Wall clock time and date at job start Tue Mar 31 2020 06:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47115 * 2 1 4 4 C 1.38162 * 119.97086 * 265.02390 * 3 2 1 5 5 C 1.38711 * 119.94551 * 179.97438 * 4 3 2 6 6 O 1.35894 * 120.05919 * 180.02562 * 5 4 3 7 7 C 1.42907 * 117.00121 * 180.02562 * 6 5 4 8 8 C 1.38760 * 119.88410 * 0.02562 * 5 4 3 9 9 C 1.38122 * 119.94424 * 359.69683 * 8 5 4 10 10 C 1.38244 * 119.97219 * 84.99588 * 3 2 1 11 11 C 1.50699 * 119.94564 * 0.02562 * 10 3 2 12 12 N 1.46897 * 109.47683 * 79.98899 * 11 10 3 13 13 C 1.46904 * 111.00347 * 179.97438 * 12 11 10 14 14 C 1.52993 * 109.47003 * 185.35546 * 13 12 11 15 15 C 1.50699 * 115.55396 * 65.05453 * 14 13 12 16 16 H 1.07998 * 119.99822 * 265.45768 * 15 14 13 17 17 C 1.37879 * 120.00325 * 85.45101 * 15 14 13 18 18 N 1.31515 * 119.99719 * 353.59237 * 17 15 14 19 19 Si 1.86797 * 120.00128 * 173.58957 * 17 15 14 20 20 H 1.48500 * 109.47014 * 90.00594 * 19 17 15 21 21 H 1.48497 * 109.46902 * 210.00051 * 19 17 15 22 22 H 1.48494 * 109.47083 * 330.00365 * 19 17 15 23 23 C 1.52998 * 117.49983 * 279.37743 * 14 13 12 24 24 C 1.53008 * 117.49631 * 210.72307 * 14 13 12 25 25 H 1.09007 * 109.46926 * 300.00061 * 1 2 3 26 26 H 1.08996 * 109.47626 * 60.00102 * 1 2 3 27 27 H 1.08999 * 109.47352 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46912 * 239.99600 * 2 1 3 29 29 H 1.08996 * 109.46888 * 119.99990 * 2 1 3 30 30 H 1.07995 * 120.02833 * 359.97438 * 4 3 2 31 31 H 1.09001 * 109.47419 * 59.99801 * 7 6 5 32 32 H 1.08996 * 109.46789 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.46667 * 299.99847 * 7 6 5 34 34 H 1.08004 * 120.02364 * 180.02562 * 8 5 4 35 35 H 1.08004 * 119.96705 * 180.31604 * 9 8 5 36 36 H 1.09005 * 109.47013 * 199.99497 * 11 10 3 37 37 H 1.09003 * 109.46823 * 319.98853 * 11 10 3 38 38 H 1.00892 * 111.00341 * 303.95969 * 12 11 10 39 39 H 1.08999 * 109.46990 * 305.35863 * 13 12 11 40 40 H 1.09000 * 109.46506 * 65.35350 * 13 12 11 41 41 H 0.97000 * 120.00233 * 179.97438 * 18 17 15 42 42 H 1.09000 * 117.49875 * 0.02562 * 23 14 13 43 43 H 1.09007 * 117.50079 * 145.02050 * 23 14 13 44 44 H 1.09005 * 117.49487 * 214.98119 * 24 14 13 45 45 H 1.08995 * 117.49467 * 359.97333 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3603 2.0369 -1.1924 5 6 2.8221 3.3449 -1.1918 6 8 3.1449 3.9533 -2.3633 7 6 3.6143 5.3009 -2.2867 8 6 2.9540 4.0310 0.0071 9 6 2.6194 3.4125 1.1959 10 6 2.1641 2.1068 1.1930 11 6 1.8056 1.4323 2.4921 12 7 2.9108 0.5608 2.9128 13 6 2.5962 -0.1144 4.1789 14 6 3.8172 -0.9057 4.6520 15 6 5.0251 -0.0812 5.0158 16 1 5.7989 0.0953 4.2834 17 6 5.1423 0.4477 6.2837 18 7 4.1460 0.3409 7.1354 19 14 6.7163 1.3160 6.7916 20 1 6.6109 2.7614 6.4676 21 1 6.9237 1.1502 8.2526 22 1 7.8653 0.7269 6.0584 23 6 4.0623 -2.2746 4.0142 24 6 3.5635 -2.1811 5.4583 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.2572 1.5006 -2.1241 31 1 4.5186 5.3368 -1.6792 32 1 3.8351 5.6662 -3.2896 33 1 2.8467 5.9278 -1.8329 34 1 3.3130 5.0497 0.0101 35 1 2.7170 3.9479 2.1287 36 1 1.6276 2.1883 3.2569 37 1 0.9041 0.8352 2.3547 38 1 3.1380 -0.1082 2.1926 39 1 2.3312 0.6288 4.9309 40 1 1.7579 -0.7947 4.0293 41 1 4.2285 0.7126 8.0275 42 1 3.3539 -2.6113 3.2573 43 1 5.0973 -2.5791 3.8580 44 1 4.2704 -2.4239 6.2516 45 1 2.5267 -2.4560 5.6520 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337263220.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:51 Heat of formation + Delta-G solvation = 3.588650 kcal Electronic energy + Delta-G solvation = -23022.195262 eV Core-core repulsion = 19812.339490 eV Total energy + Delta-G solvation = -3209.855772 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.23507 -38.27079 -36.82915 -34.33993 -33.65653 -31.78980 -30.67827 -29.32945 -27.62943 -25.96027 -25.05196 -23.92819 -22.88899 -21.65126 -20.97511 -20.28338 -18.93016 -17.68359 -16.61623 -16.21823 -15.78221 -15.32178 -14.86557 -14.49643 -14.33661 -14.06918 -13.97338 -13.54806 -13.30981 -13.25332 -13.00162 -12.76965 -12.42577 -12.08448 -11.96648 -11.54474 -11.45612 -11.23899 -11.14423 -10.88969 -10.82558 -10.75107 -10.59089 -10.52242 -10.39012 -10.11752 -9.41476 -8.74530 -8.69125 -8.32043 -8.09383 -7.91568 -7.44326 -5.91006 -3.91718 1.43831 1.56651 3.23355 3.37337 3.43542 3.47992 3.81817 4.51888 4.76666 4.83839 4.96442 5.00495 5.02525 5.10646 5.14849 5.31542 5.34523 5.37237 5.39835 5.45986 5.52665 5.59263 5.72187 5.80509 5.91924 5.96562 6.09243 6.19471 6.23393 6.25921 6.38696 6.40982 6.52927 6.56462 6.67243 6.78101 6.83757 6.91252 6.93819 7.16429 7.42636 7.51929 7.63056 7.99627 8.02597 8.21546 8.61570 9.07274 9.71027 11.18978 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015387 B = 0.004325 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.328141 B = 6473.008734 C = 7719.182240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 C -0.038 4.038 4 C -0.151 4.151 5 C 0.119 3.881 6 O -0.322 6.322 7 C 0.029 3.971 8 C -0.212 4.212 9 C -0.058 4.058 10 C -0.099 4.099 11 C 0.098 3.902 12 N -0.662 5.662 13 C 0.107 3.893 14 C 0.054 3.946 15 C -0.467 4.467 16 H 0.059 0.941 17 C 0.067 3.933 18 N -0.887 5.887 19 Si 0.887 3.113 20 H -0.282 1.282 21 H -0.289 1.289 22 H -0.275 1.275 23 C -0.216 4.216 24 C -0.158 4.158 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.125 0.875 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.053 0.947 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.074 0.926 37 H 0.030 0.970 38 H 0.329 0.671 39 H 0.076 0.924 40 H -0.006 1.006 41 H 0.256 0.744 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.578 5.442 -15.773 17.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 C -0.039 4.039 4 C -0.170 4.170 5 C 0.074 3.926 6 O -0.236 6.236 7 C -0.066 4.066 8 C -0.231 4.231 9 C -0.077 4.077 10 C -0.100 4.100 11 C -0.031 4.031 12 N -0.293 5.293 13 C -0.021 4.021 14 C 0.053 3.947 15 C -0.505 4.505 16 H 0.077 0.923 17 C -0.134 4.134 18 N -0.525 5.525 19 Si 0.715 3.285 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.200 1.200 23 C -0.254 4.254 24 C -0.196 4.196 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.143 0.857 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.072 0.928 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.093 0.907 37 H 0.048 0.952 38 H 0.148 0.852 39 H 0.095 0.905 40 H 0.012 0.988 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.292 5.926 -15.450 17.704 hybrid contribution 0.327 0.172 0.289 0.470 sum -5.964 6.098 -15.161 17.396 Atomic orbital electron populations 1.21752 0.94687 1.01718 1.02177 1.20604 0.96227 0.92575 1.03187 1.19507 0.96904 0.95683 0.91804 1.20154 1.05681 0.92812 0.98324 1.18938 0.96470 0.92625 0.84547 1.86028 1.80430 1.28181 1.28933 1.23006 0.98941 0.81143 1.03553 1.21170 1.08544 1.00993 0.92344 1.20859 0.95220 0.94268 0.97329 1.19688 1.01589 0.94329 0.94398 1.20865 0.92721 0.96660 0.92845 1.60360 1.38062 1.25396 1.05509 1.21567 0.94666 0.95987 0.89919 1.18808 0.94574 0.84968 0.96365 1.20305 1.03098 1.30830 0.96282 0.92322 1.24921 0.95940 0.95862 0.96696 1.70008 1.30364 1.45887 1.06204 0.86681 0.84369 0.80019 0.77401 1.20848 1.21506 1.20029 1.22990 0.99738 1.06932 0.95693 1.22515 0.98608 1.05852 0.92675 0.92304 0.92641 0.92384 0.90907 0.90546 0.85680 0.92632 0.88574 0.92827 0.85829 0.85536 0.90723 0.95183 0.85219 0.90531 0.98823 0.93397 0.92258 0.90555 0.90096 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.75 37.16 0.36 -1.20 16 2 C -0.09 -1.07 5.39 -27.88 -0.15 -1.22 16 3 C -0.04 -0.53 5.12 -104.65 -0.54 -1.07 16 4 C -0.15 -2.04 9.62 -39.43 -0.38 -2.42 16 5 C 0.12 1.62 6.69 -39.21 -0.26 1.36 16 6 O -0.32 -4.01 10.50 -19.41 -0.20 -4.21 16 7 C 0.03 0.24 9.81 101.05 0.99 1.24 16 8 C -0.21 -2.82 9.04 -39.43 -0.36 -3.18 16 9 C -0.06 -0.85 9.66 -39.61 -0.38 -1.24 16 10 C -0.10 -1.51 5.39 -104.60 -0.56 -2.08 16 11 C 0.10 1.61 5.06 -4.98 -0.03 1.59 16 12 N -0.66 -12.97 6.35 -115.06 -0.73 -13.70 16 13 C 0.11 2.37 5.51 -3.83 -0.02 2.35 16 14 C 0.05 1.31 1.55 -155.66 -0.24 1.07 16 15 C -0.47 -12.81 8.74 -34.44 -0.30 -13.11 16 16 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 17 C 0.07 1.86 5.39 -17.82 -0.10 1.76 16 18 N -0.89 -25.22 12.92 55.43 0.72 -24.51 16 19 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C -0.22 -4.71 9.96 -26.70 -0.27 -4.98 16 24 C -0.16 -3.74 9.41 -26.69 -0.25 -3.99 16 25 H 0.06 0.67 6.72 -51.93 -0.35 0.32 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.78 8.05 -51.93 -0.42 0.36 16 29 H 0.08 1.02 5.43 -51.93 -0.28 0.73 16 30 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 31 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 32 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 34 H 0.12 1.36 6.30 -52.48 -0.33 1.03 16 35 H 0.13 1.78 8.03 -52.48 -0.42 1.35 16 36 H 0.07 1.27 8.00 -51.93 -0.42 0.85 16 37 H 0.03 0.46 5.84 -51.93 -0.30 0.16 16 38 H 0.33 6.15 6.93 -39.30 -0.27 5.88 16 39 H 0.08 1.90 8.13 -51.93 -0.42 1.47 16 40 H -0.01 -0.13 8.09 -51.93 -0.42 -0.55 16 41 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 44 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 45 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 364.73 15.07 5.50 5.50 Total: -1.00 -29.61 364.73 -9.58 -39.19 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -7.36 Total: 6.26 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: -2.48 Total: -25.11 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -0.01 Total: -38.21 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -0.20 Total: -4.21 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.61 -9.58 -39.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337263220.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.775 kcal (2) G-P(sol) polarization free energy of solvation -29.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds