Wall clock time and date at job start Tue Mar 31 2020 06:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.50529 * 2 1 4 4 C 1.53041 * 109.49874 * 120.07998 * 2 1 3 5 5 N 1.46848 * 109.51804 * 179.11715 * 4 2 1 6 6 C 1.46899 * 110.99786 * 174.15796 * 5 4 2 7 7 C 1.50699 * 109.47255 * 169.99780 * 6 5 4 8 8 C 1.38640 * 119.74784 * 90.00187 * 7 6 5 9 9 C 1.37618 * 120.25027 * 179.97438 * 8 7 6 10 10 C 1.40718 * 119.74298 * 359.97438 * 9 8 7 11 11 C 1.41387 * 120.24052 * 179.72727 * 10 9 8 12 12 H 1.08005 * 120.00179 * 155.53201 * 11 10 9 13 13 C 1.39947 * 120.00544 * 335.52846 * 11 10 9 14 14 N 1.30831 * 119.99768 * 341.99415 * 13 11 10 15 15 Si 1.86795 * 120.00503 * 161.98844 * 13 11 10 16 16 H 1.48503 * 109.47228 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47130 * 120.00125 * 15 13 11 18 18 H 1.48499 * 109.47190 * 240.00530 * 15 13 11 19 19 C 1.40707 * 119.51174 * 0.02562 * 10 9 8 20 20 C 1.37619 * 119.74841 * 359.97438 * 19 10 9 21 21 C 1.46842 * 111.20010 * 298.25630 * 5 4 2 22 22 C 1.53035 * 109.52440 * 61.74565 * 21 5 4 23 23 C 1.53114 * 109.50187 * 239.87908 * 2 1 3 24 24 H 1.09004 * 109.52739 * 302.31661 * 23 2 1 25 25 O 1.42898 * 109.52218 * 62.43961 * 23 2 1 26 26 H 1.09001 * 109.46985 * 299.92232 * 1 2 3 27 27 H 1.09003 * 109.46577 * 59.91770 * 1 2 3 28 28 H 1.08993 * 109.47587 * 179.91875 * 1 2 3 29 29 H 1.08999 * 109.46688 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.46761 * 300.07924 * 3 2 1 31 31 H 1.08998 * 109.47200 * 60.07765 * 3 2 1 32 32 H 1.08993 * 109.46299 * 59.10401 * 4 2 1 33 33 H 1.08997 * 109.45266 * 299.12332 * 4 2 1 34 34 H 1.09010 * 109.47055 * 50.00419 * 6 5 4 35 35 H 1.09002 * 109.47701 * 290.00075 * 6 5 4 36 36 H 1.08005 * 119.87404 * 359.95507 * 8 7 6 37 37 H 1.07995 * 120.12862 * 179.97438 * 9 8 7 38 38 H 0.96998 * 120.00154 * 180.02562 * 14 13 11 39 39 H 1.08009 * 120.12802 * 179.97438 * 19 10 9 40 40 H 1.08003 * 119.87956 * 179.97438 * 20 19 10 41 41 H 1.09004 * 109.46506 * 181.76015 * 21 5 4 42 42 H 1.08998 * 109.46422 * 301.72593 * 21 5 4 43 43 H 1.08997 * 109.50535 * 180.87975 * 22 21 5 44 44 H 1.08994 * 109.50534 * 60.75903 * 22 21 5 45 45 H 0.96701 * 114.00030 * 179.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 6 2.0409 -0.7231 1.2484 5 7 3.5092 -0.7418 1.2381 6 6 4.0372 -1.3051 2.4879 7 6 5.5197 -1.5364 2.3478 8 6 6.4087 -0.5308 2.6951 9 6 7.7646 -0.7311 2.5719 10 6 8.2476 -1.9625 2.0917 11 6 9.6384 -2.1776 1.9554 12 1 10.0342 -3.1823 1.9775 13 6 10.5022 -1.0888 1.7918 14 7 10.0285 0.0711 1.4150 15 14 12.3314 -1.2913 2.1115 16 1 12.6100 -2.6907 2.5230 17 1 13.0879 -0.9804 0.8720 18 1 12.7506 -0.3641 3.1930 19 6 7.3361 -2.9759 1.7423 20 6 5.9844 -2.7535 1.8737 21 6 4.0229 -1.4731 0.0730 22 6 3.5712 -0.7725 -1.2104 23 6 2.0412 -0.7243 -1.2484 24 1 1.6451 -1.7396 -1.2684 25 8 1.6132 -0.0218 -2.4169 26 1 -0.3633 0.5126 0.8907 27 1 -0.3632 0.5151 -0.8893 28 1 -0.3634 -1.0276 -0.0015 29 1 3.1309 1.4415 -0.0005 30 1 1.6767 1.9566 -0.8893 31 1 1.6790 1.9558 0.8907 32 1 1.6647 -1.7460 1.2550 33 1 1.6905 -0.2013 2.1389 34 1 3.5400 -2.2521 2.6982 35 1 3.8538 -0.6089 3.3063 36 1 6.0356 0.4134 3.0635 37 1 8.4553 0.0537 2.8426 38 1 10.6273 0.8257 1.3012 39 1 7.6959 -3.9247 1.3723 40 1 5.2828 -3.5297 1.6057 41 1 5.1120 -1.4964 0.1100 42 1 3.6374 -2.4926 0.0852 43 1 3.9395 -1.3243 -2.0752 44 1 3.9678 0.2425 -1.2298 45 1 1.9025 -0.4256 -3.2466 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336214619.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:02 Heat of formation + Delta-G solvation = -58.315541 kcal Electronic energy + Delta-G solvation = -23592.368467 eV Core-core repulsion = 20379.828327 eV Total energy + Delta-G solvation = -3212.540139 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.04721 -39.47114 -37.35432 -35.80046 -34.85204 -32.81572 -31.57835 -31.13412 -28.45738 -28.08193 -27.02805 -25.67643 -23.84534 -22.92213 -22.58336 -21.17173 -19.46749 -19.18445 -18.16372 -17.18389 -16.92040 -16.43543 -15.93249 -15.78020 -15.60464 -15.20092 -15.13448 -14.78910 -14.26696 -14.19713 -13.96170 -13.77398 -13.51930 -13.28819 -13.01715 -12.88495 -12.76672 -12.74651 -12.56719 -12.48000 -12.29319 -12.11614 -12.00256 -11.78555 -11.57728 -11.31057 -11.22295 -11.04305 -10.96913 -10.65737 -9.34958 -9.27780 -8.99226 -8.63150 -6.32276 0.94851 1.15918 1.37571 1.48902 1.52727 2.20594 2.67260 3.14182 3.33885 3.68798 3.80111 3.81976 4.05584 4.14817 4.28239 4.32166 4.38416 4.45602 4.51889 4.55854 4.58565 4.70478 4.76960 4.85118 4.86079 4.89440 4.92610 5.07491 5.09618 5.16080 5.17306 5.18606 5.23683 5.34641 5.40242 5.44737 5.47697 5.62479 5.72182 5.95332 6.11010 6.17343 6.31122 6.35718 6.40517 6.72401 6.91338 6.95553 7.05369 8.33673 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027940 B = 0.003608 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.918980 B = 7758.710712 C = 8005.897083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.053 4.053 3 C -0.122 4.122 4 C 0.066 3.934 5 N -0.539 5.539 6 C 0.125 3.875 7 C -0.197 4.197 8 C -0.085 4.085 9 C -0.191 4.191 10 C 0.081 3.919 11 C -0.503 4.503 12 H 0.073 0.927 13 C 0.036 3.964 14 N -0.825 5.825 15 Si 0.980 3.020 16 H -0.259 1.259 17 H -0.266 1.266 18 H -0.264 1.264 19 C -0.242 4.242 20 C -0.079 4.079 21 C 0.064 3.936 22 C -0.145 4.145 23 C 0.122 3.878 24 H 0.057 0.943 25 O -0.572 6.572 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.037 0.963 33 H 0.085 0.915 34 H 0.037 0.963 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.287 0.713 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.060 0.940 42 H 0.030 0.970 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.857 -0.463 -3.498 15.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.054 4.054 3 C -0.179 4.179 4 C -0.061 4.061 5 N -0.264 5.264 6 C -0.002 4.002 7 C -0.199 4.199 8 C -0.104 4.104 9 C -0.210 4.210 10 C 0.079 3.921 11 C -0.533 4.533 12 H 0.091 0.909 13 C -0.179 4.179 14 N -0.451 5.451 15 Si 0.801 3.199 16 H -0.182 1.182 17 H -0.191 1.191 18 H -0.189 1.189 19 C -0.262 4.262 20 C -0.098 4.098 21 C -0.065 4.065 22 C -0.183 4.183 23 C 0.063 3.937 24 H 0.075 0.925 25 O -0.379 6.379 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.104 0.896 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.127 0.873 41 H 0.079 0.921 42 H 0.048 0.952 43 H 0.094 0.906 44 H 0.080 0.920 45 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -14.915 0.645 -3.151 15.257 hybrid contribution 1.311 -1.150 -0.316 1.773 sum -13.603 -0.505 -3.467 14.047 Atomic orbital electron populations 1.21724 0.92699 1.02058 1.02321 1.20570 0.96296 0.96116 0.92369 1.21612 1.00863 0.94643 1.00799 1.22194 0.86733 0.98922 0.98293 1.61991 1.07794 1.54447 1.02143 1.20693 0.90472 0.97433 0.91571 1.19245 0.94390 0.94855 1.11376 1.20714 0.92924 0.97390 0.99388 1.21237 0.94599 0.98994 1.06204 1.17930 0.93670 0.92052 0.88427 1.19853 0.92448 0.94448 1.46501 0.90895 1.26732 1.05991 0.93923 0.91220 1.69898 1.39615 1.02870 1.32707 0.85196 0.76032 0.79722 0.78978 1.18211 1.19063 1.18901 1.21125 0.93625 1.00133 1.11295 1.20610 0.94325 0.96189 0.98648 1.21943 1.00162 0.94351 0.89996 1.22322 0.97155 1.01555 0.97305 1.21754 0.91792 0.94325 0.85872 0.92486 1.86455 1.78746 1.56229 1.16511 0.91761 0.92193 0.92303 0.93441 0.93078 0.92819 0.94459 0.89618 0.94451 0.90570 0.88119 0.88595 0.90246 0.88822 0.87296 0.92114 0.95155 0.90633 0.91969 0.76092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.36 71.98 0.60 -1.82 16 2 C -0.05 -1.20 0.60 -52.13 -0.03 -1.23 16 3 C -0.12 -3.09 7.87 71.98 0.57 -2.52 16 4 C 0.07 1.59 4.14 86.33 0.36 1.95 16 5 N -0.54 -16.41 4.08 -900.93 -3.68 -20.08 16 6 C 0.12 4.07 5.42 85.56 0.46 4.53 16 7 C -0.20 -8.13 4.14 -19.67 -0.08 -8.22 16 8 C -0.09 -3.97 9.67 22.22 0.21 -3.76 16 9 C -0.19 -10.20 8.69 22.73 0.20 -10.00 16 10 C 0.08 4.46 5.57 -21.29 -0.12 4.34 16 11 C -0.50 -27.63 9.05 23.46 0.21 -27.41 16 12 H 0.07 3.88 7.91 -2.91 -0.02 3.86 16 13 C 0.04 1.85 5.14 85.26 0.44 2.29 16 14 N -0.82 -44.04 10.97 21.83 0.24 -43.80 16 15 Si 0.98 38.81 29.60 68.60 2.03 40.84 16 16 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 17 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 18 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 19 C -0.24 -11.89 9.80 22.73 0.22 -11.67 16 20 C -0.08 -3.36 7.75 22.22 0.17 -3.19 16 21 C 0.06 1.99 4.57 86.33 0.39 2.39 16 22 C -0.15 -3.89 5.37 30.65 0.16 -3.72 16 23 C 0.12 2.73 2.63 30.67 0.08 2.81 16 24 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 25 O -0.57 -11.95 12.01 -148.98 -1.79 -13.74 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.06 1.17 7.76 -2.39 -0.02 1.15 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 1.43 6.01 -2.39 -0.01 1.42 16 30 H 0.05 1.29 7.64 -2.39 -0.02 1.28 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.09 1.90 8.12 -2.39 -0.02 1.88 16 34 H 0.04 1.12 8.02 -2.38 -0.02 1.10 16 35 H 0.08 2.36 8.08 -2.39 -0.02 2.34 16 36 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 37 H 0.10 5.42 6.18 -2.91 -0.02 5.40 16 38 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 39 H 0.09 4.39 8.06 -2.91 -0.02 4.37 16 40 H 0.11 4.00 8.06 -2.91 -0.02 3.98 16 41 H 0.06 2.39 5.64 -2.38 -0.01 2.38 16 42 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.06 1.92 6.58 -2.39 -0.02 1.90 16 45 H 0.39 5.14 9.09 -74.06 -0.67 4.47 16 Total: -1.00 -60.23 347.25 0.95 -59.28 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: 0.29 Total: 32.75 kcal Atomic # 6 Polarization: -59.10 SS G_CDS: 3.85 Total: -55.25 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -3.44 Total: -63.89 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -1.79 Total: -13.74 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -60.23 0.95 -59.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336214619.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.962 kcal (2) G-P(sol) polarization free energy of solvation -60.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds