Wall clock time and date at job start Tue Mar 31 2020 05:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 110.01715 * 2 1 4 4 O 1.42900 * 109.47265 * 301.39451 * 3 2 1 5 5 C 1.54267 * 110.07010 * 238.58536 * 2 1 3 6 6 C 1.54889 * 104.19398 * 264.30245 * 5 2 1 7 7 C 1.54896 * 102.75020 * 322.05904 * 6 5 2 8 8 C 1.53875 * 110.03280 * 121.39497 * 2 1 3 9 9 H 1.09000 * 110.03338 * 359.97438 * 8 2 1 10 10 N 1.46904 * 110.02956 * 238.61841 * 8 2 1 11 11 C 1.46901 * 111.00167 * 154.99893 * 10 8 2 12 12 C 1.50699 * 109.47484 * 179.97438 * 11 10 8 13 13 C 1.38638 * 119.74365 * 89.99726 * 12 11 10 14 14 C 1.37618 * 120.24310 * 179.97438 * 13 12 11 15 15 C 1.40717 * 119.74660 * 0.02562 * 14 13 12 16 16 C 1.41393 * 120.24254 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00371 * 335.83853 * 16 15 14 18 18 C 1.39946 * 119.99926 * 156.11993 * 16 15 14 19 19 N 1.30821 * 119.99981 * 341.51380 * 18 16 15 20 20 Si 1.86800 * 120.00011 * 161.51291 * 18 16 15 21 21 H 1.48499 * 109.47331 * 59.99931 * 20 18 16 22 22 H 1.48502 * 109.47370 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47134 * 300.00211 * 20 18 16 24 24 C 1.40712 * 119.51122 * 0.24541 * 15 14 13 25 25 C 1.37616 * 119.74680 * 359.49028 * 24 15 14 26 26 H 1.09004 * 109.46801 * 298.60489 * 1 2 3 27 27 H 1.08995 * 109.47469 * 58.60873 * 1 2 3 28 28 H 1.08996 * 109.47255 * 178.61003 * 1 2 3 29 29 H 1.09002 * 109.46893 * 61.39542 * 3 2 1 30 30 H 1.08993 * 109.47150 * 181.38873 * 3 2 1 31 31 H 0.96701 * 113.99996 * 180.02562 * 4 3 2 32 32 H 1.08997 * 110.48688 * 22.97769 * 5 2 1 33 33 H 1.08994 * 110.48407 * 145.49616 * 5 2 1 34 34 H 1.08994 * 110.76068 * 80.36916 * 6 5 2 35 35 H 1.09000 * 110.75677 * 203.74915 * 6 5 2 36 36 H 1.08998 * 110.48448 * 279.26725 * 7 6 5 37 37 H 1.08996 * 110.48550 * 156.62238 * 7 6 5 38 38 H 1.00901 * 110.99694 * 278.94984 * 10 8 2 39 39 H 1.09008 * 109.46847 * 59.99681 * 11 10 8 40 40 H 1.09001 * 109.46917 * 300.00244 * 11 10 8 41 41 H 1.07990 * 119.88009 * 359.96524 * 13 12 11 42 42 H 1.08003 * 120.12891 * 180.02562 * 14 13 12 43 43 H 0.97008 * 120.00050 * 180.02562 * 19 18 16 44 44 H 1.08000 * 120.12693 * 179.75601 * 24 15 14 45 45 H 1.08004 * 119.88066 * 180.22747 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 8 1.5574 2.1254 -1.1500 5 6 2.0594 -0.7553 -1.2366 6 6 2.3298 -2.1897 -0.7186 7 6 2.8884 -1.9397 0.7043 8 6 2.0571 -0.7531 1.2340 9 1 1.2229 -1.1182 1.8331 10 7 2.9047 0.1347 2.0412 11 6 2.9353 -0.2991 3.4443 12 6 3.8130 0.6330 4.2393 13 6 3.2604 1.7546 4.8381 14 6 4.0523 2.6124 5.5669 15 6 5.4277 2.3476 5.7025 16 6 6.2511 3.2222 6.4484 17 1 5.9602 4.2534 6.5841 18 6 7.4459 2.7530 7.0058 19 7 7.6359 1.4678 7.1590 20 14 8.7695 3.9620 7.5312 21 1 8.2235 4.8739 8.5683 22 1 9.9280 3.2173 8.0865 23 1 9.2093 4.7560 6.3559 24 6 5.9785 1.2093 5.0855 25 6 5.1668 0.3624 4.3661 26 1 -0.3633 0.4920 0.9023 27 1 -0.3634 0.5353 -0.8772 28 1 -0.3633 -1.0273 -0.0249 29 1 1.7158 1.9474 0.9023 30 1 3.1433 1.4273 -0.0249 31 1 1.8503 3.0447 -1.2154 32 1 1.3074 -0.7700 -2.0254 33 1 2.9806 -0.2979 -1.5974 34 1 1.4052 -2.7653 -0.6748 35 1 3.0699 -2.6922 -1.3413 36 1 3.9448 -1.6749 0.6583 37 1 2.7415 -2.8187 1.3318 38 1 3.8370 0.1900 1.6594 39 1 3.3344 -1.3118 3.5029 40 1 1.9245 -0.2828 3.8518 41 1 2.2048 1.9561 4.7323 42 1 3.6198 3.4854 6.0330 43 1 8.4640 1.1426 7.5458 44 1 7.0336 0.9987 5.1798 45 1 5.5866 -0.5140 3.8947 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331167015.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:44 Heat of formation + Delta-G solvation = -66.293553 kcal Electronic energy + Delta-G solvation = -23009.955118 eV Core-core repulsion = 19797.069026 eV Total energy + Delta-G solvation = -3212.886092 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.67328 -39.41471 -37.16918 -36.11756 -34.84847 -32.27573 -31.89219 -31.11363 -28.88113 -27.70305 -26.76822 -24.93624 -24.11906 -22.87148 -21.70675 -21.62546 -19.45724 -19.19842 -18.18765 -17.22336 -16.74848 -16.51238 -15.93030 -15.71241 -15.58244 -15.30948 -15.19075 -14.61964 -14.30167 -14.20285 -13.89742 -13.78597 -13.43269 -13.30669 -13.16842 -12.98769 -12.84639 -12.73848 -12.48557 -12.31836 -12.08014 -11.88445 -11.75433 -11.62684 -11.44197 -11.29963 -11.22604 -11.14588 -10.98370 -10.65749 -9.37823 -9.23975 -9.07828 -8.63639 -6.31981 0.96896 1.18004 1.37426 1.48263 1.53464 2.20618 2.70156 3.28388 3.47131 3.67407 3.76650 3.88976 4.10555 4.29709 4.34544 4.38762 4.43591 4.49190 4.54829 4.61397 4.67647 4.71046 4.79069 4.86195 4.90500 4.92882 4.99493 5.03804 5.06923 5.17032 5.19055 5.21320 5.30387 5.37640 5.40667 5.45235 5.49964 5.53351 5.73107 5.98561 6.12022 6.24009 6.29845 6.42147 6.54468 6.72434 6.95995 6.98849 7.06407 8.33279 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026395 B = 0.003231 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.538915 B = 8663.577126 C = 8961.621355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.053 4.053 3 C 0.108 3.892 4 O -0.591 6.591 5 C -0.105 4.105 6 C -0.116 4.116 7 C -0.151 4.151 8 C 0.092 3.908 9 H 0.082 0.918 10 N -0.679 5.679 11 C 0.133 3.867 12 C -0.197 4.197 13 C -0.072 4.072 14 C -0.246 4.246 15 C 0.080 3.920 16 C -0.506 4.506 17 H 0.072 0.928 18 C 0.037 3.963 19 N -0.825 5.825 20 Si 0.980 3.020 21 H -0.260 1.260 22 H -0.267 1.267 23 H -0.261 1.261 24 C -0.191 4.191 25 C -0.097 4.097 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.036 0.964 31 H 0.389 0.611 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.338 0.662 39 H 0.029 0.971 40 H 0.070 0.930 41 H 0.111 0.889 42 H 0.092 0.908 43 H 0.287 0.713 44 H 0.097 0.903 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.391 -5.411 -13.449 16.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.054 4.054 3 C 0.030 3.970 4 O -0.399 6.399 5 C -0.143 4.143 6 C -0.154 4.154 7 C -0.190 4.190 8 C -0.018 4.018 9 H 0.100 0.900 10 N -0.310 5.310 11 C 0.005 3.995 12 C -0.199 4.199 13 C -0.091 4.091 14 C -0.265 4.265 15 C 0.078 3.922 16 C -0.535 4.535 17 H 0.091 0.909 18 C -0.178 4.178 19 N -0.451 5.451 20 Si 0.801 3.199 21 H -0.184 1.184 22 H -0.191 1.191 23 H -0.186 1.186 24 C -0.210 4.210 25 C -0.116 4.116 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.238 0.762 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.157 0.843 39 H 0.047 0.953 40 H 0.088 0.912 41 H 0.129 0.871 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.115 0.885 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.023 -5.706 -13.330 17.078 hybrid contribution 1.672 0.384 0.747 1.871 sum -7.350 -5.322 -12.583 15.514 Atomic orbital electron populations 1.21732 0.93559 1.01631 1.01489 1.21176 0.96248 0.93482 0.94483 1.21897 0.96223 0.92256 0.86613 1.86353 1.76623 1.30009 1.46881 1.22340 1.00535 0.94923 0.96466 1.22424 1.01230 0.96595 0.95175 1.23091 0.99349 0.98849 0.97736 1.22350 0.95830 0.90442 0.93210 0.89952 1.60735 1.16821 1.51749 1.01658 1.20454 0.97795 0.93874 0.87350 1.19326 0.93741 0.99693 1.07127 1.20624 0.98138 0.94052 0.96242 1.21165 0.93834 1.02842 1.08700 1.17940 0.91871 0.92460 0.89944 1.19817 1.05238 0.97813 1.30645 0.90937 1.26726 1.00491 0.97286 0.93295 1.69876 1.26152 1.16086 1.33031 0.85290 0.76821 0.78557 0.79262 1.18419 1.19110 1.18567 1.21236 0.99017 0.98573 1.02200 1.20762 0.93883 0.98154 0.98768 0.93446 0.92522 0.91876 0.93916 0.94572 0.76226 0.91375 0.92464 0.90581 0.90919 0.92067 0.91256 0.84293 0.95325 0.91205 0.87099 0.88990 0.90192 0.88464 0.87913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 8.00 71.98 0.58 -2.02 16 2 C -0.05 -1.15 0.75 -51.46 -0.04 -1.19 16 3 C 0.11 2.62 4.77 71.98 0.34 2.96 16 4 O -0.59 -13.34 12.68 -148.98 -1.89 -15.23 16 5 C -0.10 -2.06 5.66 31.67 0.18 -1.88 16 6 C -0.12 -1.98 6.91 31.89 0.22 -1.76 16 7 C -0.15 -2.99 6.46 31.67 0.20 -2.79 16 8 C 0.09 2.06 2.87 45.64 0.13 2.19 16 9 H 0.08 1.84 7.34 -2.39 -0.02 1.83 16 10 N -0.68 -18.67 4.43 -491.82 -2.18 -20.85 16 11 C 0.13 4.18 5.63 85.56 0.48 4.67 16 12 C -0.20 -8.05 5.41 -19.67 -0.11 -8.16 16 13 C -0.07 -3.13 9.67 22.22 0.21 -2.92 16 14 C -0.25 -12.27 9.80 22.73 0.22 -12.05 16 15 C 0.08 4.40 5.58 -21.29 -0.12 4.28 16 16 C -0.51 -27.86 9.05 23.46 0.21 -27.65 16 17 H 0.07 3.87 7.91 -2.91 -0.02 3.85 16 18 C 0.04 1.88 5.13 85.26 0.44 2.32 16 19 N -0.83 -43.69 10.98 21.83 0.24 -43.45 16 20 Si 0.98 38.65 29.60 68.60 2.03 40.68 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 22 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 23 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 24 C -0.19 -10.07 8.70 22.73 0.20 -9.87 16 25 C -0.10 -4.37 9.67 22.22 0.21 -4.15 16 26 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.06 1.21 7.64 -2.39 -0.02 1.20 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.04 1.18 7.81 -2.39 -0.02 1.16 16 30 H 0.04 0.92 7.48 -2.39 -0.02 0.90 16 31 H 0.39 5.97 9.12 -74.06 -0.68 5.29 16 32 H 0.07 1.30 7.84 -2.39 -0.02 1.28 16 33 H 0.06 1.21 7.83 -2.39 -0.02 1.19 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 1.31 7.56 -2.39 -0.02 1.29 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.34 9.69 7.66 -89.69 -0.69 9.00 16 39 H 0.03 0.86 8.08 -2.38 -0.02 0.84 16 40 H 0.07 2.10 8.01 -2.39 -0.02 2.08 16 41 H 0.11 4.24 8.06 -2.92 -0.02 4.22 16 42 H 0.09 4.41 8.06 -2.91 -0.02 4.38 16 43 H 0.29 13.76 8.30 -92.70 -0.77 12.99 16 44 H 0.10 5.40 6.16 -2.91 -0.02 5.38 16 45 H 0.10 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -59.26 356.67 1.19 -58.07 By element: Atomic # 1 Polarization: 39.18 SS G_CDS: -0.39 Total: 38.80 kcal Atomic # 6 Polarization: -61.39 SS G_CDS: 3.37 Total: -58.02 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: -1.94 Total: -64.30 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -1.89 Total: -15.23 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Total: -59.26 1.19 -58.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331167015.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.224 kcal (2) G-P(sol) polarization free energy of solvation -59.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds