Wall clock time and date at job start Tue Mar 31 2020 06:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47115 * 2 1 4 4 C 1.38162 * 119.97086 * 265.02390 * 3 2 1 5 5 C 1.38711 * 119.94551 * 179.97438 * 4 3 2 6 6 O 1.35894 * 120.05919 * 180.02562 * 5 4 3 7 7 C 1.42907 * 117.00121 * 180.02562 * 6 5 4 8 8 C 1.38760 * 119.88410 * 0.02562 * 5 4 3 9 9 C 1.38122 * 119.94424 * 359.69683 * 8 5 4 10 10 C 1.38244 * 119.97219 * 84.99588 * 3 2 1 11 11 C 1.50699 * 119.94564 * 0.02562 * 10 3 2 12 12 N 1.46897 * 109.47683 * 79.98899 * 11 10 3 13 13 C 1.46904 * 111.00347 * 179.97438 * 12 11 10 14 14 C 1.52993 * 109.47003 * 185.35546 * 13 12 11 15 15 C 1.50699 * 115.55396 * 65.05453 * 14 13 12 16 16 H 1.07998 * 119.99822 * 265.45768 * 15 14 13 17 17 C 1.37879 * 120.00325 * 85.45101 * 15 14 13 18 18 N 1.31515 * 119.99719 * 353.59237 * 17 15 14 19 19 Si 1.86797 * 120.00128 * 173.58957 * 17 15 14 20 20 H 1.48500 * 109.47014 * 90.00594 * 19 17 15 21 21 H 1.48497 * 109.46902 * 210.00051 * 19 17 15 22 22 H 1.48494 * 109.47083 * 330.00365 * 19 17 15 23 23 C 1.52998 * 117.49983 * 279.37743 * 14 13 12 24 24 C 1.53008 * 117.49631 * 210.72307 * 14 13 12 25 25 H 1.09007 * 109.46926 * 300.00061 * 1 2 3 26 26 H 1.08996 * 109.47626 * 60.00102 * 1 2 3 27 27 H 1.08999 * 109.47352 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46912 * 239.99600 * 2 1 3 29 29 H 1.08996 * 109.46888 * 119.99990 * 2 1 3 30 30 H 1.07995 * 120.02833 * 359.97438 * 4 3 2 31 31 H 1.09001 * 109.47419 * 59.99801 * 7 6 5 32 32 H 1.08996 * 109.46789 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.46667 * 299.99847 * 7 6 5 34 34 H 1.08004 * 120.02364 * 180.02562 * 8 5 4 35 35 H 1.08004 * 119.96705 * 180.31604 * 9 8 5 36 36 H 1.09005 * 109.47013 * 199.99497 * 11 10 3 37 37 H 1.09003 * 109.46823 * 319.98853 * 11 10 3 38 38 H 1.00892 * 111.00341 * 303.95969 * 12 11 10 39 39 H 1.08999 * 109.46990 * 305.35863 * 13 12 11 40 40 H 1.09000 * 109.46506 * 65.35350 * 13 12 11 41 41 H 0.97000 * 120.00233 * 179.97438 * 18 17 15 42 42 H 1.09000 * 117.49875 * 0.02562 * 23 14 13 43 43 H 1.09007 * 117.50079 * 145.02050 * 23 14 13 44 44 H 1.09005 * 117.49487 * 214.98119 * 24 14 13 45 45 H 1.08995 * 117.49467 * 359.97333 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3603 2.0369 -1.1924 5 6 2.8221 3.3449 -1.1918 6 8 3.1449 3.9533 -2.3633 7 6 3.6143 5.3009 -2.2867 8 6 2.9540 4.0310 0.0071 9 6 2.6194 3.4125 1.1959 10 6 2.1641 2.1068 1.1930 11 6 1.8056 1.4323 2.4921 12 7 2.9108 0.5608 2.9128 13 6 2.5962 -0.1144 4.1789 14 6 3.8172 -0.9057 4.6520 15 6 5.0251 -0.0812 5.0158 16 1 5.7989 0.0953 4.2834 17 6 5.1423 0.4477 6.2837 18 7 4.1460 0.3409 7.1354 19 14 6.7163 1.3160 6.7916 20 1 6.6109 2.7614 6.4676 21 1 6.9237 1.1502 8.2526 22 1 7.8653 0.7269 6.0584 23 6 4.0623 -2.2746 4.0142 24 6 3.5635 -2.1811 5.4583 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.2572 1.5006 -2.1241 31 1 4.5186 5.3368 -1.6792 32 1 3.8351 5.6662 -3.2896 33 1 2.8467 5.9278 -1.8329 34 1 3.3130 5.0497 0.0101 35 1 2.7170 3.9479 2.1287 36 1 1.6276 2.1883 3.2569 37 1 0.9041 0.8352 2.3547 38 1 3.1380 -0.1082 2.1926 39 1 2.3312 0.6288 4.9309 40 1 1.7579 -0.7947 4.0293 41 1 4.2285 0.7126 8.0275 42 1 3.3539 -2.6113 3.2573 43 1 5.0973 -2.5791 3.8580 44 1 4.2704 -2.4239 6.2516 45 1 2.5267 -2.4560 5.6520 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337263220.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:51 Heat of formation + Delta-G solvation = -12.328154 kcal Electronic energy + Delta-G solvation = -23022.885466 eV Core-core repulsion = 19812.339490 eV Total energy + Delta-G solvation = -3210.545976 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.24465 -39.36839 -38.51879 -35.75568 -34.68604 -33.87594 -31.81967 -30.37982 -28.50457 -27.68879 -26.70249 -25.00026 -24.23047 -22.92699 -22.62598 -21.34744 -20.82202 -18.62181 -18.14759 -17.54029 -16.87261 -16.62389 -16.45317 -15.96339 -15.61094 -15.42115 -15.24253 -14.87727 -14.73835 -14.45463 -14.17538 -13.89353 -13.66125 -13.25504 -13.16263 -12.91865 -12.87062 -12.84246 -12.57953 -12.51567 -12.32852 -12.12850 -12.00223 -11.80946 -11.70826 -11.53103 -11.29581 -10.71050 -10.35245 -9.90538 -9.72992 -9.14251 -8.88540 -8.02012 -6.07460 0.39361 0.47379 1.42306 1.43874 1.53028 2.38828 2.48821 2.72685 3.28019 3.43432 3.74334 3.81875 3.87331 4.03395 4.14956 4.22406 4.29828 4.39644 4.40251 4.45912 4.50726 4.53211 4.61548 4.69229 4.73408 4.76073 4.78018 4.81173 4.87805 5.01517 5.06646 5.08204 5.10205 5.18184 5.30755 5.35592 5.38989 5.49443 5.66622 5.76980 5.77733 5.85085 5.90398 6.37132 6.47975 6.53584 6.76545 6.95491 7.57360 9.07003 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015387 B = 0.004325 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.328141 B = 6473.008734 C = 7719.182240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 C -0.038 4.038 4 C -0.160 4.160 5 C 0.117 3.883 6 O -0.333 6.333 7 C 0.019 3.981 8 C -0.215 4.215 9 C -0.073 4.073 10 C -0.119 4.119 11 C 0.106 3.894 12 N -0.673 5.673 13 C 0.123 3.877 14 C 0.026 3.974 15 C -0.479 4.479 16 H 0.044 0.956 17 C 0.024 3.976 18 N -0.911 5.911 19 Si 0.941 3.059 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.272 1.272 23 C -0.189 4.189 24 C -0.165 4.165 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.141 0.859 31 H 0.058 0.942 32 H 0.121 0.879 33 H 0.063 0.937 34 H 0.144 0.856 35 H 0.124 0.876 36 H 0.061 0.939 37 H 0.044 0.956 38 H 0.336 0.664 39 H 0.042 0.958 40 H 0.009 0.991 41 H 0.256 0.744 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.056 0.944 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.653 5.563 -17.752 19.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 C -0.038 4.038 4 C -0.178 4.178 5 C 0.071 3.929 6 O -0.247 6.247 7 C -0.075 4.075 8 C -0.233 4.233 9 C -0.092 4.092 10 C -0.120 4.120 11 C -0.023 4.023 12 N -0.305 5.305 13 C -0.006 4.006 14 C 0.025 3.975 15 C -0.517 4.517 16 H 0.062 0.938 17 C -0.175 4.175 18 N -0.550 5.550 19 Si 0.768 3.232 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.226 4.226 24 C -0.203 4.203 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.082 0.918 30 H 0.158 0.842 31 H 0.077 0.923 32 H 0.139 0.861 33 H 0.082 0.918 34 H 0.162 0.838 35 H 0.142 0.858 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.155 0.845 39 H 0.061 0.939 40 H 0.027 0.973 41 H 0.064 0.936 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.362 6.052 -17.446 19.531 hybrid contribution 0.369 0.187 0.808 0.908 sum -5.993 6.239 -16.638 18.753 Atomic orbital electron populations 1.21725 0.93584 1.02584 1.02048 1.20640 0.97138 0.91439 1.03312 1.19674 0.96345 0.96431 0.91383 1.20393 1.05508 0.93122 0.98779 1.19116 0.95857 0.92855 0.85039 1.86021 1.80321 1.30011 1.28364 1.23314 0.99284 0.79483 1.05455 1.21354 1.08214 1.01956 0.91779 1.20983 0.95783 0.94459 0.97945 1.19639 1.03317 0.94805 0.94200 1.20775 0.92314 0.95931 0.93242 1.60245 1.39807 1.25570 1.04882 1.21198 0.94076 0.95063 0.90239 1.18912 0.94691 0.85738 0.98117 1.20518 1.03888 1.31171 0.96119 0.93758 1.25532 0.98406 0.96718 0.96866 1.70103 1.31720 1.46878 1.06322 0.85822 0.81344 0.78922 0.77077 1.20745 1.21123 1.19724 1.22974 1.00314 1.04227 0.95076 1.22432 0.98802 1.05876 0.93180 0.93336 0.91853 0.91017 0.89319 0.91773 0.84151 0.92317 0.86083 0.91804 0.83802 0.85816 0.92081 0.93828 0.84488 0.93947 0.97294 0.93551 0.89192 0.90793 0.92517 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.75 71.98 0.70 -2.04 16 2 C -0.09 -1.96 5.39 29.85 0.16 -1.80 16 3 C -0.04 -1.00 5.12 -19.88 -0.10 -1.10 16 4 C -0.16 -4.04 9.62 22.36 0.22 -3.83 16 5 C 0.12 2.99 6.69 22.51 0.15 3.14 16 6 O -0.33 -7.60 10.50 -92.36 -0.97 -8.57 16 7 C 0.02 0.27 9.81 113.37 1.11 1.39 16 8 C -0.21 -5.46 9.04 22.37 0.20 -5.26 16 9 C -0.07 -2.13 9.66 22.25 0.21 -1.91 16 10 C -0.12 -3.57 5.39 -19.85 -0.11 -3.68 16 11 C 0.11 3.48 5.06 85.56 0.43 3.91 16 12 N -0.67 -26.27 6.35 -517.94 -3.29 -29.56 16 13 C 0.12 5.46 5.51 86.30 0.48 5.94 16 14 C 0.03 1.27 1.55 -52.93 -0.08 1.19 16 15 C -0.48 -26.54 8.74 25.60 0.22 -26.31 16 16 H 0.04 2.52 7.82 -2.91 -0.02 2.50 16 17 C 0.02 1.32 5.39 84.66 0.46 1.78 16 18 N -0.91 -52.69 12.92 21.45 0.28 -52.42 16 19 Si 0.94 44.79 29.54 68.60 2.03 46.81 16 20 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 21 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 23 C -0.19 -7.94 9.96 30.62 0.30 -7.63 16 24 C -0.16 -7.72 9.41 30.62 0.29 -7.44 16 25 H 0.05 1.03 6.72 -2.38 -0.02 1.01 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.09 1.68 8.05 -2.39 -0.02 1.66 16 29 H 0.06 1.60 5.43 -2.39 -0.01 1.58 16 30 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 31 H 0.06 0.82 7.66 -2.39 -0.02 0.80 16 32 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 0.80 7.66 -2.39 -0.02 0.78 16 34 H 0.14 2.93 6.30 -2.91 -0.02 2.91 16 35 H 0.12 3.55 8.03 -2.91 -0.02 3.52 16 36 H 0.06 2.14 8.00 -2.38 -0.02 2.12 16 37 H 0.04 1.31 5.84 -2.39 -0.01 1.30 16 38 H 0.34 12.26 6.93 -89.70 -0.62 11.64 16 39 H 0.04 2.15 8.13 -2.39 -0.02 2.13 16 40 H 0.01 0.37 8.09 -2.39 -0.02 0.35 16 41 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 42 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 43 H 0.07 3.13 8.14 -2.38 -0.02 3.11 16 44 H 0.06 2.90 8.14 -2.38 -0.02 2.88 16 45 H 0.07 3.16 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -63.08 364.73 3.04 -60.04 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 0.35 Total: 27.34 kcal Atomic # 6 Polarization: -48.30 SS G_CDS: 4.65 Total: -43.65 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -3.01 Total: -81.98 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.97 Total: -8.57 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -63.08 3.04 -60.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337263220.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.715 kcal (2) G-P(sol) polarization free energy of solvation -63.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds