Wall clock time and date at job start Tue Mar 31 2020 05:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 115.55774 * 2 1 4 4 C 1.52999 * 117.49673 * 214.31120 * 2 1 3 5 5 C 1.52998 * 117.49890 * 145.68426 * 2 1 3 6 6 H 1.08997 * 117.49939 * 214.99741 * 5 2 1 7 7 N 1.46905 * 117.49952 * 0.02562 * 5 2 1 8 8 C 1.46901 * 110.99798 * 204.99537 * 7 5 2 9 9 C 1.50694 * 109.46883 * 179.97438 * 8 7 5 10 10 C 1.38290 * 119.97270 * 90.00276 * 9 8 7 11 11 C 1.38241 * 120.11289 * 180.02562 * 10 9 8 12 12 C 1.38161 * 120.05647 * 359.97438 * 11 10 9 13 13 C 1.38708 * 119.94442 * 0.02562 * 12 11 10 14 14 O 1.35905 * 120.05630 * 179.97438 * 13 12 11 15 15 C 1.42905 * 116.99842 * 0.02562 * 14 13 12 16 16 C 1.52999 * 109.46728 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46573 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00167 * 359.72054 * 17 16 15 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99350 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00608 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47353 * 89.99430 * 21 19 17 23 23 H 1.48494 * 109.47031 * 209.99977 * 21 19 17 24 24 H 1.48504 * 109.46680 * 329.99678 * 21 19 17 25 25 C 1.38123 * 119.97389 * 270.25439 * 9 8 7 26 26 H 1.09005 * 109.46836 * 274.31460 * 1 2 3 27 27 H 1.09000 * 109.47284 * 34.31018 * 1 2 3 28 28 H 1.08999 * 109.46844 * 154.31633 * 1 2 3 29 29 H 1.09005 * 109.46758 * 205.68844 * 3 2 1 30 30 H 1.09001 * 109.47436 * 325.68349 * 3 2 1 31 31 H 1.09000 * 109.47298 * 85.69242 * 3 2 1 32 32 H 1.08994 * 117.49679 * 145.02038 * 4 2 1 33 33 H 1.08997 * 117.50022 * 359.97438 * 4 2 1 34 34 H 1.00898 * 110.99771 * 328.94303 * 7 5 2 35 35 H 1.09002 * 109.46878 * 59.99323 * 8 7 5 36 36 H 1.08996 * 109.46943 * 299.99752 * 8 7 5 37 37 H 1.08002 * 119.93965 * 359.97438 * 10 9 8 38 38 H 1.08004 * 119.97058 * 179.97438 * 11 10 9 39 39 H 1.08006 * 120.02685 * 179.97438 * 12 11 10 40 40 H 1.09000 * 109.47187 * 59.99782 * 15 14 13 41 41 H 1.09001 * 109.46558 * 299.99735 * 15 14 13 42 42 H 1.09000 * 109.47486 * 59.99938 * 16 15 14 43 43 H 1.09001 * 109.47362 * 299.99215 * 16 15 14 44 44 H 0.97005 * 119.99656 * 180.02562 * 20 19 17 45 45 H 1.07997 * 120.02853 * 0.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2364 -1.1210 -0.7650 5 6 2.2365 -1.1209 0.7651 6 1 3.1714 -0.8750 1.2686 7 7 1.3938 -2.1151 1.4430 8 6 2.1099 -2.7335 2.5668 9 6 1.2157 -3.7449 3.2365 10 6 1.2205 -5.0606 2.8105 11 6 0.4010 -5.9907 3.4225 12 6 -0.4247 -5.6078 4.4620 13 6 -0.4313 -4.2888 4.8911 14 8 -1.2430 -3.9095 5.9130 15 6 -2.0630 -4.9220 6.5002 16 6 -2.9013 -4.3107 7.6247 17 6 -3.7665 -5.3782 8.2434 18 1 -3.7262 -6.3903 7.8688 19 6 -4.6134 -5.0616 9.2843 20 7 -5.3689 -5.9931 9.8239 21 14 -4.6890 -3.3093 9.9272 22 1 -5.7260 -2.5525 9.1809 23 1 -5.0321 -3.3265 11.3718 24 1 -3.3686 -2.6561 9.7398 25 6 0.3883 -3.3560 4.2718 26 1 -0.3633 0.0773 1.0248 27 1 -0.3634 0.8488 -0.5793 28 1 -0.3633 -0.9261 -0.4454 29 1 3.1824 1.3084 -0.4455 30 1 1.5812 2.0743 -0.5794 31 1 2.2772 1.7414 1.0248 32 1 3.1715 -0.8752 -1.2683 33 1 1.6112 -1.8587 -1.2679 34 1 0.5253 -1.7037 1.7502 35 1 2.3905 -1.9642 3.2862 36 1 3.0071 -3.2298 2.1969 37 1 1.8649 -5.3617 1.9979 38 1 0.4063 -7.0175 3.0877 39 1 -1.0650 -6.3348 4.9394 40 1 -1.4307 -5.7117 6.9059 41 1 -2.7240 -5.3398 5.7407 42 1 -3.5336 -3.5211 7.2185 43 1 -2.2407 -3.8925 8.3842 44 1 -5.9650 -5.7703 10.5560 45 1 0.3816 -2.3275 4.6012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338959019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:41 Heat of formation + Delta-G solvation = -5.507249 kcal Electronic energy + Delta-G solvation = -21784.856112 eV Core-core repulsion = 18574.605913 eV Total energy + Delta-G solvation = -3210.250200 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.93250 -39.07426 -37.45867 -34.53348 -33.34557 -31.17318 -30.81793 -29.43388 -28.89275 -27.83710 -25.63584 -24.76160 -22.35545 -21.60985 -21.44020 -20.18381 -19.31603 -17.72284 -16.70057 -16.14077 -15.82957 -15.69206 -15.43562 -15.41733 -14.61058 -14.25886 -14.12369 -13.80827 -13.45914 -13.32392 -13.06890 -12.81440 -12.75877 -12.56105 -12.44245 -12.28515 -11.89656 -11.61220 -11.50549 -11.46014 -11.37396 -10.83461 -10.81608 -10.61539 -10.19910 -10.01659 -9.91342 -9.83151 -9.36197 -8.83587 -8.63923 -8.48750 -7.91090 -6.15047 -4.16010 1.37720 1.64020 3.27161 3.34439 3.39714 3.41679 3.61435 3.75292 4.07903 4.37549 4.41485 4.52945 4.73470 4.76883 4.82321 4.97258 5.12738 5.19014 5.20509 5.28326 5.29072 5.39923 5.45782 5.49606 5.58483 5.59478 5.60498 5.62347 5.73530 5.77252 5.84763 5.90490 5.94553 6.03775 6.12349 6.39932 6.49130 6.61837 6.65785 6.76961 6.88238 7.08036 7.09559 7.21172 7.60817 7.90154 8.37153 8.85648 9.45169 10.97454 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.002680 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.267824 B =10444.518664 C =11442.549998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.142 4.142 3 C -0.115 4.115 4 C -0.161 4.161 5 C 0.023 3.977 6 H 0.099 0.901 7 N -0.653 5.653 8 C 0.104 3.896 9 C -0.053 4.053 10 C -0.146 4.146 11 C -0.081 4.081 12 C -0.208 4.208 13 C 0.144 3.856 14 O -0.321 6.321 15 C 0.073 3.927 16 C -0.009 4.009 17 C -0.527 4.527 18 H 0.074 0.926 19 C 0.072 3.928 20 N -0.897 5.897 21 Si 0.881 3.119 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.263 1.263 25 C -0.156 4.156 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.347 0.653 35 H 0.041 0.959 36 H 0.082 0.918 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.131 0.869 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.023 0.977 43 H 0.027 0.973 44 H 0.266 0.734 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.887 10.059 -20.062 28.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.144 4.144 3 C -0.172 4.172 4 C -0.199 4.199 5 C -0.088 4.088 6 H 0.116 0.884 7 N -0.284 5.284 8 C -0.024 4.024 9 C -0.054 4.054 10 C -0.165 4.165 11 C -0.099 4.099 12 C -0.227 4.227 13 C 0.097 3.903 14 O -0.234 6.234 15 C -0.001 4.001 16 C -0.046 4.046 17 C -0.565 4.565 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.535 5.535 21 Si 0.708 3.292 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.188 1.188 25 C -0.175 4.175 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.168 0.832 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.149 0.851 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.041 0.959 43 H 0.046 0.954 44 H 0.076 0.924 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 16.857 9.701 -20.232 28.064 hybrid contribution -0.272 1.167 1.070 1.606 sum 16.585 10.868 -19.162 27.575 Atomic orbital electron populations 1.21278 0.91797 1.02403 1.01857 1.21903 0.95354 0.91319 1.05789 1.21365 0.99921 0.94157 1.01798 1.23413 1.01885 1.00311 0.94265 1.22540 0.97776 0.94740 0.93728 0.88354 1.60259 1.06743 1.32630 1.28782 1.20876 0.95650 0.94959 0.90900 1.19383 0.96611 0.94422 0.94935 1.20786 1.01730 0.92716 1.01277 1.20920 0.94845 0.99291 0.94843 1.21421 1.04075 0.95824 1.01374 1.19090 0.90484 0.92575 0.88168 1.86117 1.52089 1.40045 1.45165 1.23079 0.91530 0.89617 0.95916 1.19585 0.94758 0.97679 0.92597 1.20839 1.22158 0.96180 1.17301 0.90740 1.24939 0.94741 0.97432 0.95929 1.69896 1.25326 1.33181 1.25134 0.86752 0.79210 0.85120 0.78148 1.20053 1.21166 1.18774 1.20257 0.99142 0.99161 0.98944 0.92374 0.92089 0.91718 0.92496 0.92032 0.92391 0.89033 0.88300 0.83237 0.94113 0.89949 0.86269 0.86032 0.85114 0.92496 0.92521 0.95874 0.95432 0.92439 0.85864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 8.79 37.16 0.33 -0.57 16 2 C -0.14 -1.08 2.70 -154.51 -0.42 -1.50 16 3 C -0.12 -0.73 9.85 37.16 0.37 -0.37 16 4 C -0.16 -1.24 9.75 -26.73 -0.26 -1.50 16 5 C 0.02 0.19 5.96 -67.71 -0.40 -0.21 16 6 H 0.10 0.77 7.90 -51.93 -0.41 0.36 16 7 N -0.65 -6.31 6.55 -107.99 -0.71 -7.02 16 8 C 0.10 1.03 5.66 -4.98 -0.03 1.00 16 9 C -0.05 -0.65 5.39 -104.65 -0.56 -1.21 16 10 C -0.15 -1.78 9.70 -39.56 -0.38 -2.16 16 11 C -0.08 -1.05 10.04 -39.61 -0.40 -1.44 16 12 C -0.21 -3.19 9.04 -39.44 -0.36 -3.55 16 13 C 0.14 2.41 6.69 -39.22 -0.26 2.15 16 14 O -0.32 -6.28 10.14 -19.44 -0.20 -6.48 16 15 C 0.07 1.50 4.68 37.16 0.17 1.67 16 16 C -0.01 -0.21 4.41 -27.88 -0.12 -0.33 16 17 C -0.53 -14.84 9.66 -34.44 -0.33 -15.17 16 18 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 19 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 20 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 21 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 25 C -0.16 -2.24 9.64 -39.43 -0.38 -2.62 16 26 H 0.06 0.46 7.59 -51.93 -0.39 0.07 16 27 H 0.06 0.42 7.92 -51.93 -0.41 0.01 16 28 H 0.06 0.54 7.90 -51.93 -0.41 0.13 16 29 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 30 H 0.06 0.36 7.92 -51.93 -0.41 -0.05 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.61 8.05 -51.93 -0.42 0.19 16 33 H 0.10 0.84 8.05 -51.93 -0.42 0.42 16 34 H 0.35 3.48 7.19 -39.29 -0.28 3.20 16 35 H 0.04 0.38 8.09 -51.93 -0.42 -0.04 16 36 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 39 H 0.13 1.99 6.30 -52.48 -0.33 1.66 16 40 H 0.06 1.13 7.66 -51.93 -0.40 0.74 16 41 H 0.06 1.13 7.66 -51.93 -0.40 0.73 16 42 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 43 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 44 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 367.89 15.07 5.54 5.54 Total: -1.00 -30.06 367.89 -9.97 -40.03 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.58 Total: 1.36 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -3.14 Total: -23.86 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.07 Total: -33.48 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.20 Total: -6.48 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.06 -9.97 -40.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338959019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.522 kcal (2) G-P(sol) polarization free energy of solvation -30.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds