Wall clock time and date at job start Tue Mar 31 2020 06:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46836 * 2 1 4 4 C 1.52993 * 109.47165 * 239.99822 * 2 1 3 5 5 C 1.53003 * 109.47318 * 294.45834 * 4 2 1 6 6 H 1.08995 * 109.46610 * 54.11439 * 5 4 2 7 7 C 1.50701 * 109.46935 * 174.11499 * 5 4 2 8 8 O 1.21283 * 119.99431 * 113.22945 * 7 5 4 9 9 N 1.34773 * 120.00106 * 293.22542 * 7 5 4 10 10 C 1.46501 * 120.00140 * 184.82551 * 9 7 5 11 11 C 1.52993 * 109.47080 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47051 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00052 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00194 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00146 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99989 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47153 * 89.99827 * 16 14 12 18 18 H 1.48501 * 109.47233 * 210.00028 * 16 14 12 19 19 H 1.48500 * 109.47217 * 329.99799 * 16 14 12 20 20 C 1.50699 * 109.46784 * 294.11542 * 5 4 2 21 21 C 1.38241 * 120.00027 * 299.72390 * 20 5 4 22 22 C 1.38236 * 119.99581 * 179.79115 * 21 20 5 23 23 C 1.38231 * 120.00293 * 0.43902 * 22 21 20 24 24 C 1.38237 * 119.99784 * 359.81857 * 23 22 21 25 25 C 1.38232 * 120.00296 * 359.97396 * 24 23 22 26 26 H 1.09004 * 109.47264 * 296.31684 * 1 2 3 27 27 H 1.09003 * 109.47207 * 56.31657 * 1 2 3 28 28 H 1.09005 * 109.46974 * 176.31510 * 1 2 3 29 29 H 1.08998 * 109.46881 * 119.99666 * 2 1 3 30 30 H 1.09002 * 109.47342 * 59.99710 * 3 2 1 31 31 H 1.09005 * 109.46990 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47662 * 300.00008 * 3 2 1 33 33 H 1.08999 * 109.47099 * 54.46306 * 4 2 1 34 34 H 1.09007 * 109.46920 * 174.45731 * 4 2 1 35 35 H 0.96997 * 119.99989 * 4.82851 * 9 7 5 36 36 H 1.08994 * 109.47274 * 300.00302 * 10 9 7 37 37 H 1.09000 * 109.46668 * 60.00221 * 10 9 7 38 38 H 1.09002 * 109.47580 * 299.99738 * 11 10 9 39 39 H 1.09000 * 109.47135 * 60.00573 * 11 10 9 40 40 H 0.97000 * 120.00305 * 180.02562 * 15 14 12 41 41 H 1.08003 * 119.99930 * 0.02562 * 21 20 5 42 42 H 1.07998 * 119.99282 * 180.27731 * 22 21 20 43 43 H 1.07997 * 119.99955 * 179.83477 * 23 22 21 44 44 H 1.08003 * 119.99587 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.00337 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6470 -2.1984 -1.1815 6 1 0.5714 -2.2813 -1.0254 7 6 2.0210 -2.8774 -2.4738 8 8 2.8902 -3.7232 -2.4848 9 7 1.3895 -2.5450 -3.6171 10 6 1.6775 -3.2776 -4.8527 11 6 0.8332 -2.7056 -5.9932 12 6 1.1289 -3.4596 -7.2640 13 1 1.8469 -4.2664 -7.2586 14 6 0.4828 -3.1196 -8.4336 15 7 0.7413 -3.7773 -9.5428 16 14 -0.7585 -1.7238 -8.4431 17 1 -0.0648 -0.4464 -8.7467 18 1 -1.7897 -1.9855 -9.4792 19 1 -1.4081 -1.6299 -7.1110 20 6 2.3729 -2.8594 -0.0382 21 6 3.7549 -2.8852 -0.0195 22 6 4.4208 -3.4878 1.0314 23 6 3.7047 -4.0724 2.0591 24 6 2.3226 -4.0513 2.0377 25 6 1.6567 -3.4450 0.9890 26 1 -0.3634 0.4556 0.9212 27 1 -0.3634 0.5700 -0.8552 28 1 -0.3633 -1.0256 -0.0661 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.5980 -0.2679 -2.1364 34 1 3.1256 -0.6361 -1.3001 35 1 0.7445 -1.8206 -3.6219 36 1 2.7349 -3.1766 -5.0969 37 1 1.4353 -4.3314 -4.7150 38 1 -0.2243 -2.8070 -5.7487 39 1 1.0749 -1.6518 -6.1310 40 1 0.2870 -3.5379 -10.3657 41 1 4.3144 -2.4313 -0.8241 42 1 5.5005 -3.5040 1.0482 43 1 4.2249 -4.5455 2.8788 44 1 1.7631 -4.5085 2.8405 45 1 0.5770 -3.4281 0.9725 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342653104.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:22 Heat of formation + Delta-G solvation = -62.905871 kcal Electronic energy + Delta-G solvation = -22895.981022 eV Core-core repulsion = 19683.241832 eV Total energy + Delta-G solvation = -3212.739191 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.46482 -39.62577 -37.56822 -36.63691 -34.78927 -33.65400 -32.03855 -31.74422 -29.72402 -27.95980 -26.99041 -25.42678 -23.47918 -23.03973 -22.45067 -21.24787 -20.44561 -19.00053 -18.05930 -17.80343 -16.76529 -16.72958 -16.26957 -16.06848 -15.80164 -15.51143 -15.07639 -15.01058 -14.61855 -14.50938 -14.27042 -14.17117 -13.52177 -13.46005 -13.35674 -13.07953 -12.98544 -12.91468 -12.50696 -12.21628 -12.16805 -11.97570 -11.88934 -11.77073 -11.74791 -11.52286 -11.43049 -11.40590 -10.79363 -10.70441 -10.04002 -9.72560 -9.56360 -8.30602 -6.38194 0.47332 0.58191 1.38898 1.41729 1.53010 1.64518 2.27202 2.36627 2.98146 3.04490 3.53589 3.72337 3.94847 4.07881 4.12401 4.18184 4.22805 4.29696 4.36345 4.39394 4.41207 4.54240 4.67157 4.73923 4.75914 4.82494 4.85113 4.91923 5.03225 5.09493 5.12990 5.15359 5.20565 5.21610 5.36362 5.39543 5.42992 5.51348 5.56854 5.61469 5.64683 5.67550 5.75871 6.17119 6.21488 6.61618 6.70837 7.26272 7.29997 8.86345 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018164 B = 0.003672 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.151886 B = 7624.128633 C = 8624.819427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 C -0.147 4.147 4 C -0.100 4.100 5 C -0.059 4.059 6 H 0.127 0.873 7 C 0.509 3.491 8 O -0.580 6.580 9 N -0.715 5.715 10 C 0.146 3.854 11 C -0.011 4.011 12 C -0.540 4.540 13 H 0.026 0.974 14 C 0.003 3.997 15 N -0.951 5.951 16 Si 0.960 3.040 17 H -0.265 1.265 18 H -0.287 1.287 19 H -0.235 1.235 20 C -0.074 4.074 21 C -0.103 4.103 22 C -0.137 4.137 23 C -0.127 4.127 24 C -0.128 4.128 25 C -0.120 4.120 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.413 0.587 36 H 0.040 0.960 37 H 0.041 0.959 38 H 0.038 0.962 39 H 0.036 0.964 40 H 0.268 0.732 41 H 0.102 0.898 42 H 0.129 0.871 43 H 0.142 0.858 44 H 0.145 0.855 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.572 10.288 27.112 29.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.106 4.106 3 C -0.204 4.204 4 C -0.138 4.138 5 C -0.080 4.080 6 H 0.145 0.855 7 C 0.296 3.704 8 O -0.460 6.460 9 N -0.367 5.367 10 C 0.022 3.978 11 C -0.049 4.049 12 C -0.579 4.579 13 H 0.045 0.955 14 C -0.194 4.194 15 N -0.591 5.591 16 Si 0.782 3.218 17 H -0.190 1.190 18 H -0.213 1.213 19 H -0.158 1.158 20 C -0.074 4.074 21 C -0.121 4.121 22 C -0.155 4.155 23 C -0.145 4.145 24 C -0.146 4.146 25 C -0.138 4.138 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.250 0.750 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.120 0.880 42 H 0.147 0.853 43 H 0.159 0.841 44 H 0.163 0.837 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.006 9.659 26.911 28.609 hybrid contribution -0.174 0.172 -1.039 1.067 sum -1.179 9.831 25.872 27.702 Atomic orbital electron populations 1.21934 0.94155 1.02255 1.02473 1.21018 0.96663 0.96014 0.96863 1.21829 1.00727 0.95518 1.02331 1.21682 1.01372 0.90614 1.00142 1.20439 1.02703 0.96206 0.88642 0.85540 1.21171 0.80850 0.82382 0.86003 1.90690 1.32918 1.35292 1.87102 1.46051 1.44670 1.37636 1.08360 1.20994 0.98753 0.94892 0.83185 1.19639 0.96461 0.96768 0.92050 1.21263 1.24544 1.17973 0.94099 0.95531 1.26104 0.99042 0.99662 0.94550 1.70081 1.44705 1.43426 1.00931 0.85529 0.78288 0.78464 0.79549 1.18972 1.21250 1.15766 1.19404 0.93587 0.99223 0.95183 1.20975 0.94464 0.99287 0.97391 1.21344 1.00644 0.98921 0.94613 1.21435 0.94750 0.99368 0.98932 1.21414 0.94724 0.99513 0.98973 1.21279 1.00626 0.97863 0.94053 0.91984 0.92044 0.92161 0.91483 0.91855 0.93256 0.92279 0.90076 0.92296 0.75040 0.94133 0.94048 0.94368 0.94613 0.92317 0.88012 0.85269 0.84067 0.83701 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.05 71.98 0.65 -1.16 16 2 C -0.09 -1.27 2.82 -10.80 -0.03 -1.30 16 3 C -0.15 -1.97 9.19 71.98 0.66 -1.31 16 4 C -0.10 -1.83 4.03 30.59 0.12 -1.71 16 5 C -0.06 -1.30 2.25 -12.28 -0.03 -1.33 16 6 H 0.13 2.19 6.00 -2.39 -0.01 2.17 16 7 C 0.51 16.12 6.98 87.66 0.61 16.73 16 8 O -0.58 -23.83 14.86 -3.04 -0.05 -23.88 16 9 N -0.72 -22.34 5.49 -463.08 -2.54 -24.89 16 10 C 0.15 6.01 5.62 86.38 0.49 6.49 16 11 C -0.01 -0.51 4.15 29.85 0.12 -0.38 16 12 C -0.54 -31.03 9.66 25.60 0.25 -30.79 16 13 H 0.03 1.72 7.99 -2.91 -0.02 1.69 16 14 C 0.00 0.20 5.47 84.65 0.46 0.66 16 15 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 16 Si 0.96 42.09 27.47 68.60 1.88 43.97 16 17 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 18 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 19 H -0.23 -9.06 6.54 99.48 0.65 -8.41 16 20 C -0.07 -1.75 3.41 -19.86 -0.07 -1.82 16 21 C -0.10 -2.71 7.79 22.27 0.17 -2.53 16 22 C -0.14 -3.11 10.05 22.27 0.22 -2.88 16 23 C -0.13 -2.42 10.05 22.27 0.22 -2.20 16 24 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 25 C -0.12 -2.41 9.67 22.27 0.22 -2.19 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.69 6.31 -2.38 -0.02 0.67 16 29 H 0.07 1.10 7.25 -2.39 -0.02 1.08 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 1.34 7.76 -2.39 -0.02 1.33 16 34 H 0.06 1.23 7.22 -2.38 -0.02 1.22 16 35 H 0.41 9.94 8.15 -92.71 -0.76 9.18 16 36 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.04 1.59 7.20 -2.39 -0.02 1.57 16 39 H 0.04 1.47 7.57 -2.39 -0.02 1.45 16 40 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 41 H 0.10 2.93 7.32 -2.91 -0.02 2.91 16 42 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 43 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 44 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 45 H 0.14 2.11 7.95 -2.91 -0.02 2.09 16 Total: -1.00 -73.15 362.95 4.04 -69.11 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.15 Total: 22.77 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: 4.30 Total: -27.82 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -2.24 Total: -84.16 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.05 Total: -23.88 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 1.88 Total: 43.97 kcal Total: -73.15 4.04 -69.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342653104.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.204 kcal (2) G-P(sol) polarization free energy of solvation -73.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds