Wall clock time and date at job start Tue Mar 31 2020 06:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.53001 * 109.47049 * 185.00237 * 4 2 1 6 6 H 1.09002 * 109.46829 * 305.00193 * 5 4 2 7 7 C 1.50700 * 109.46862 * 185.00281 * 5 4 2 8 8 O 1.21284 * 119.99674 * 239.99654 * 7 5 4 9 9 N 1.34773 * 120.00401 * 59.99948 * 7 5 4 10 10 C 1.46496 * 120.00097 * 179.97438 * 9 7 5 11 11 C 1.53006 * 109.46936 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47085 * 180.02562 * 11 10 9 13 13 H 1.08007 * 120.00195 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00036 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00073 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99854 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46881 * 90.00676 * 16 14 12 18 18 H 1.48505 * 109.46995 * 210.00136 * 16 14 12 19 19 H 1.48502 * 109.47399 * 330.00046 * 16 14 12 20 20 C 1.50700 * 109.47108 * 65.00259 * 5 4 2 21 21 C 1.38227 * 120.00086 * 59.72343 * 20 5 4 22 22 C 1.38237 * 120.00163 * 179.80811 * 21 20 5 23 23 C 1.38234 * 119.99637 * 0.40423 * 22 21 20 24 24 C 1.38239 * 120.00076 * 359.85157 * 23 22 21 25 25 C 1.38229 * 119.99888 * 359.95791 * 24 23 22 26 26 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 29 29 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 30 30 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 31 31 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 32 32 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 34 34 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 35 35 H 0.97008 * 119.99643 * 359.97438 * 9 7 5 36 36 H 1.09000 * 109.47610 * 300.00305 * 10 9 7 37 37 H 1.09006 * 109.46898 * 60.00468 * 10 9 7 38 38 H 1.09000 * 109.47295 * 300.00070 * 11 10 9 39 39 H 1.08997 * 109.46908 * 60.00858 * 11 10 9 40 40 H 0.97000 * 119.99572 * 179.97438 * 15 14 12 41 41 H 1.08006 * 120.00253 * 0.02562 * 21 20 5 42 42 H 1.07999 * 120.00220 * 180.23420 * 22 21 20 43 43 H 1.07998 * 120.00083 * 179.83194 * 23 22 21 44 44 H 1.07995 * 119.99924 * 179.97438 * 24 23 22 45 45 H 1.08001 * 119.99856 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.8311 -1.1879 6 1 3.9954 0.1611 -1.0526 7 6 4.0774 -1.4303 -2.4722 8 8 4.7012 -2.4701 -2.4496 9 7 3.8425 -0.8107 -3.6458 10 6 4.3412 -1.3929 -4.8941 11 6 3.9404 -0.4991 -6.0695 12 6 4.4529 -1.0984 -7.3538 13 1 5.0085 -2.0244 -7.3338 14 6 4.2116 -0.4651 -8.5545 15 7 3.5346 0.6622 -8.5790 16 14 4.8462 -1.2084 -10.1465 17 1 3.8213 -2.1245 -10.7081 18 1 5.1280 -0.1240 -11.1212 19 1 6.0937 -1.9672 -9.8759 20 6 3.9589 -1.7118 -0.0302 21 6 3.5227 -3.0225 0.0208 22 6 3.8874 -3.8315 1.0807 23 6 4.6815 -3.3274 2.0937 24 6 5.1134 -2.0151 2.0453 25 6 4.7519 -1.2073 0.9834 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6054 -1.7198 -1.2951 34 1 1.7517 -0.1583 -2.1369 35 1 3.3432 0.0208 -3.6638 36 1 5.4275 -1.4709 -4.8503 37 1 3.9109 -2.3853 -5.0295 38 1 2.8541 -0.4217 -6.1132 39 1 4.3704 0.4933 -5.9344 40 1 3.3652 1.1078 -9.4238 41 1 2.8997 -3.4155 -0.7691 42 1 3.5497 -4.8567 1.1187 43 1 4.9642 -3.9586 2.9231 44 1 5.7334 -1.6212 2.8369 45 1 5.0890 -0.1819 0.9458 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342653103.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:19 Heat of formation + Delta-G solvation = -65.333068 kcal Electronic energy + Delta-G solvation = -22845.814843 eV Core-core repulsion = 19632.970401 eV Total energy + Delta-G solvation = -3212.844442 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.45732 -39.61979 -37.57111 -36.59084 -34.81179 -33.64358 -31.74704 -31.63528 -29.63498 -27.97131 -26.89720 -25.49884 -23.51335 -23.23168 -22.47126 -21.26708 -20.44132 -18.58555 -18.02344 -17.77825 -16.76473 -16.73807 -16.46316 -16.04691 -15.81558 -15.48591 -15.01313 -14.88768 -14.53245 -14.35762 -14.23038 -14.16779 -13.51542 -13.46659 -13.23639 -13.05017 -12.93167 -12.91657 -12.54735 -12.49702 -12.24467 -11.97731 -11.89256 -11.83629 -11.63230 -11.46596 -11.42534 -11.41500 -10.68755 -10.61110 -10.00962 -9.72819 -9.56107 -8.24956 -6.35398 0.48069 0.58105 1.41049 1.41315 1.52867 1.65105 2.26156 2.45000 2.98812 3.09723 3.52943 3.72050 3.93948 4.07273 4.11683 4.18208 4.22718 4.29919 4.36308 4.46927 4.51227 4.54158 4.67154 4.75613 4.82109 4.84307 4.84623 4.91343 5.02973 5.09324 5.12294 5.18801 5.21133 5.29225 5.34988 5.48608 5.50118 5.55994 5.57420 5.61973 5.67409 5.75700 5.78187 6.15544 6.17377 6.63438 6.77594 7.28986 7.33936 8.86779 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018964 B = 0.003405 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.111162 B = 8221.366657 C = 9182.236626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.151 4.151 4 C -0.101 4.101 5 C -0.059 4.059 6 H 0.124 0.876 7 C 0.508 3.492 8 O -0.581 6.581 9 N -0.716 5.716 10 C 0.142 3.858 11 C 0.024 3.976 12 C -0.548 4.548 13 H 0.057 0.943 14 C 0.008 3.992 15 N -0.925 5.925 16 Si 0.964 3.036 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.267 1.267 20 C -0.070 4.070 21 C -0.107 4.107 22 C -0.134 4.134 23 C -0.127 4.127 24 C -0.127 4.127 25 C -0.121 4.121 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.409 0.591 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.009 0.991 39 H 0.009 0.991 40 H 0.266 0.734 41 H 0.101 0.899 42 H 0.131 0.869 43 H 0.143 0.857 44 H 0.146 0.854 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.643 -0.122 23.382 23.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 C -0.208 4.208 4 C -0.139 4.139 5 C -0.080 4.080 6 H 0.142 0.858 7 C 0.296 3.704 8 O -0.461 6.461 9 N -0.367 5.367 10 C 0.018 3.982 11 C -0.013 4.013 12 C -0.586 4.586 13 H 0.075 0.925 14 C -0.190 4.190 15 N -0.565 5.565 16 Si 0.788 3.212 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.192 1.192 20 C -0.070 4.070 21 C -0.125 4.125 22 C -0.152 4.152 23 C -0.145 4.145 24 C -0.144 4.144 25 C -0.139 4.139 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.245 0.755 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.028 0.972 39 H 0.027 0.973 40 H 0.075 0.925 41 H 0.119 0.881 42 H 0.149 0.851 43 H 0.161 0.839 44 H 0.164 0.836 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.268 -0.722 23.257 23.497 hybrid contribution 0.037 -0.065 -1.379 1.381 sum -3.231 -0.787 21.878 22.129 Atomic orbital electron populations 1.21829 0.94588 1.01695 1.02296 1.21021 0.96051 0.96591 0.96853 1.21926 1.01315 0.95149 1.02431 1.21689 0.90661 1.01500 1.00021 1.20422 0.98636 1.00129 0.88814 0.85792 1.21157 0.79088 0.84293 0.85884 1.90671 1.42461 1.25183 1.87754 1.46145 1.56778 1.27625 1.06150 1.21195 0.97393 0.96712 0.82921 1.19121 0.96103 0.94528 0.91579 1.21465 1.35746 1.08827 0.92609 0.92507 1.25850 0.95133 0.95247 1.02813 1.70053 1.40906 1.17918 1.27585 0.85466 0.78958 0.78166 0.78590 1.19749 1.20408 1.19167 1.19370 0.98412 0.94274 0.94994 1.20959 0.99923 0.94001 0.97595 1.21339 0.99175 1.00178 0.94545 1.21439 0.97730 0.96252 0.99063 1.21412 1.00150 0.94139 0.98730 1.21265 0.97626 1.00910 0.94131 0.92512 0.93125 0.91700 0.91256 0.92338 0.91781 0.92240 0.92188 0.90542 0.75457 0.93850 0.93812 0.97246 0.97260 0.92508 0.88077 0.85115 0.83937 0.83646 0.84485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.19 71.98 0.66 -1.61 16 2 C -0.09 -1.45 2.81 -10.79 -0.03 -1.48 16 3 C -0.15 -2.18 8.95 71.98 0.64 -1.54 16 4 C -0.10 -2.10 3.99 30.59 0.12 -1.98 16 5 C -0.06 -1.43 2.24 -12.29 -0.03 -1.46 16 6 H 0.12 2.49 6.08 -2.39 -0.01 2.48 16 7 C 0.51 17.26 7.03 87.66 0.62 17.88 16 8 O -0.58 -24.55 15.13 -3.04 -0.05 -24.60 16 9 N -0.72 -25.01 5.42 -463.05 -2.51 -27.52 16 10 C 0.14 6.19 5.61 86.38 0.48 6.67 16 11 C 0.02 1.22 5.09 29.85 0.15 1.37 16 12 C -0.55 -30.85 9.11 25.60 0.23 -30.62 16 13 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 14 C 0.01 0.48 5.46 84.65 0.46 0.94 16 15 N -0.93 -54.16 13.29 21.45 0.28 -53.88 16 16 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 18 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 C -0.07 -1.76 3.29 -19.87 -0.07 -1.82 16 21 C -0.11 -2.87 7.88 22.27 0.18 -2.70 16 22 C -0.13 -3.08 10.05 22.27 0.22 -2.86 16 23 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 24 C -0.13 -2.37 10.05 22.27 0.22 -2.14 16 25 C -0.12 -2.56 9.67 22.27 0.22 -2.34 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 1.25 7.23 -2.39 -0.02 1.23 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.82 6.46 -2.39 -0.02 0.81 16 33 H 0.06 1.38 7.21 -2.39 -0.02 1.36 16 34 H 0.08 1.55 7.43 -2.39 -0.02 1.54 16 35 H 0.41 12.20 7.83 -92.70 -0.73 11.47 16 36 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 38 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 41 H 0.10 2.96 7.49 -2.91 -0.02 2.94 16 42 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 43 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 44 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 45 H 0.14 2.28 7.95 -2.91 -0.02 2.25 16 Total: -1.00 -68.07 366.34 4.30 -63.76 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.23 Total: 22.36 kcal Atomic # 6 Polarization: -30.23 SS G_CDS: 4.32 Total: -25.91 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -2.22 Total: -81.40 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.05 Total: -24.60 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -68.07 4.30 -63.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342653103.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.568 kcal (2) G-P(sol) polarization free energy of solvation -68.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds