Wall clock time and date at job start Tue Mar 31 2020 06:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.53001 * 109.47049 * 185.00237 * 4 2 1 6 6 H 1.09002 * 109.46829 * 305.00193 * 5 4 2 7 7 C 1.50700 * 109.46862 * 185.00281 * 5 4 2 8 8 O 1.21284 * 119.99674 * 239.99654 * 7 5 4 9 9 N 1.34773 * 120.00401 * 59.99948 * 7 5 4 10 10 C 1.46496 * 120.00097 * 179.97438 * 9 7 5 11 11 C 1.53006 * 109.46936 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47085 * 180.02562 * 11 10 9 13 13 H 1.08007 * 120.00195 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00036 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00073 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99854 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46881 * 90.00676 * 16 14 12 18 18 H 1.48505 * 109.46995 * 210.00136 * 16 14 12 19 19 H 1.48502 * 109.47399 * 330.00046 * 16 14 12 20 20 C 1.50700 * 109.47108 * 65.00259 * 5 4 2 21 21 C 1.38227 * 120.00086 * 59.72343 * 20 5 4 22 22 C 1.38237 * 120.00163 * 179.80811 * 21 20 5 23 23 C 1.38234 * 119.99637 * 0.40423 * 22 21 20 24 24 C 1.38239 * 120.00076 * 359.85157 * 23 22 21 25 25 C 1.38229 * 119.99888 * 359.95791 * 24 23 22 26 26 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 29 29 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 30 30 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 31 31 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 32 32 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 34 34 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 35 35 H 0.97008 * 119.99643 * 359.97438 * 9 7 5 36 36 H 1.09000 * 109.47610 * 300.00305 * 10 9 7 37 37 H 1.09006 * 109.46898 * 60.00468 * 10 9 7 38 38 H 1.09000 * 109.47295 * 300.00070 * 11 10 9 39 39 H 1.08997 * 109.46908 * 60.00858 * 11 10 9 40 40 H 0.97000 * 119.99572 * 179.97438 * 15 14 12 41 41 H 1.08006 * 120.00253 * 0.02562 * 21 20 5 42 42 H 1.07999 * 120.00220 * 180.23420 * 22 21 20 43 43 H 1.07998 * 120.00083 * 179.83194 * 23 22 21 44 44 H 1.07995 * 119.99924 * 179.97438 * 24 23 22 45 45 H 1.08001 * 119.99856 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.8311 -1.1879 6 1 3.9954 0.1611 -1.0526 7 6 4.0774 -1.4303 -2.4722 8 8 4.7012 -2.4701 -2.4496 9 7 3.8425 -0.8107 -3.6458 10 6 4.3412 -1.3929 -4.8941 11 6 3.9404 -0.4991 -6.0695 12 6 4.4529 -1.0984 -7.3538 13 1 5.0085 -2.0244 -7.3338 14 6 4.2116 -0.4651 -8.5545 15 7 3.5346 0.6622 -8.5790 16 14 4.8462 -1.2084 -10.1465 17 1 3.8213 -2.1245 -10.7081 18 1 5.1280 -0.1240 -11.1212 19 1 6.0937 -1.9672 -9.8759 20 6 3.9589 -1.7118 -0.0302 21 6 3.5227 -3.0225 0.0208 22 6 3.8874 -3.8315 1.0807 23 6 4.6815 -3.3274 2.0937 24 6 5.1134 -2.0151 2.0453 25 6 4.7519 -1.2073 0.9834 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6054 -1.7198 -1.2951 34 1 1.7517 -0.1583 -2.1369 35 1 3.3432 0.0208 -3.6638 36 1 5.4275 -1.4709 -4.8503 37 1 3.9109 -2.3853 -5.0295 38 1 2.8541 -0.4217 -6.1132 39 1 4.3704 0.4933 -5.9344 40 1 3.3652 1.1078 -9.4238 41 1 2.8997 -3.4155 -0.7691 42 1 3.5497 -4.8567 1.1187 43 1 4.9642 -3.9586 2.9231 44 1 5.7334 -1.6212 2.8369 45 1 5.0890 -0.1819 0.9458 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342653103.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:20 Heat of formation + Delta-G solvation = -48.319387 kcal Electronic energy + Delta-G solvation = -22845.077074 eV Core-core repulsion = 19632.970401 eV Total energy + Delta-G solvation = -3212.106673 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.31090 -38.47229 -36.71323 -34.85722 -32.90319 -32.64024 -30.88033 -29.92020 -28.53045 -27.31624 -25.24734 -24.24684 -22.57730 -21.93995 -20.87723 -20.18051 -19.44648 -16.93871 -16.82540 -16.30195 -15.77928 -15.42904 -14.84665 -14.65771 -14.56433 -14.45158 -13.99416 -13.76284 -13.39724 -13.28174 -12.95644 -12.69308 -12.49008 -12.28605 -12.27145 -12.13818 -11.71073 -11.20951 -11.14999 -11.07962 -11.05133 -10.97696 -10.67476 -10.64301 -10.59622 -10.31737 -9.75143 -9.43647 -9.17755 -8.83668 -8.64602 -8.53309 -8.34429 -6.10032 -4.12791 1.37444 1.46665 3.01312 3.28992 3.35102 3.39163 3.61077 3.95984 4.41371 4.49054 4.66176 4.76953 4.87078 4.92608 5.01069 5.11815 5.19624 5.25464 5.27089 5.36180 5.49471 5.51766 5.59296 5.60454 5.68039 5.74621 5.81146 5.87550 6.00812 6.04989 6.08350 6.19161 6.27214 6.34883 6.35410 6.47654 6.54222 6.67210 6.74034 6.93626 7.03121 7.51282 7.61198 7.88294 8.03115 8.27587 8.67814 8.93246 9.52125 11.01541 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018964 B = 0.003405 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.111162 B = 8221.366657 C = 9182.236626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.151 4.151 4 C -0.104 4.104 5 C -0.073 4.073 6 H 0.104 0.896 7 C 0.509 3.491 8 O -0.542 6.542 9 N -0.721 5.721 10 C 0.122 3.878 11 C 0.013 3.987 12 C -0.521 4.521 13 H 0.059 0.941 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.896 3.104 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.054 4.054 21 C -0.083 4.083 22 C -0.123 4.123 23 C -0.125 4.125 24 C -0.125 4.125 25 C -0.114 4.114 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.397 0.603 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.262 0.738 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.004 -0.561 22.071 22.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.208 4.208 4 C -0.142 4.142 5 C -0.094 4.094 6 H 0.122 0.878 7 C 0.294 3.706 8 O -0.419 6.419 9 N -0.371 5.371 10 C 0.000 4.000 11 C -0.024 4.024 12 C -0.560 4.560 13 H 0.077 0.923 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.724 3.276 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.054 4.054 21 C -0.102 4.102 22 C -0.141 4.141 23 C -0.143 4.143 24 C -0.143 4.143 25 C -0.132 4.132 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.230 0.770 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.610 -1.178 21.926 22.253 hybrid contribution 0.150 0.096 -1.034 1.049 sum -3.460 -1.083 20.892 21.204 Atomic orbital electron populations 1.21831 0.95131 1.01728 1.01759 1.21101 0.95672 0.96304 0.98227 1.21918 1.01136 0.95890 1.01879 1.21692 0.91955 1.01716 0.98840 1.20465 0.97657 0.99709 0.91600 0.87841 1.20370 0.80233 0.85016 0.85000 1.90694 1.40718 1.23359 1.87127 1.46324 1.56627 1.27103 1.07077 1.21711 0.98276 0.97878 0.82156 1.19319 0.97303 0.94819 0.91006 1.21057 1.35370 1.08565 0.91028 0.92286 1.24992 0.95070 0.94876 0.99326 1.69955 1.40073 1.16803 1.26477 0.86520 0.79367 0.78795 0.82925 1.20553 1.21160 1.19722 1.19280 0.97422 0.94329 0.94385 1.20920 0.98992 0.93123 0.97119 1.21094 0.98847 0.99571 0.94551 1.21083 0.98659 0.95694 0.98874 1.21025 1.00535 0.94276 0.98472 1.20981 0.98183 0.99749 0.94306 0.92484 0.92752 0.92818 0.90846 0.92351 0.92821 0.92517 0.91099 0.90707 0.76969 0.92657 0.92644 0.95960 0.95971 0.92853 0.86362 0.86353 0.86514 0.86386 0.86377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.19 37.16 0.34 -0.89 16 2 C -0.09 -0.85 2.81 -90.62 -0.25 -1.11 16 3 C -0.15 -1.25 8.95 37.16 0.33 -0.92 16 4 C -0.10 -1.11 3.99 -26.73 -0.11 -1.22 16 5 C -0.07 -0.91 2.24 -92.92 -0.21 -1.12 16 6 H 0.10 1.13 6.08 -51.93 -0.32 0.81 16 7 C 0.51 8.56 7.03 -10.99 -0.08 8.48 16 8 O -0.54 -11.18 15.13 5.55 0.08 -11.10 16 9 N -0.72 -12.45 5.42 -60.29 -0.33 -12.78 16 10 C 0.12 2.60 5.61 -4.04 -0.02 2.58 16 11 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 12 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 13 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 16 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 C -0.05 -0.69 3.29 -104.63 -0.34 -1.03 16 21 C -0.08 -1.11 7.88 -39.59 -0.31 -1.42 16 22 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 23 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 24 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 25 C -0.11 -1.31 9.67 -39.59 -0.38 -1.70 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.71 7.23 -51.93 -0.38 0.34 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.46 6.46 -51.93 -0.34 0.12 16 33 H 0.07 0.80 7.21 -51.93 -0.37 0.42 16 34 H 0.07 0.78 7.43 -51.93 -0.39 0.40 16 35 H 0.40 5.92 7.83 -40.82 -0.32 5.60 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.12 1.62 7.49 -52.48 -0.39 1.23 16 42 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 43 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 45 H 0.12 1.14 7.95 -52.49 -0.42 0.73 16 LS Contribution 366.34 15.07 5.52 5.52 Total: -1.00 -31.63 366.34 -9.32 -40.95 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.53 Total: 3.05 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -2.78 Total: -16.70 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.41 Total: -38.10 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.08 Total: -11.10 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.63 -9.32 -40.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342653103.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.367 kcal (2) G-P(sol) polarization free energy of solvation -31.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds