Wall clock time and date at job start Tue Mar 31 2020 06:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46836 * 2 1 4 4 C 1.52993 * 109.47165 * 239.99822 * 2 1 3 5 5 C 1.53003 * 109.47318 * 294.45834 * 4 2 1 6 6 H 1.08995 * 109.46610 * 54.11439 * 5 4 2 7 7 C 1.50701 * 109.46935 * 174.11499 * 5 4 2 8 8 O 1.21283 * 119.99431 * 113.22945 * 7 5 4 9 9 N 1.34773 * 120.00106 * 293.22542 * 7 5 4 10 10 C 1.46501 * 120.00140 * 184.82551 * 9 7 5 11 11 C 1.52993 * 109.47080 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47051 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00052 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00194 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00146 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99989 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47153 * 89.99827 * 16 14 12 18 18 H 1.48501 * 109.47233 * 210.00028 * 16 14 12 19 19 H 1.48500 * 109.47217 * 329.99799 * 16 14 12 20 20 C 1.50699 * 109.46784 * 294.11542 * 5 4 2 21 21 C 1.38241 * 120.00027 * 299.72390 * 20 5 4 22 22 C 1.38236 * 119.99581 * 179.79115 * 21 20 5 23 23 C 1.38231 * 120.00293 * 0.43902 * 22 21 20 24 24 C 1.38237 * 119.99784 * 359.81857 * 23 22 21 25 25 C 1.38232 * 120.00296 * 359.97396 * 24 23 22 26 26 H 1.09004 * 109.47264 * 296.31684 * 1 2 3 27 27 H 1.09003 * 109.47207 * 56.31657 * 1 2 3 28 28 H 1.09005 * 109.46974 * 176.31510 * 1 2 3 29 29 H 1.08998 * 109.46881 * 119.99666 * 2 1 3 30 30 H 1.09002 * 109.47342 * 59.99710 * 3 2 1 31 31 H 1.09005 * 109.46990 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47662 * 300.00008 * 3 2 1 33 33 H 1.08999 * 109.47099 * 54.46306 * 4 2 1 34 34 H 1.09007 * 109.46920 * 174.45731 * 4 2 1 35 35 H 0.96997 * 119.99989 * 4.82851 * 9 7 5 36 36 H 1.08994 * 109.47274 * 300.00302 * 10 9 7 37 37 H 1.09000 * 109.46668 * 60.00221 * 10 9 7 38 38 H 1.09002 * 109.47580 * 299.99738 * 11 10 9 39 39 H 1.09000 * 109.47135 * 60.00573 * 11 10 9 40 40 H 0.97000 * 120.00305 * 180.02562 * 15 14 12 41 41 H 1.08003 * 119.99930 * 0.02562 * 21 20 5 42 42 H 1.07998 * 119.99282 * 180.27731 * 22 21 20 43 43 H 1.07997 * 119.99955 * 179.83477 * 23 22 21 44 44 H 1.08003 * 119.99587 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.00337 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6470 -2.1984 -1.1815 6 1 0.5714 -2.2813 -1.0254 7 6 2.0210 -2.8774 -2.4738 8 8 2.8902 -3.7232 -2.4848 9 7 1.3895 -2.5450 -3.6171 10 6 1.6775 -3.2776 -4.8527 11 6 0.8332 -2.7056 -5.9932 12 6 1.1289 -3.4596 -7.2640 13 1 1.8469 -4.2664 -7.2586 14 6 0.4828 -3.1196 -8.4336 15 7 0.7413 -3.7773 -9.5428 16 14 -0.7585 -1.7238 -8.4431 17 1 -0.0648 -0.4464 -8.7467 18 1 -1.7897 -1.9855 -9.4792 19 1 -1.4081 -1.6299 -7.1110 20 6 2.3729 -2.8594 -0.0382 21 6 3.7549 -2.8852 -0.0195 22 6 4.4208 -3.4878 1.0314 23 6 3.7047 -4.0724 2.0591 24 6 2.3226 -4.0513 2.0377 25 6 1.6567 -3.4450 0.9890 26 1 -0.3634 0.4556 0.9212 27 1 -0.3634 0.5700 -0.8552 28 1 -0.3633 -1.0256 -0.0661 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.5980 -0.2679 -2.1364 34 1 3.1256 -0.6361 -1.3001 35 1 0.7445 -1.8206 -3.6219 36 1 2.7349 -3.1766 -5.0969 37 1 1.4353 -4.3314 -4.7150 38 1 -0.2243 -2.8070 -5.7487 39 1 1.0749 -1.6518 -6.1310 40 1 0.2870 -3.5379 -10.3657 41 1 4.3144 -2.4313 -0.8241 42 1 5.5005 -3.5040 1.0482 43 1 4.2249 -4.5455 2.8788 44 1 1.7631 -4.5085 2.8405 45 1 0.5770 -3.4281 0.9725 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342653104.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:23 Heat of formation + Delta-G solvation = -43.955264 kcal Electronic energy + Delta-G solvation = -22895.159262 eV Core-core repulsion = 19683.241832 eV Total energy + Delta-G solvation = -3211.917431 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.37698 -38.53585 -36.78457 -34.99608 -32.90673 -32.65679 -30.90778 -30.30511 -28.73682 -27.38770 -25.42620 -24.25936 -22.60678 -21.87891 -20.78188 -20.22927 -19.51628 -17.02061 -16.92415 -16.72208 -15.82491 -15.50576 -14.90224 -14.78467 -14.58652 -14.18976 -14.12373 -13.85416 -13.49358 -13.36641 -13.07299 -12.74187 -12.64409 -12.52320 -12.35387 -12.20000 -11.79818 -11.49737 -11.23369 -11.19290 -11.13800 -11.02604 -10.72282 -10.67773 -10.39228 -10.24305 -9.97056 -9.46382 -9.28712 -8.86204 -8.69991 -8.64374 -8.51046 -6.11882 -4.12042 1.33397 1.43916 2.92393 3.24172 3.31798 3.32997 3.52307 3.90033 4.36714 4.43074 4.59243 4.70004 4.80545 4.88294 4.98012 5.08178 5.12992 5.18370 5.20980 5.29662 5.42794 5.47081 5.52296 5.55448 5.61504 5.67284 5.74607 5.80738 5.96232 5.98373 6.05178 6.11830 6.13344 6.19862 6.20583 6.44252 6.51644 6.55435 6.63560 6.76247 6.99901 7.13259 7.22478 7.65943 7.91043 8.42833 8.58168 8.92569 9.48179 11.01212 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018164 B = 0.003672 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.151886 B = 7624.128633 C = 8624.819427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.104 4.104 5 C -0.073 4.073 6 H 0.103 0.897 7 C 0.511 3.489 8 O -0.537 6.537 9 N -0.726 5.726 10 C 0.130 3.870 11 C -0.022 4.022 12 C -0.523 4.523 13 H 0.075 0.925 14 C 0.069 3.931 15 N -0.898 5.898 16 Si 0.882 3.118 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.266 1.266 20 C -0.058 4.058 21 C -0.080 4.080 22 C -0.124 4.124 23 C -0.124 4.124 24 C -0.126 4.126 25 C -0.114 4.114 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.395 0.605 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.021 0.979 39 H 0.017 0.983 40 H 0.265 0.735 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.740 8.223 24.636 25.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.141 4.141 5 C -0.094 4.094 6 H 0.121 0.879 7 C 0.295 3.705 8 O -0.414 6.414 9 N -0.376 5.376 10 C 0.008 3.992 11 C -0.059 4.059 12 C -0.561 4.561 13 H 0.093 0.907 14 C -0.133 4.133 15 N -0.537 5.537 16 Si 0.709 3.291 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.191 1.191 20 C -0.059 4.059 21 C -0.098 4.098 22 C -0.142 4.142 23 C -0.142 4.142 24 C -0.144 4.144 25 C -0.132 4.132 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.228 0.772 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.040 0.960 39 H 0.035 0.965 40 H 0.075 0.925 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.315 7.569 24.395 25.577 hybrid contribution -1.015 0.930 -0.292 1.407 sum 0.299 8.499 24.103 25.560 Atomic orbital electron populations 1.21927 0.95215 1.01893 1.01812 1.21099 0.95891 0.96056 0.98258 1.21832 1.01008 0.95867 1.01733 1.21675 1.01970 0.91702 0.98787 1.20465 1.01523 0.95799 0.91644 0.87902 1.20359 0.82015 0.83120 0.84972 1.90705 1.31022 1.33237 1.86393 1.46306 1.44155 1.37495 1.09670 1.21496 1.00410 0.95495 0.81774 1.19787 0.95391 0.96703 0.94045 1.20924 1.25443 1.18518 0.91243 0.90651 1.25004 0.96541 0.96360 0.95386 1.69905 1.42879 1.40997 0.99899 0.86752 0.81526 0.82729 0.78071 1.20217 1.21262 1.19079 1.19281 0.93736 0.98396 0.94461 1.20942 0.93774 0.98010 0.97055 1.21109 0.99781 0.98812 0.94491 1.21095 0.94296 0.99988 0.98783 1.21027 0.94537 1.00243 0.98604 1.20982 0.99487 0.98387 0.94316 0.92780 0.92469 0.92445 0.90759 0.92775 0.92712 0.92573 0.90876 0.91012 0.77154 0.91970 0.92078 0.96041 0.96460 0.92545 0.86213 0.86318 0.86483 0.86367 0.86385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.05 37.16 0.34 -0.81 16 2 C -0.09 -0.79 2.82 -90.62 -0.26 -1.05 16 3 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 4 C -0.10 -1.02 4.03 -26.73 -0.11 -1.13 16 5 C -0.07 -0.86 2.25 -92.92 -0.21 -1.07 16 6 H 0.10 1.04 6.00 -51.93 -0.31 0.73 16 7 C 0.51 8.19 6.98 -10.99 -0.08 8.11 16 8 O -0.54 -10.72 14.86 5.56 0.08 -10.64 16 9 N -0.73 -11.76 5.49 -60.30 -0.33 -12.09 16 10 C 0.13 2.66 5.62 -4.04 -0.02 2.64 16 11 C -0.02 -0.49 4.15 -27.89 -0.12 -0.61 16 12 C -0.52 -14.65 9.66 -34.44 -0.33 -14.98 16 13 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16 14 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 15 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 16 Si 0.88 20.96 27.47 -169.99 -4.67 16.29 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 20 C -0.06 -0.72 3.41 -104.62 -0.36 -1.08 16 21 C -0.08 -1.03 7.79 -39.58 -0.31 -1.34 16 22 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 23 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 24 C -0.13 -1.30 10.05 -39.58 -0.40 -1.70 16 25 C -0.11 -1.26 9.67 -39.58 -0.38 -1.64 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.43 6.31 -51.93 -0.33 0.10 16 29 H 0.07 0.68 7.25 -51.93 -0.38 0.30 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.69 7.76 -51.93 -0.40 0.29 16 34 H 0.07 0.76 7.22 -51.92 -0.37 0.38 16 35 H 0.40 5.31 8.15 -40.82 -0.33 4.98 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 39 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.12 1.61 7.32 -52.48 -0.38 1.22 16 42 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 44 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 45 H 0.12 1.09 7.95 -52.49 -0.42 0.67 16 LS Contribution 362.95 15.07 5.47 5.47 Total: -1.00 -32.37 362.95 -8.96 -41.34 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -7.51 Total: 3.30 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -2.78 Total: -17.09 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.44 Total: -38.68 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.08 Total: -10.64 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.37 -8.96 -41.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342653104.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.618 kcal (2) G-P(sol) polarization free energy of solvation -32.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds