Wall clock time and date at job start Tue Mar 31 2020 05:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 110.05562 * 2 1 4 4 O 1.42895 * 109.47201 * 301.41645 * 3 2 1 5 5 C 1.54264 * 110.03404 * 238.58567 * 2 1 3 6 6 C 1.54885 * 104.19900 * 217.10190 * 5 2 1 7 7 C 1.54894 * 102.74476 * 37.94583 * 6 5 2 8 8 C 1.53873 * 110.03664 * 121.41990 * 2 1 3 9 9 H 1.09002 * 110.07516 * 238.59801 * 8 2 1 10 10 N 1.46910 * 110.02937 * 359.97438 * 8 2 1 11 11 C 1.46896 * 110.99978 * 203.62466 * 10 8 2 12 12 C 1.50698 * 109.46968 * 180.02562 * 11 10 8 13 13 C 1.38635 * 119.75492 * 89.99839 * 12 11 10 14 14 C 1.37611 * 120.25212 * 179.97438 * 13 12 11 15 15 C 1.40717 * 119.74429 * 359.97438 * 14 13 12 16 16 C 1.41393 * 120.24544 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00167 * 334.84990 * 16 15 14 18 18 C 1.39947 * 120.00447 * 154.85088 * 16 15 14 19 19 N 1.30829 * 119.99580 * 334.27844 * 18 16 15 20 20 Si 1.86794 * 120.00413 * 154.27772 * 18 16 15 21 21 H 1.48504 * 109.47556 * 180.02562 * 20 18 16 22 22 H 1.48495 * 109.47307 * 60.00117 * 20 18 16 23 23 H 1.48499 * 109.47060 * 300.00218 * 20 18 16 24 24 C 1.40717 * 119.51251 * 0.27207 * 15 14 13 25 25 C 1.37622 * 119.74258 * 359.45159 * 24 15 14 26 26 H 1.08995 * 109.47208 * 298.58121 * 1 2 3 27 27 H 1.08996 * 109.47470 * 58.58273 * 1 2 3 28 28 H 1.08996 * 109.47252 * 178.57970 * 1 2 3 29 29 H 1.09005 * 109.46810 * 61.41976 * 3 2 1 30 30 H 1.09003 * 109.47236 * 181.41417 * 3 2 1 31 31 H 0.96699 * 113.99868 * 179.97438 * 4 3 2 32 32 H 1.08998 * 110.48719 * 98.42522 * 5 2 1 33 33 H 1.09001 * 110.59711 * 335.83913 * 5 2 1 34 34 H 1.08995 * 110.76208 * 279.62957 * 6 5 2 35 35 H 1.09000 * 110.75641 * 156.25505 * 6 5 2 36 36 H 1.09003 * 110.48512 * 203.37719 * 7 6 5 37 37 H 1.08992 * 110.60526 * 80.79112 * 7 6 5 38 38 H 1.00900 * 110.99740 * 79.66689 * 10 8 2 39 39 H 1.08998 * 109.47591 * 59.99694 * 11 10 8 40 40 H 1.09008 * 109.47003 * 299.99715 * 11 10 8 41 41 H 1.07996 * 119.87152 * 359.95194 * 13 12 11 42 42 H 1.08001 * 120.13153 * 180.02562 * 14 13 12 43 43 H 0.96996 * 120.00212 * 354.29995 * 19 18 16 44 44 H 1.07998 * 120.12873 * 179.72603 * 24 15 14 45 45 H 1.07997 * 119.87625 * 180.27232 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0546 1.4372 0.0000 4 8 1.5583 2.1255 -1.1497 5 6 2.0584 -0.7554 -1.2369 6 6 3.3137 -1.5006 -0.7192 7 6 2.8874 -1.9407 0.7034 8 6 2.0571 -0.7536 1.2336 9 1 2.6865 -0.0959 1.8332 10 7 0.9328 -1.2460 2.0409 11 6 1.3389 -1.4549 3.4371 12 6 0.1625 -1.9595 4.2323 13 6 -0.0642 -3.3233 4.3354 14 6 -1.1351 -3.7953 5.0594 15 6 -2.0013 -2.8878 5.6968 16 6 -3.1045 -3.3612 6.4438 17 1 -3.5343 -4.3263 6.2196 18 6 -3.6397 -2.5792 7.4736 19 7 -2.8879 -1.7010 8.0862 20 14 -5.4272 -2.7892 7.9735 21 1 -5.7457 -1.8501 9.0790 22 1 -5.6534 -4.1846 8.4283 23 1 -6.3038 -2.4994 6.8105 24 6 -1.7645 -1.5055 5.5809 25 6 -0.6841 -1.0563 4.8565 26 1 -0.3633 0.4916 0.9024 27 1 -0.3634 0.5357 -0.8769 28 1 -0.3633 -1.0273 -0.0255 29 1 1.7174 1.9471 0.9025 30 1 3.1443 1.4263 -0.0254 31 1 1.8512 3.0448 -1.2146 32 1 2.3296 -0.0535 -2.0254 33 1 1.3152 -1.4658 -1.5988 34 1 4.1710 -0.8290 -0.6752 35 1 3.5325 -2.3677 -1.3424 36 1 3.7637 -2.1038 1.3308 37 1 2.2778 -2.8431 0.6592 38 1 0.5470 -2.0907 1.6463 39 1 1.6860 -0.5119 3.8596 40 1 2.1444 -2.1884 3.4754 41 1 0.6020 -4.0178 3.8455 42 1 -1.3096 -4.8581 5.1388 43 1 -1.9406 -1.6488 7.8847 44 1 -2.4256 -0.8001 6.0623 45 1 -0.4978 0.0040 4.7698 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331167016.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:47 Heat of formation + Delta-G solvation = -71.918911 kcal Electronic energy + Delta-G solvation = -22971.890829 eV Core-core repulsion = 19758.760803 eV Total energy + Delta-G solvation = -3213.130026 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.71179 -39.64061 -37.36404 -36.27668 -34.79505 -32.40340 -31.78830 -31.17804 -28.74844 -27.54711 -26.91114 -25.10467 -24.06495 -22.98840 -21.80957 -21.68428 -19.83191 -19.48023 -18.21396 -17.02347 -16.74315 -16.41979 -16.20205 -15.85774 -15.55162 -15.40873 -15.14361 -14.78398 -14.32983 -14.26551 -14.05604 -13.86235 -13.66928 -13.49393 -13.14780 -12.94174 -12.75046 -12.55925 -12.42484 -12.12954 -11.97992 -11.87537 -11.67587 -11.62697 -11.49487 -11.44109 -11.24484 -11.20398 -10.85092 -10.75713 -9.57819 -9.45202 -9.14289 -9.10922 -6.44081 0.89487 0.97669 1.49542 1.62755 1.79146 2.33198 2.64341 3.17206 3.42066 3.61792 3.72034 3.97341 3.97460 4.22151 4.25209 4.32946 4.34581 4.43283 4.47767 4.50146 4.57645 4.61130 4.69061 4.74654 4.80686 4.90608 4.91834 4.98328 5.09033 5.11278 5.15046 5.21135 5.26363 5.29874 5.43948 5.45759 5.48597 5.60286 5.76134 5.80773 5.86310 6.11531 6.26633 6.29664 6.43668 6.53986 6.82115 6.95405 6.96411 8.04805 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027332 B = 0.003165 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.203535 B = 8844.696529 C = 9298.650773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.055 4.055 3 C 0.093 3.907 4 O -0.585 6.585 5 C -0.109 4.109 6 C -0.115 4.115 7 C -0.150 4.150 8 C 0.092 3.908 9 H 0.081 0.919 10 N -0.679 5.679 11 C 0.133 3.867 12 C -0.202 4.202 13 C -0.073 4.073 14 C -0.246 4.246 15 C 0.070 3.930 16 C -0.565 4.565 17 H 0.068 0.932 18 C 0.004 3.996 19 N -0.820 5.820 20 Si 1.116 2.884 21 H -0.270 1.270 22 H -0.257 1.257 23 H -0.265 1.265 24 C -0.240 4.240 25 C -0.066 4.066 26 H 0.044 0.956 27 H 0.041 0.959 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.058 0.942 31 H 0.393 0.607 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.339 0.661 39 H 0.066 0.934 40 H 0.035 0.965 41 H 0.118 0.882 42 H 0.093 0.907 43 H 0.282 0.718 44 H 0.082 0.918 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.765 4.319 -15.039 19.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.056 4.056 3 C 0.015 3.985 4 O -0.393 6.393 5 C -0.147 4.147 6 C -0.153 4.153 7 C -0.189 4.189 8 C -0.019 4.019 9 H 0.099 0.901 10 N -0.309 5.309 11 C 0.005 3.995 12 C -0.204 4.204 13 C -0.091 4.091 14 C -0.265 4.265 15 C 0.068 3.932 16 C -0.594 4.594 17 H 0.087 0.913 18 C -0.212 4.212 19 N -0.443 5.443 20 Si 0.933 3.067 21 H -0.195 1.195 22 H -0.182 1.182 23 H -0.190 1.190 24 C -0.259 4.259 25 C -0.085 4.085 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.243 0.757 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.158 0.842 39 H 0.085 0.915 40 H 0.053 0.947 41 H 0.136 0.864 42 H 0.111 0.889 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.113 5.012 -13.976 17.965 hybrid contribution 1.782 -0.923 -0.602 2.095 sum 11.895 4.089 -14.578 19.254 Atomic orbital electron populations 1.21367 0.94357 1.00537 1.00025 1.21178 0.96126 0.93669 0.94632 1.22156 0.97097 0.91802 0.87439 1.86429 1.76667 1.30169 1.46004 1.22384 0.97190 0.98476 0.96628 1.22416 0.97540 1.00157 0.95219 1.23074 1.00215 0.97901 0.97694 1.22216 0.90414 0.95871 0.93359 0.90126 1.60694 1.31473 1.37289 1.01450 1.20447 0.92591 0.98873 0.87552 1.19342 1.01618 0.92476 1.06954 1.20742 0.96227 0.95012 0.97133 1.21107 0.99037 0.97599 1.08784 1.17985 0.91627 0.92221 0.91413 1.20761 1.14792 1.06418 1.17417 0.91335 1.28407 1.10026 0.90497 0.92277 1.70569 1.09029 1.30067 1.34657 0.83028 0.68158 0.78253 0.77279 1.19483 1.18156 1.19028 1.21098 1.01636 0.95068 1.08132 1.20678 0.94046 0.98152 0.95611 0.93735 0.93967 0.93806 0.94233 0.92394 0.75740 0.91100 0.92307 0.90624 0.90833 0.91071 0.91992 0.84170 0.91512 0.94707 0.86448 0.88871 0.90554 0.89940 0.87754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.77 7.23 71.98 0.52 -2.25 16 2 C -0.06 -1.19 0.75 -51.46 -0.04 -1.23 16 3 C 0.09 1.74 5.65 71.98 0.41 2.15 16 4 O -0.58 -10.85 12.26 -148.98 -1.83 -12.68 16 5 C -0.11 -2.08 5.81 31.67 0.18 -1.90 16 6 C -0.12 -1.84 6.91 31.89 0.22 -1.62 16 7 C -0.15 -2.78 6.40 31.67 0.20 -2.58 16 8 C 0.09 2.00 2.86 45.64 0.13 2.13 16 9 H 0.08 1.71 7.36 -2.39 -0.02 1.69 16 10 N -0.68 -18.80 4.45 -491.83 -2.19 -20.99 16 11 C 0.13 4.11 5.63 85.56 0.48 4.60 16 12 C -0.20 -8.18 5.41 -19.67 -0.11 -8.29 16 13 C -0.07 -3.06 9.67 22.22 0.21 -2.84 16 14 C -0.25 -12.17 9.80 22.73 0.22 -11.94 16 15 C 0.07 3.86 5.30 -21.29 -0.11 3.75 16 16 C -0.57 -31.67 8.98 23.46 0.21 -31.46 16 17 H 0.07 3.75 7.96 -2.91 -0.02 3.73 16 18 C 0.00 0.19 4.93 85.26 0.42 0.61 16 19 N -0.82 -45.76 12.32 21.83 0.27 -45.49 16 20 Si 1.12 44.61 30.00 68.60 2.06 46.67 16 21 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 22 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 23 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 24 C -0.24 -12.76 7.96 22.73 0.18 -12.58 16 25 C -0.07 -3.03 9.67 22.22 0.21 -2.82 16 26 H 0.04 1.34 7.81 -2.39 -0.02 1.32 16 27 H 0.04 1.12 7.64 -2.39 -0.02 1.10 16 28 H 0.04 1.19 7.44 -2.39 -0.02 1.17 16 29 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.39 3.71 9.12 -74.06 -0.68 3.03 16 32 H 0.07 1.36 7.35 -2.39 -0.02 1.34 16 33 H 0.06 1.20 7.84 -2.39 -0.02 1.18 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.06 1.24 7.58 -2.39 -0.02 1.23 16 38 H 0.34 9.72 7.62 -89.69 -0.68 9.04 16 39 H 0.07 2.01 8.01 -2.39 -0.02 1.99 16 40 H 0.03 0.98 8.04 -2.38 -0.02 0.96 16 41 H 0.12 4.15 8.06 -2.91 -0.02 4.12 16 42 H 0.09 4.44 8.06 -2.91 -0.02 4.42 16 43 H 0.28 16.38 6.70 -92.71 -0.62 15.76 16 44 H 0.08 4.66 6.50 -2.91 -0.02 4.64 16 45 H 0.10 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -62.15 355.17 1.43 -60.72 By element: Atomic # 1 Polarization: 38.28 SS G_CDS: -0.23 Total: 38.04 kcal Atomic # 6 Polarization: -69.63 SS G_CDS: 3.35 Total: -66.27 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: -1.92 Total: -66.48 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -1.83 Total: -12.68 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.06 Total: 46.67 kcal Total: -62.15 1.43 -60.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331167016.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.199 kcal (2) G-P(sol) polarization free energy of solvation -62.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds