Wall clock time and date at job start Tue Mar 31 2020 06:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47069 * 2 1 4 4 C 1.53010 * 109.47360 * 240.00441 * 2 1 3 5 5 C 1.50694 * 109.46676 * 294.99908 * 4 2 1 6 6 C 1.38238 * 119.99702 * 269.72459 * 5 4 2 7 7 C 1.38241 * 119.99614 * 179.76551 * 6 5 4 8 8 C 1.38237 * 120.00302 * 0.49043 * 7 6 5 9 9 C 1.50694 * 120.00346 * 179.76549 * 8 7 6 10 10 C 1.52996 * 109.47324 * 270.01944 * 9 8 7 11 11 C 1.50701 * 109.47675 * 179.97438 * 10 9 8 12 12 O 1.21294 * 119.99585 * 0.02562 * 11 10 9 13 13 N 1.34767 * 120.00545 * 179.97438 * 11 10 9 14 14 C 1.46506 * 120.00032 * 0.02562 * 13 11 10 15 15 C 1.37094 * 120.00474 * 180.02562 * 13 11 10 16 16 H 1.08003 * 119.99861 * 22.40857 * 15 13 11 17 17 C 1.38948 * 120.00364 * 202.40922 * 15 13 11 18 18 N 1.31412 * 119.99931 * 11.59194 * 17 15 13 19 19 Si 1.86802 * 120.00107 * 191.59005 * 17 15 13 20 20 H 1.48502 * 109.46867 * 90.00271 * 19 17 15 21 21 H 1.48504 * 109.47185 * 210.00219 * 19 17 15 22 22 H 1.48495 * 109.47010 * 330.00289 * 19 17 15 23 23 C 1.38233 * 119.99480 * 359.78301 * 8 7 6 24 24 C 1.38233 * 120.00373 * 90.00017 * 5 4 2 25 25 H 1.09002 * 109.46886 * 60.00281 * 1 2 3 26 26 H 1.09002 * 109.46514 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47277 * 299.99472 * 1 2 3 28 28 H 1.08997 * 109.47552 * 120.00328 * 2 1 3 29 29 H 1.08996 * 109.46640 * 60.00138 * 3 2 1 30 30 H 1.08997 * 109.47105 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46733 * 300.00292 * 3 2 1 32 32 H 1.08996 * 109.47010 * 54.99524 * 4 2 1 33 33 H 1.08998 * 109.46806 * 174.99998 * 4 2 1 34 34 H 1.07995 * 120.00476 * 0.02562 * 6 5 4 35 35 H 1.08006 * 119.99936 * 180.24941 * 7 6 5 36 36 H 1.09005 * 109.47195 * 30.01757 * 9 8 7 37 37 H 1.08999 * 109.47211 * 150.01668 * 9 8 7 38 38 H 1.09000 * 109.47097 * 300.00437 * 10 9 8 39 39 H 1.09009 * 109.47196 * 59.99816 * 10 9 8 40 40 H 1.09001 * 109.47247 * 92.15414 * 14 13 11 41 41 H 1.08992 * 109.47482 * 212.15725 * 14 13 11 42 42 H 1.09006 * 109.46703 * 332.15868 * 14 13 11 43 43 H 0.96996 * 120.00061 * 179.97438 * 18 17 15 44 44 H 1.08007 * 119.99931 * 179.97438 * 23 8 7 45 45 H 1.08004 * 119.99537 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2494 5 6 1.6414 -2.1732 -1.1890 6 6 2.4841 -3.0974 -0.6002 7 6 2.1162 -4.4286 -0.5405 8 6 0.9102 -4.8373 -1.0787 9 6 0.5116 -6.2893 -1.0183 10 6 1.0216 -7.0105 -2.2675 11 6 0.6235 -8.4627 -2.2069 12 8 -0.0067 -8.8797 -1.2581 13 7 0.9666 -9.2979 -3.2074 14 6 1.7273 -8.7942 -4.3538 15 6 0.6040 -10.6189 -3.1526 16 1 -0.2299 -10.9249 -2.5382 17 6 1.3093 -11.5641 -3.8873 18 7 2.4518 -11.2401 -4.4500 19 14 0.6334 -13.2954 -4.0752 20 1 -0.2273 -13.3623 -5.2834 21 1 1.7591 -14.2537 -4.2156 22 1 -0.1688 -13.6464 -2.8759 23 6 0.0702 -3.9139 -1.6725 24 6 0.4357 -2.5819 -1.7275 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6054 -0.2617 -2.1370 33 1 3.1264 -0.6442 -1.2952 34 1 3.4279 -2.7788 -0.1831 35 1 2.7728 -5.1501 -0.0769 36 1 0.9462 -6.7488 -0.1306 37 1 -0.5747 -6.3662 -0.9724 38 1 0.5870 -6.5510 -3.1552 39 1 2.1080 -6.9336 -2.3135 40 1 2.7934 -8.9253 -4.1684 41 1 1.4435 -9.3469 -5.2493 42 1 1.5109 -7.7354 -4.4964 43 1 2.9443 -11.9000 -4.9626 44 1 -0.8719 -4.2332 -2.0933 45 1 -0.2209 -1.8604 -2.1911 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337633583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:39 Heat of formation + Delta-G solvation = -36.786965 kcal Electronic energy + Delta-G solvation = -22206.426109 eV Core-core repulsion = 18994.819519 eV Total energy + Delta-G solvation = -3211.606590 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.68050 -38.40179 -36.59293 -34.72757 -33.37492 -31.58490 -30.85741 -30.09533 -27.40326 -26.96091 -26.01776 -24.52326 -22.95207 -22.61429 -20.74494 -20.06627 -18.61636 -16.84630 -16.40392 -15.91866 -15.58296 -15.03216 -14.84958 -14.54216 -14.40902 -14.28584 -14.05044 -13.52011 -13.32864 -12.89788 -12.77612 -12.51938 -12.34980 -12.29296 -11.94651 -11.64970 -11.46460 -11.39414 -11.26564 -11.12592 -11.06648 -10.94287 -10.83065 -10.79596 -10.58377 -10.44227 -10.31654 -10.16187 -8.99328 -8.80858 -8.49585 -8.20441 -7.63982 -6.27151 -3.83801 1.43242 1.50314 3.18502 3.26751 3.32621 3.81317 3.96110 4.17635 4.56897 4.61686 4.73189 4.86695 4.93483 5.08133 5.11965 5.16299 5.26320 5.27133 5.37869 5.42771 5.56082 5.60138 5.61124 5.66387 5.70972 5.72045 5.80828 5.84292 5.93591 6.06137 6.08703 6.11749 6.17795 6.21418 6.39143 6.47065 6.55156 6.64482 6.66916 6.88138 6.93278 7.12907 7.26823 7.60204 8.17887 8.53354 9.23569 9.48289 10.04381 10.76554 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.046490 B = 0.002530 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.136601 B =11065.688820 C =11273.790503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.147 4.147 4 C -0.074 4.074 5 C -0.093 4.093 6 C -0.117 4.117 7 C -0.115 4.115 8 C -0.073 4.073 9 C -0.063 4.063 10 C -0.121 4.121 11 C 0.445 3.555 12 O -0.593 6.593 13 N -0.450 5.450 14 C 0.113 3.887 15 C -0.305 4.305 16 H 0.098 0.902 17 C 0.028 3.972 18 N -0.885 5.885 19 Si 0.926 3.074 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.269 1.269 23 C -0.117 4.117 24 C -0.115 4.115 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.026 0.974 43 H 0.266 0.734 44 H 0.121 0.879 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.625 22.012 3.776 22.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.111 4.111 5 C -0.093 4.093 6 C -0.135 4.135 7 C -0.133 4.133 8 C -0.073 4.073 9 C -0.101 4.101 10 C -0.161 4.161 11 C 0.234 3.766 12 O -0.478 6.478 13 N -0.169 5.169 14 C -0.031 4.031 15 C -0.433 4.433 16 H 0.116 0.884 17 C -0.175 4.175 18 N -0.525 5.525 19 Si 0.753 3.247 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.194 1.194 23 C -0.135 4.135 24 C -0.133 4.133 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.045 0.955 43 H 0.077 0.923 44 H 0.139 0.861 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.468 21.688 4.093 22.076 hybrid contribution -0.028 -0.911 -0.380 0.987 sum 0.441 20.777 3.712 21.111 Atomic orbital electron populations 1.21920 0.95163 1.02382 1.01327 1.21089 0.96180 0.95653 0.98098 1.21856 1.00886 0.96026 1.01707 1.20646 1.00900 0.91419 0.98155 1.19759 0.94973 0.95187 0.99351 1.20969 0.99354 0.93048 1.00112 1.21095 0.96380 0.95768 1.00038 1.20101 0.94281 0.96108 0.96855 1.20325 1.01995 0.89101 0.98651 1.21489 1.01780 0.94564 0.98296 1.20108 0.85446 0.87684 0.83399 1.90503 1.44869 1.78304 1.34164 1.43621 1.48127 1.08520 1.16589 1.21494 0.96817 0.94395 0.90353 1.19669 1.13746 0.81794 1.28058 0.88429 1.25345 0.94797 0.99939 0.97385 1.70003 1.12620 1.35464 1.34405 0.85919 0.78325 0.81582 0.78836 1.20427 1.20979 1.19395 1.21082 0.99836 0.92872 0.99666 1.20966 0.96276 0.95701 1.00353 0.92868 0.91912 0.93031 0.91146 0.92747 0.92743 0.92716 0.91233 0.91238 0.86528 0.86072 0.90513 0.90585 0.90624 0.90420 0.92472 0.91403 0.95501 0.92343 0.86138 0.86515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.76 37.16 0.33 -0.86 16 2 C -0.09 -0.71 2.91 -90.61 -0.26 -0.98 16 3 C -0.15 -0.95 9.19 37.16 0.34 -0.61 16 4 C -0.07 -0.62 4.84 -27.88 -0.14 -0.76 16 5 C -0.09 -1.00 4.71 -104.63 -0.49 -1.49 16 6 C -0.12 -1.35 9.70 -39.58 -0.38 -1.73 16 7 C -0.11 -1.51 9.70 -39.58 -0.38 -1.89 16 8 C -0.07 -1.04 5.13 -104.63 -0.54 -1.58 16 9 C -0.06 -1.06 4.63 -27.89 -0.13 -1.18 16 10 C -0.12 -2.26 4.20 -27.88 -0.12 -2.37 16 11 C 0.45 11.02 7.63 -10.99 -0.08 10.93 16 12 O -0.59 -16.62 15.67 5.55 0.09 -16.53 16 13 N -0.45 -11.81 3.02 -122.19 -0.37 -12.18 16 14 C 0.11 2.59 8.52 59.85 0.51 3.10 16 15 C -0.30 -8.68 9.29 -14.94 -0.14 -8.82 16 16 H 0.10 2.91 7.41 -52.48 -0.39 2.52 16 17 C 0.03 0.75 5.11 -17.47 -0.09 0.66 16 18 N -0.89 -24.01 10.62 55.50 0.59 -23.42 16 19 Si 0.93 21.12 29.57 -169.99 -5.03 16.09 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 C -0.12 -1.50 9.70 -39.58 -0.38 -1.88 16 24 C -0.11 -1.29 7.96 -39.58 -0.32 -1.61 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.57 6.26 -51.93 -0.33 0.25 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.07 0.54 8.08 -51.93 -0.42 0.13 16 34 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.12 1.51 8.06 -52.48 -0.42 1.08 16 36 H 0.08 1.35 8.04 -51.93 -0.42 0.94 16 37 H 0.08 1.32 8.04 -51.93 -0.42 0.90 16 38 H 0.08 1.29 7.40 -51.93 -0.38 0.91 16 39 H 0.08 1.38 8.11 -51.92 -0.42 0.96 16 40 H 0.06 1.35 7.54 -51.93 -0.39 0.96 16 41 H 0.07 1.62 7.06 -51.93 -0.37 1.26 16 42 H 0.03 0.51 6.36 -51.93 -0.33 0.18 16 43 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 44 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 45 H 0.12 1.10 8.04 -52.48 -0.42 0.68 16 LS Contribution 363.98 15.07 5.49 5.49 Total: -1.00 -31.11 363.98 -9.16 -40.27 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.64 Total: 1.36 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -2.28 Total: -11.07 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.22 Total: -35.61 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: 0.09 Total: -16.53 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.11 -9.16 -40.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337633583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.483 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds