10 N -0.308 5.308 11 C -0.003 4.003 12 C -0.216 4.216 13 C -0.087 4.087 14 C -0.249 4.249 15 C 0.111 3.889 16 C -0.494 4.494 17 H 0.095 0.905 18 C -0.141 4.141 19 N -0.418 5.418 20 Si 0.731 3.269 21 H -0.190 1.190 22 H -0.204 1.204 23 H -0.188 1.188 24 C -0.186 4.186 25 C -0.114 4.114 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.220 0.780 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.159 0.841 39 H 0.038 0.962 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.133 0.867 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.253 -4.785 -12.165 15.459 hybrid contribution 1.580 0.146 0.499 1.663 sum -6.673 -4.639 -11.666 14.218 Atomic orbital electron populations 1.21777 0.94128 1.00881 1.02067 1.21157 0.95830 0.94031 0.94284 1.22026 0.96745 0.91676 0.87054 1.86385 1.76511 1.28672 1.47360 1.22383 1.00869 0.94431 0.96885 1.22449 1.00482 0.97151 0.96086 1.23134 0.99945 0.99339 0.96817 1.22314 0.96109 0.90313 0.93361 0.90195 1.60836 1.16626 1.50804 1.02533 1.20572 0.98357 0.94721 0.86650 1.18891 0.93922 1.00068 1.08674 1.20323 0.97099 0.94292 0.97025 1.20970 0.94064 1.02007 1.07852 1.17608 0.90775 0.91600 0.88961 1.19576 1.03325 0.97732 1.28742 0.90519 1.25907 0.98895 0.95500 0.93784 1.69825 1.25284 1.14423 1.32274 0.86393 0.79754 0.81058 0.79668 1.18999 1.20359 1.18819 1.21263 0.99344 0.97517 1.00514 1.20513 0.93244 0.98094 0.99512 0.92769 0.92060 0.93290 0.92172 0.93812 0.77966 0.91714 0.91715 0.91707 0.91913 0.91432 0.91830 0.84058 0.96243 0.92157 0.89549 0.89180 0.90853 0.86655 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.00 37.16 0.30 -1.19 16 2 C -0.05 -0.62 0.75 -153.39 -0.12 -0.74 16 3 C 0.10 1.31 4.77 37.16 0.18 1.48 16 4 O -0.58 -6.99 12.68 -35.23 -0.45 -7.44 16 5 C -0.11 -1.19 5.66 -25.07 -0.14 -1.33 16 6 C -0.12 -1.24 6.91 -24.73 -0.17 -1.41 16 7 C -0.15 -1.72 6.46 -25.07 -0.16 -1.89 16 8 C 0.09 1.12 2.87 -66.59 -0.19 0.93 16 9 H 0.08 1.02 7.34 -51.93 -0.38 0.64 16 10 N -0.68 -9.98 4.43 -106.80 -0.47 -10.45 16 11 C 0.12 2.11 5.63 -4.98 -0.03 2.08 16 12 C -0.21 -4.50 5.41 -104.33 -0.56 -5.06 16 13 C -0.07 -1.52 9.67 -39.66 -0.38 -1.90 16 14 C -0.23 -5.62 9.80 -38.87 -0.38 -6.00 16 15 C 0.11 3.00 5.58 -106.83 -0.60 2.40 16 16 C -0.46 -12.31 9.05 -37.74 -0.34 -12.65 16 17 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 18 C 0.08 1.93 5.13 -17.34 -0.09 1.84 16 19 N -0.79 -20.42 10.98 55.55 0.61 -19.81 16 20 Si 0.91 18.57 29.60 -169.99 -5.03 13.54 16 21 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 24 C -0.17 -4.28 8.70 -38.87 -0.34 -4.62 16 25 C -0.09 -2.15 9.67 -39.66 -0.38 -2.53 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.72 7.64 -51.93 -0.40 0.32 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.86 7.81 -51.93 -0.41 0.45 16 30 H 0.04 0.58 7.48 -51.93 -0.39 0.19 16 31 H 0.37 3.10 9.12 45.56 0.42 3.51 16 32 H 0.06 0.70 7.84 -51.93 -0.41 0.29 16 33 H 0.06 0.74 7.83 -51.93 -0.41 0.34 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.80 7.56 -51.93 -0.39 0.41 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.34 5.15 7.66 -39.29 -0.30 4.85 16 39 H 0.02 0.32 8.08 -51.92 -0.42 -0.10 16 40 H 0.06 1.00 8.01 -51.93 -0.42 0.58 16 41 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.09 2.10 8.06 -52.48 -0.42 1.68 16 43 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 44 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 45 H 0.08 1.69 8.06 -52.48 -0.42 1.26 16 LS Contribution 356.67 15.07 5.37 5.37 Total: -1.00 -27.13 356.67 -10.13 -37.26 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -6.75 Total: 12.11 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: -3.41 Total: -30.59 kcal Atomic # 7 Polarization: -30.39 SS G_CDS: 0.14 Total: -30.25 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.45 Total: -7.44 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.13 -10.13 -37.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331167015.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.928 kcal (2) G-P(sol) polarization free energy of solvation -27.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds