Wall clock time and date at job start Tue Mar 31 2020 06:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47069 * 2 1 4 4 C 1.53010 * 109.47360 * 240.00441 * 2 1 3 5 5 C 1.50694 * 109.46676 * 294.99908 * 4 2 1 6 6 C 1.38238 * 119.99702 * 269.72459 * 5 4 2 7 7 C 1.38241 * 119.99614 * 179.76551 * 6 5 4 8 8 C 1.38237 * 120.00302 * 0.49043 * 7 6 5 9 9 C 1.50694 * 120.00346 * 179.76549 * 8 7 6 10 10 C 1.52996 * 109.47324 * 270.01944 * 9 8 7 11 11 C 1.50701 * 109.47675 * 179.97438 * 10 9 8 12 12 O 1.21294 * 119.99585 * 0.02562 * 11 10 9 13 13 N 1.34767 * 120.00545 * 179.97438 * 11 10 9 14 14 C 1.46506 * 120.00032 * 0.02562 * 13 11 10 15 15 C 1.37094 * 120.00474 * 180.02562 * 13 11 10 16 16 H 1.08003 * 119.99861 * 22.40857 * 15 13 11 17 17 C 1.38948 * 120.00364 * 202.40922 * 15 13 11 18 18 N 1.31412 * 119.99931 * 11.59194 * 17 15 13 19 19 Si 1.86802 * 120.00107 * 191.59005 * 17 15 13 20 20 H 1.48502 * 109.46867 * 90.00271 * 19 17 15 21 21 H 1.48504 * 109.47185 * 210.00219 * 19 17 15 22 22 H 1.48495 * 109.47010 * 330.00289 * 19 17 15 23 23 C 1.38233 * 119.99480 * 359.78301 * 8 7 6 24 24 C 1.38233 * 120.00373 * 90.00017 * 5 4 2 25 25 H 1.09002 * 109.46886 * 60.00281 * 1 2 3 26 26 H 1.09002 * 109.46514 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47277 * 299.99472 * 1 2 3 28 28 H 1.08997 * 109.47552 * 120.00328 * 2 1 3 29 29 H 1.08996 * 109.46640 * 60.00138 * 3 2 1 30 30 H 1.08997 * 109.47105 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46733 * 300.00292 * 3 2 1 32 32 H 1.08996 * 109.47010 * 54.99524 * 4 2 1 33 33 H 1.08998 * 109.46806 * 174.99998 * 4 2 1 34 34 H 1.07995 * 120.00476 * 0.02562 * 6 5 4 35 35 H 1.08006 * 119.99936 * 180.24941 * 7 6 5 36 36 H 1.09005 * 109.47195 * 30.01757 * 9 8 7 37 37 H 1.08999 * 109.47211 * 150.01668 * 9 8 7 38 38 H 1.09000 * 109.47097 * 300.00437 * 10 9 8 39 39 H 1.09009 * 109.47196 * 59.99816 * 10 9 8 40 40 H 1.09001 * 109.47247 * 92.15414 * 14 13 11 41 41 H 1.08992 * 109.47482 * 212.15725 * 14 13 11 42 42 H 1.09006 * 109.46703 * 332.15868 * 14 13 11 43 43 H 0.96996 * 120.00061 * 179.97438 * 18 17 15 44 44 H 1.08007 * 119.99931 * 179.97438 * 23 8 7 45 45 H 1.08004 * 119.99537 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2494 5 6 1.6414 -2.1732 -1.1890 6 6 2.4841 -3.0974 -0.6002 7 6 2.1162 -4.4286 -0.5405 8 6 0.9102 -4.8373 -1.0787 9 6 0.5116 -6.2893 -1.0183 10 6 1.0216 -7.0105 -2.2675 11 6 0.6235 -8.4627 -2.2069 12 8 -0.0067 -8.8797 -1.2581 13 7 0.9666 -9.2979 -3.2074 14 6 1.7273 -8.7942 -4.3538 15 6 0.6040 -10.6189 -3.1526 16 1 -0.2299 -10.9249 -2.5382 17 6 1.3093 -11.5641 -3.8873 18 7 2.4518 -11.2401 -4.4500 19 14 0.6334 -13.2954 -4.0752 20 1 -0.2273 -13.3623 -5.2834 21 1 1.7591 -14.2537 -4.2156 22 1 -0.1688 -13.6464 -2.8759 23 6 0.0702 -3.9139 -1.6725 24 6 0.4357 -2.5819 -1.7275 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6054 -0.2617 -2.1370 33 1 3.1264 -0.6442 -1.2952 34 1 3.4279 -2.7788 -0.1831 35 1 2.7728 -5.1501 -0.0769 36 1 0.9462 -6.7488 -0.1306 37 1 -0.5747 -6.3662 -0.9724 38 1 0.5870 -6.5510 -3.1552 39 1 2.1080 -6.9336 -2.3135 40 1 2.7934 -8.9253 -4.1684 41 1 1.4435 -9.3469 -5.2493 42 1 1.5109 -7.7354 -4.4964 43 1 2.9443 -11.9000 -4.9626 44 1 -0.8719 -4.2332 -2.0933 45 1 -0.2209 -1.8604 -2.1911 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337633583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:39 Heat of formation + Delta-G solvation = -51.642432 kcal Electronic energy + Delta-G solvation = -22207.070290 eV Core-core repulsion = 18994.819519 eV Total energy + Delta-G solvation = -3212.250771 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.75671 -40.17016 -37.39982 -36.68747 -34.61977 -33.60431 -31.78231 -31.24329 -28.49074 -27.95921 -27.54050 -26.22416 -24.33097 -23.54595 -21.72463 -20.76277 -20.45428 -18.90268 -17.99747 -17.04349 -16.75173 -16.56840 -16.09817 -15.90800 -15.79912 -15.40067 -15.14429 -14.52708 -14.47429 -14.24047 -14.08365 -13.67212 -13.52773 -13.26582 -13.14952 -13.06211 -12.96263 -12.75946 -12.66034 -12.57754 -12.32381 -12.20965 -12.11186 -12.03164 -11.70678 -11.61240 -11.45560 -11.42550 -11.02762 -10.37363 -9.74040 -9.70515 -9.31212 -8.33376 -5.99400 0.47053 0.56991 1.36516 1.39538 1.52252 2.02874 2.27278 2.84658 3.08504 3.13369 3.80846 3.91233 3.95241 4.06758 4.14137 4.21017 4.24181 4.27415 4.38254 4.44272 4.53422 4.62117 4.66246 4.81967 4.82652 4.85368 4.88834 4.98309 5.00128 5.06359 5.10645 5.11053 5.17341 5.26682 5.28440 5.37690 5.39161 5.43632 5.47601 5.51998 5.60568 5.80217 5.83231 6.08955 6.19418 6.47864 7.16192 7.47412 8.03360 8.68326 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.046490 B = 0.002530 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.136601 B =11065.688820 C =11273.790503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.145 4.145 4 C -0.072 4.072 5 C -0.087 4.087 6 C -0.120 4.120 7 C -0.126 4.126 8 C -0.091 4.091 9 C -0.052 4.052 10 C -0.106 4.106 11 C 0.434 3.566 12 O -0.636 6.636 13 N -0.467 5.467 14 C 0.123 3.877 15 C -0.345 4.345 16 H 0.070 0.930 17 C -0.005 4.005 18 N -0.898 5.898 19 Si 0.991 3.009 20 H -0.265 1.265 21 H -0.272 1.272 22 H -0.277 1.277 23 C -0.124 4.124 24 C -0.115 4.115 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.136 0.864 35 H 0.121 0.879 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.046 0.954 41 H 0.052 0.948 42 H 0.068 0.932 43 H 0.273 0.727 44 H 0.125 0.875 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.263 24.011 2.852 24.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.108 4.108 3 C -0.202 4.202 4 C -0.109 4.109 5 C -0.087 4.087 6 C -0.138 4.138 7 C -0.144 4.144 8 C -0.091 4.091 9 C -0.090 4.090 10 C -0.146 4.146 11 C 0.224 3.776 12 O -0.524 6.524 13 N -0.186 5.186 14 C -0.020 4.020 15 C -0.473 4.473 16 H 0.088 0.912 17 C -0.207 4.207 18 N -0.537 5.537 19 Si 0.815 3.185 20 H -0.190 1.190 21 H -0.197 1.197 22 H -0.202 1.202 23 C -0.142 4.142 24 C -0.132 4.132 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.154 0.846 35 H 0.139 0.861 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.143 0.857 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.129 23.711 3.145 23.945 hybrid contribution -0.206 -1.461 -0.060 1.477 sum 0.923 22.250 3.085 22.481 Atomic orbital electron populations 1.21920 0.95331 1.01595 1.01961 1.21064 0.96008 0.96397 0.97376 1.21827 1.01204 0.95004 1.02158 1.20695 1.01623 0.89722 0.98849 1.20090 0.94400 0.96419 0.97798 1.21213 1.00304 0.92388 0.99928 1.21195 0.96135 0.96782 1.00265 1.19857 0.95499 0.94550 0.99182 1.20136 1.00971 0.90909 0.96987 1.21422 1.02582 0.90300 1.00251 1.21166 0.84148 0.89906 0.82333 1.90463 1.46533 1.79678 1.35703 1.43922 1.48504 1.08248 1.17908 1.21440 0.95592 0.96437 0.88520 1.19628 1.14364 0.83713 1.29607 0.91173 1.26123 0.94828 1.03430 0.96307 1.70075 1.12878 1.36799 1.33932 0.84969 0.77988 0.76829 0.78756 1.18964 1.19720 1.20164 1.21207 0.99880 0.93486 0.99659 1.21204 0.96736 0.95305 0.99997 0.92020 0.93334 0.92709 0.92009 0.92461 0.92248 0.92143 0.90230 0.90290 0.84600 0.86098 0.92275 0.91801 0.88396 0.89122 0.93586 0.92912 0.91382 0.91706 0.85678 0.84480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.76 71.98 0.63 -1.43 16 2 C -0.09 -1.17 2.91 -10.79 -0.03 -1.21 16 3 C -0.14 -1.47 9.19 71.99 0.66 -0.81 16 4 C -0.07 -0.99 4.84 29.85 0.14 -0.85 16 5 C -0.09 -1.67 4.71 -19.87 -0.09 -1.76 16 6 C -0.12 -2.54 9.70 22.27 0.22 -2.32 16 7 C -0.13 -3.20 9.70 22.27 0.22 -2.98 16 8 C -0.09 -2.53 5.13 -19.87 -0.10 -2.63 16 9 C -0.05 -1.78 4.63 29.84 0.14 -1.64 16 10 C -0.11 -3.90 4.20 29.85 0.13 -3.78 16 11 C 0.43 22.00 7.63 87.66 0.67 22.67 16 12 O -0.64 -37.16 15.67 -3.07 -0.05 -37.21 16 13 N -0.47 -25.02 3.02 -658.89 -1.99 -27.01 16 14 C 0.12 5.59 8.52 127.77 1.09 6.68 16 15 C -0.35 -20.26 9.29 84.04 0.78 -19.48 16 16 H 0.07 4.40 7.41 -2.91 -0.02 4.38 16 17 C -0.01 -0.30 5.11 84.93 0.43 0.14 16 18 N -0.90 -48.59 10.62 21.66 0.23 -48.36 16 19 Si 0.99 43.43 29.57 68.60 2.03 45.46 16 20 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 23 C -0.12 -3.04 9.70 22.27 0.22 -2.83 16 24 C -0.11 -2.33 7.96 22.27 0.18 -2.15 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.05 0.80 6.26 -2.39 -0.01 0.78 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 33 H 0.08 0.97 8.08 -2.39 -0.02 0.95 16 34 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 35 H 0.12 2.98 8.06 -2.91 -0.02 2.95 16 36 H 0.06 2.18 8.04 -2.38 -0.02 2.16 16 37 H 0.06 2.28 8.04 -2.39 -0.02 2.26 16 38 H 0.10 3.19 7.40 -2.39 -0.02 3.17 16 39 H 0.09 3.13 8.11 -2.38 -0.02 3.12 16 40 H 0.05 2.17 7.54 -2.39 -0.02 2.15 16 41 H 0.05 2.52 7.06 -2.39 -0.02 2.50 16 42 H 0.07 2.47 6.36 -2.38 -0.02 2.45 16 43 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 44 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 45 H 0.14 2.19 8.04 -2.91 -0.02 2.16 16 Total: -1.00 -68.49 363.98 6.43 -62.06 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.94 Total: 19.44 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: 5.27 Total: -14.38 kcal Atomic # 7 Polarization: -73.61 SS G_CDS: -1.76 Total: -75.37 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -0.05 Total: -37.21 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -68.49 6.43 -62.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337633583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.417 kcal (2) G-P(sol) polarization free energy of solvation -68.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds