Wall clock time and date at job start Tue Mar 31 2020 05:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 115.55774 * 2 1 4 4 C 1.52999 * 117.49673 * 214.31120 * 2 1 3 5 5 C 1.52998 * 117.49890 * 145.68426 * 2 1 3 6 6 H 1.08997 * 117.49939 * 214.99741 * 5 2 1 7 7 N 1.46905 * 117.49952 * 0.02562 * 5 2 1 8 8 C 1.46901 * 110.99798 * 204.99537 * 7 5 2 9 9 C 1.50694 * 109.46883 * 179.97438 * 8 7 5 10 10 C 1.38290 * 119.97270 * 90.00276 * 9 8 7 11 11 C 1.38241 * 120.11289 * 180.02562 * 10 9 8 12 12 C 1.38161 * 120.05647 * 359.97438 * 11 10 9 13 13 C 1.38708 * 119.94442 * 0.02562 * 12 11 10 14 14 O 1.35905 * 120.05630 * 179.97438 * 13 12 11 15 15 C 1.42905 * 116.99842 * 0.02562 * 14 13 12 16 16 C 1.52999 * 109.46728 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46573 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00167 * 359.72054 * 17 16 15 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99350 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00608 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47353 * 89.99430 * 21 19 17 23 23 H 1.48494 * 109.47031 * 209.99977 * 21 19 17 24 24 H 1.48504 * 109.46680 * 329.99678 * 21 19 17 25 25 C 1.38123 * 119.97389 * 270.25439 * 9 8 7 26 26 H 1.09005 * 109.46836 * 274.31460 * 1 2 3 27 27 H 1.09000 * 109.47284 * 34.31018 * 1 2 3 28 28 H 1.08999 * 109.46844 * 154.31633 * 1 2 3 29 29 H 1.09005 * 109.46758 * 205.68844 * 3 2 1 30 30 H 1.09001 * 109.47436 * 325.68349 * 3 2 1 31 31 H 1.09000 * 109.47298 * 85.69242 * 3 2 1 32 32 H 1.08994 * 117.49679 * 145.02038 * 4 2 1 33 33 H 1.08997 * 117.50022 * 359.97438 * 4 2 1 34 34 H 1.00898 * 110.99771 * 328.94303 * 7 5 2 35 35 H 1.09002 * 109.46878 * 59.99323 * 8 7 5 36 36 H 1.08996 * 109.46943 * 299.99752 * 8 7 5 37 37 H 1.08002 * 119.93965 * 359.97438 * 10 9 8 38 38 H 1.08004 * 119.97058 * 179.97438 * 11 10 9 39 39 H 1.08006 * 120.02685 * 179.97438 * 12 11 10 40 40 H 1.09000 * 109.47187 * 59.99782 * 15 14 13 41 41 H 1.09001 * 109.46558 * 299.99735 * 15 14 13 42 42 H 1.09000 * 109.47486 * 59.99938 * 16 15 14 43 43 H 1.09001 * 109.47362 * 299.99215 * 16 15 14 44 44 H 0.97005 * 119.99656 * 180.02562 * 20 19 17 45 45 H 1.07997 * 120.02853 * 0.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2364 -1.1210 -0.7650 5 6 2.2365 -1.1209 0.7651 6 1 3.1714 -0.8750 1.2686 7 7 1.3938 -2.1151 1.4430 8 6 2.1099 -2.7335 2.5668 9 6 1.2157 -3.7449 3.2365 10 6 1.2205 -5.0606 2.8105 11 6 0.4010 -5.9907 3.4225 12 6 -0.4247 -5.6078 4.4620 13 6 -0.4313 -4.2888 4.8911 14 8 -1.2430 -3.9095 5.9130 15 6 -2.0630 -4.9220 6.5002 16 6 -2.9013 -4.3107 7.6247 17 6 -3.7665 -5.3782 8.2434 18 1 -3.7262 -6.3903 7.8688 19 6 -4.6134 -5.0616 9.2843 20 7 -5.3689 -5.9931 9.8239 21 14 -4.6890 -3.3093 9.9272 22 1 -5.7260 -2.5525 9.1809 23 1 -5.0321 -3.3265 11.3718 24 1 -3.3686 -2.6561 9.7398 25 6 0.3883 -3.3560 4.2718 26 1 -0.3633 0.0773 1.0248 27 1 -0.3634 0.8488 -0.5793 28 1 -0.3633 -0.9261 -0.4454 29 1 3.1824 1.3084 -0.4455 30 1 1.5812 2.0743 -0.5794 31 1 2.2772 1.7414 1.0248 32 1 3.1715 -0.8752 -1.2683 33 1 1.6112 -1.8587 -1.2679 34 1 0.5253 -1.7037 1.7502 35 1 2.3905 -1.9642 3.2862 36 1 3.0071 -3.2298 2.1969 37 1 1.8649 -5.3617 1.9979 38 1 0.4063 -7.0175 3.0877 39 1 -1.0650 -6.3348 4.9394 40 1 -1.4307 -5.7117 6.9059 41 1 -2.7240 -5.3398 5.7407 42 1 -3.5336 -3.5211 7.2185 43 1 -2.2407 -3.8925 8.3842 44 1 -5.9650 -5.7703 10.5560 45 1 0.3816 -2.3275 4.6012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338959019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:40 Heat of formation + Delta-G solvation = -22.109127 kcal Electronic energy + Delta-G solvation = -21785.576024 eV Core-core repulsion = 18574.605913 eV Total energy + Delta-G solvation = -3210.970111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.12103 -39.77712 -38.65760 -35.55894 -35.21672 -32.94167 -31.84592 -30.69589 -29.56471 -28.39514 -27.21481 -25.95155 -23.46866 -23.07202 -22.20916 -21.57822 -19.97709 -19.29226 -18.40197 -17.06661 -17.01493 -16.89663 -16.60251 -16.44273 -16.10791 -15.50992 -14.94020 -14.85303 -14.55611 -14.37115 -14.29406 -14.16262 -13.91032 -13.50869 -13.20485 -13.09574 -13.05571 -12.99745 -12.57703 -12.51221 -12.42603 -12.12113 -12.02311 -11.97074 -11.76670 -11.57858 -11.44892 -11.33565 -10.83198 -10.52135 -9.86371 -9.20717 -9.11740 -8.36474 -6.43401 0.31354 0.52291 1.34899 1.36250 1.49020 2.30497 2.31814 2.71077 2.82261 2.98397 3.23413 3.78318 3.87230 3.88895 3.95694 4.09575 4.18788 4.19882 4.20919 4.24783 4.37606 4.43930 4.54456 4.57185 4.64301 4.70282 4.75583 4.77197 4.93051 5.02688 5.05886 5.06745 5.07732 5.12051 5.15686 5.27750 5.28788 5.39458 5.47230 5.47377 5.53265 5.63817 5.87254 6.09526 6.14509 6.31855 6.51083 6.62163 7.21778 8.79229 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.002680 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.267824 B =10444.518664 C =11442.549998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.142 4.142 3 C -0.114 4.114 4 C -0.158 4.158 5 C 0.016 3.984 6 H 0.107 0.893 7 N -0.659 5.659 8 C 0.109 3.891 9 C -0.047 4.047 10 C -0.139 4.139 11 C -0.081 4.081 12 C -0.223 4.223 13 C 0.108 3.892 14 O -0.336 6.336 15 C 0.087 3.913 16 C -0.006 4.006 17 C -0.537 4.537 18 H 0.041 0.959 19 C 0.013 3.987 20 N -0.942 5.942 21 Si 0.950 3.050 22 H -0.264 1.264 23 H -0.279 1.279 24 H -0.251 1.251 25 C -0.160 4.160 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.342 0.658 35 H 0.047 0.953 36 H 0.096 0.904 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.123 0.877 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.026 0.974 43 H 0.028 0.972 44 H 0.270 0.730 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.793 11.764 -21.573 30.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.144 4.144 3 C -0.171 4.171 4 C -0.197 4.197 5 C -0.094 4.094 6 H 0.125 0.875 7 N -0.290 5.290 8 C -0.019 4.019 9 C -0.047 4.047 10 C -0.157 4.157 11 C -0.099 4.099 12 C -0.242 4.242 13 C 0.063 3.937 14 O -0.251 6.251 15 C 0.013 3.987 16 C -0.043 4.043 17 C -0.575 4.575 18 H 0.060 0.940 19 C -0.185 4.185 20 N -0.581 5.581 21 Si 0.772 3.228 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.174 1.174 25 C -0.179 4.179 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.123 0.877 33 H 0.107 0.893 34 H 0.163 0.837 35 H 0.065 0.935 36 H 0.115 0.885 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.141 0.859 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.046 0.954 44 H 0.079 0.921 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 18.786 11.405 -21.770 30.934 hybrid contribution -0.786 0.560 1.398 1.699 sum 18.000 11.965 -20.372 29.701 Atomic orbital electron populations 1.21273 0.92179 1.02277 1.01620 1.21974 0.95167 0.91887 1.05336 1.21369 1.00340 0.93397 1.01982 1.23430 1.02302 1.00068 0.93859 1.22611 0.97991 0.94906 0.93940 0.87532 1.60263 1.06857 1.33317 1.28601 1.20875 0.95352 0.94619 0.91051 1.19670 0.95871 0.95274 0.93921 1.21164 1.01059 0.92360 1.01159 1.21229 0.93984 1.00846 0.93807 1.21501 1.04965 0.95241 1.02484 1.19408 0.91676 0.93959 0.88669 1.86026 1.52886 1.39542 1.46628 1.22655 0.91525 0.89496 0.95033 1.19442 0.94677 0.96566 0.93637 1.21106 1.22939 0.95904 1.17581 0.94022 1.25891 0.94253 1.02173 0.96196 1.70028 1.26397 1.35676 1.26030 0.85666 0.79955 0.79398 0.77736 1.18924 1.20397 1.17446 1.20428 0.99048 0.99072 0.99329 0.92809 0.91331 0.92594 0.91662 0.91595 0.92410 0.87722 0.89266 0.83734 0.93503 0.88533 0.83618 0.83518 0.85929 0.92495 0.92542 0.95541 0.95415 0.92069 0.85386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.66 8.79 71.98 0.63 -1.03 16 2 C -0.14 -1.90 2.70 -52.18 -0.14 -2.04 16 3 C -0.11 -1.21 9.85 71.98 0.71 -0.50 16 4 C -0.16 -2.13 9.75 30.60 0.30 -1.83 16 5 C 0.02 0.23 5.96 44.92 0.27 0.49 16 6 H 0.11 1.37 7.90 -2.39 -0.02 1.35 16 7 N -0.66 -11.40 6.55 -495.56 -3.25 -14.65 16 8 C 0.11 1.86 5.66 85.55 0.48 2.35 16 9 C -0.05 -1.05 5.39 -19.88 -0.11 -1.16 16 10 C -0.14 -2.99 9.70 22.28 0.22 -2.78 16 11 C -0.08 -1.94 10.04 22.25 0.22 -1.72 16 12 C -0.22 -6.80 9.04 22.36 0.20 -6.59 16 13 C 0.11 3.63 6.69 22.51 0.15 3.78 16 14 O -0.34 -13.29 10.14 -92.49 -0.94 -14.23 16 15 C 0.09 3.69 4.68 71.98 0.34 4.02 16 16 C -0.01 -0.28 4.41 29.85 0.13 -0.15 16 17 C -0.54 -31.05 9.66 25.60 0.25 -30.81 16 18 H 0.04 2.60 7.99 -2.91 -0.02 2.57 16 19 C 0.01 0.76 5.47 84.66 0.46 1.23 16 20 N -0.94 -58.39 13.96 21.45 0.30 -58.09 16 21 Si 0.95 44.33 27.47 68.60 1.88 46.21 16 22 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 24 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 25 C -0.16 -4.44 9.64 22.37 0.22 -4.23 16 26 H 0.05 0.80 7.59 -2.38 -0.02 0.79 16 27 H 0.07 0.85 7.92 -2.39 -0.02 0.83 16 28 H 0.05 0.88 7.90 -2.39 -0.02 0.86 16 29 H 0.06 0.58 7.90 -2.38 -0.02 0.57 16 30 H 0.07 0.64 7.92 -2.39 -0.02 0.62 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.10 1.12 8.05 -2.39 -0.02 1.10 16 33 H 0.09 1.38 8.05 -2.39 -0.02 1.36 16 34 H 0.34 6.39 7.19 -89.70 -0.64 5.74 16 35 H 0.05 0.76 8.09 -2.39 -0.02 0.74 16 36 H 0.10 1.41 8.09 -2.39 -0.02 1.39 16 37 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 38 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 39 H 0.12 3.84 6.30 -2.91 -0.02 3.82 16 40 H 0.06 2.35 7.66 -2.39 -0.02 2.33 16 41 H 0.06 2.33 7.66 -2.39 -0.02 2.31 16 42 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16 43 H 0.03 1.34 7.20 -2.39 -0.02 1.32 16 44 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 45 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -65.06 367.89 2.59 -62.47 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.26 Total: 19.24 kcal Atomic # 6 Polarization: -45.28 SS G_CDS: 4.33 Total: -40.95 kcal Atomic # 7 Polarization: -69.79 SS G_CDS: -2.95 Total: -72.74 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.94 Total: -14.23 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.21 kcal Total: -65.06 2.59 -62.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338959019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.359 kcal (2) G-P(sol) polarization free energy of solvation -65.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds