Wall clock time and date at job start Tue Mar 31 2020 06:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46903 * 2 1 4 4 C 1.52999 * 109.46901 * 240.00006 * 2 1 3 5 5 C 1.50703 * 109.46771 * 120.00292 * 2 1 3 6 6 C 1.38234 * 120.00257 * 60.00257 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.27927 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 C 1.50691 * 109.47261 * 270.27992 * 9 8 7 11 11 O 1.21285 * 119.99959 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00271 * 179.97438 * 10 9 8 13 13 C 1.46504 * 120.00023 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46839 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.46956 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00289 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99994 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99792 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00077 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46904 * 90.00045 * 19 17 15 21 21 H 1.48491 * 109.47139 * 210.00354 * 19 17 15 22 22 H 1.48503 * 109.47025 * 330.00331 * 19 17 15 23 23 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 24 24 C 1.38234 * 119.99503 * 240.01857 * 5 2 1 25 25 H 1.09007 * 109.47341 * 299.99607 * 1 2 3 26 26 H 1.08998 * 109.47273 * 59.99893 * 1 2 3 27 27 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46371 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47244 * 300.00125 * 3 2 1 30 30 H 1.08999 * 109.46950 * 60.00346 * 3 2 1 31 31 H 1.09001 * 109.46958 * 300.00030 * 4 2 1 32 32 H 1.08998 * 109.47075 * 59.99980 * 4 2 1 33 33 H 1.08997 * 109.46840 * 179.97438 * 4 2 1 34 34 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 35 35 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 36 36 H 1.09007 * 109.47085 * 30.27493 * 9 8 7 37 37 H 1.08998 * 109.47270 * 150.26989 * 9 8 7 38 38 H 0.97005 * 119.99973 * 0.02562 * 12 10 9 39 39 H 1.08995 * 109.47200 * 299.99967 * 13 12 10 40 40 H 1.09003 * 109.46824 * 60.00824 * 13 12 10 41 41 H 1.09007 * 109.47298 * 300.00202 * 14 13 12 42 42 H 1.08993 * 109.47313 * 60.00288 * 14 13 12 43 43 H 0.97003 * 120.00004 * 179.97438 * 18 17 15 44 44 H 1.08001 * 120.00274 * 179.72697 * 23 8 7 45 45 H 1.07997 * 120.00460 * 0.02562 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.6983 -2.0340 1.4492 7 6 2.1544 -2.6839 2.5808 8 6 2.9534 -2.0137 3.4880 9 6 3.4558 -2.7241 4.7185 10 6 2.4630 -2.5513 5.8388 11 8 1.4476 -1.9136 5.6563 12 7 2.7034 -3.1054 7.0437 13 6 1.7384 -2.9369 8.1331 14 6 2.2484 -3.6582 9.3823 15 6 1.2555 -3.4854 10.5027 16 1 0.3513 -2.9175 10.3402 17 6 1.5013 -4.0524 11.7353 18 7 2.6026 -4.7435 11.9333 19 14 0.2709 -3.8376 13.1243 20 1 -0.7155 -4.9470 13.0877 21 1 0.9858 -3.8536 14.4257 22 1 -0.4357 -2.5414 12.9636 23 6 3.2870 -0.6901 3.2695 24 6 2.8267 -0.0386 2.1406 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1392 33 1 3.1299 -0.7208 -1.2495 34 1 1.0771 -2.5587 0.7384 35 1 1.8898 -3.7166 2.7539 36 1 3.5773 -3.7854 4.5012 37 1 4.4159 -2.3019 5.0152 38 1 3.5156 -3.6151 7.1899 39 1 1.6176 -1.8757 8.3507 40 1 0.7781 -3.3586 7.8363 41 1 2.3695 -4.7195 9.1650 42 1 3.2085 -3.2362 9.6790 43 1 2.7758 -5.1420 12.8005 44 1 3.9077 -0.1652 3.9806 45 1 3.0870 0.9956 1.9701 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342658414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:48 Heat of formation + Delta-G solvation = -47.131037 kcal Electronic energy + Delta-G solvation = -21967.151933 eV Core-core repulsion = 18755.096790 eV Total energy + Delta-G solvation = -3212.055143 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.16369 -39.02243 -36.62713 -34.79626 -32.85677 -32.05270 -31.12076 -29.69043 -27.60706 -27.47990 -27.23144 -24.60763 -22.38072 -22.32316 -20.94751 -20.02791 -19.27815 -16.80261 -16.69918 -16.20263 -15.71715 -15.29563 -14.79829 -14.68189 -14.50357 -14.44972 -13.94982 -13.82858 -13.50316 -13.26989 -13.16737 -12.77857 -12.36574 -12.27455 -12.06703 -11.92145 -11.90048 -11.78672 -11.40430 -11.20392 -11.15893 -11.02816 -10.73880 -10.63745 -10.60522 -10.32048 -9.79143 -9.47428 -9.20819 -8.85801 -8.53132 -8.47519 -8.34104 -6.09813 -4.12540 1.34017 1.46348 3.04994 3.29191 3.35201 3.39325 3.58113 3.98906 4.38945 4.42321 4.52878 4.75245 4.76714 4.90482 5.01439 5.07939 5.26587 5.27202 5.29693 5.35643 5.37609 5.43644 5.51060 5.51373 5.61539 5.62504 5.67175 5.76948 5.82406 6.00494 6.05207 6.07314 6.09668 6.35750 6.35795 6.46608 6.61518 6.64271 6.74736 6.94643 7.03189 7.51761 7.61621 7.88599 8.04454 8.28022 8.69836 8.93559 9.52258 11.01764 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.037247 B = 0.002351 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.549215 B =11908.653888 C =12163.900758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.029 4.029 3 C -0.144 4.144 4 C -0.137 4.137 5 C -0.075 4.075 6 C -0.115 4.115 7 C -0.103 4.103 8 C -0.062 4.062 9 C -0.106 4.106 10 C 0.505 3.495 11 O -0.542 6.542 12 N -0.725 5.725 13 C 0.122 3.878 14 C 0.013 3.987 15 C -0.521 4.521 16 H 0.059 0.941 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.103 4.103 24 C -0.121 4.121 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.397 0.603 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.022 0.978 42 H 0.022 0.978 43 H 0.262 0.738 44 H 0.119 0.881 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.209 7.033 -25.436 26.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 C -0.201 4.201 4 C -0.194 4.194 5 C -0.075 4.075 6 C -0.133 4.133 7 C -0.121 4.121 8 C -0.063 4.063 9 C -0.146 4.146 10 C 0.290 3.710 11 O -0.420 6.420 12 N -0.375 5.375 13 C 0.000 4.000 14 C -0.025 4.025 15 C -0.560 4.560 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.121 4.121 24 C -0.139 4.139 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.231 0.769 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.040 0.960 42 H 0.041 0.959 43 H 0.071 0.929 44 H 0.137 0.863 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.555 7.398 -25.406 26.584 hybrid contribution -0.207 -0.290 1.090 1.147 sum 2.347 7.108 -24.316 25.442 Atomic orbital electron populations 1.21893 0.93733 1.02134 1.01844 1.19488 0.95710 0.94979 0.92772 1.21959 1.01122 0.95088 1.01913 1.21880 1.01159 1.00216 0.96170 1.19734 0.97868 0.94037 0.95887 1.20858 1.00445 0.94379 0.97658 1.20942 0.97075 0.99956 0.94104 1.19297 0.98005 0.94315 0.94668 1.20719 0.99178 1.02441 0.92242 1.20446 0.87325 0.79656 0.83535 1.90698 1.28106 1.40679 1.82520 1.46349 1.25211 1.54219 1.11725 1.21699 0.91157 1.00697 0.86458 1.19323 0.97225 0.95669 0.90271 1.21060 1.05836 1.33486 0.95630 0.92278 1.25003 0.95546 0.95011 0.98776 1.69956 1.24961 1.34601 1.23804 0.86509 0.81092 0.78693 0.81250 1.20549 1.21156 1.19734 1.20971 1.00125 0.93875 0.97143 1.21077 0.98533 0.99871 0.94406 0.92341 0.92512 0.92420 0.92299 0.92517 0.92180 0.92448 0.92516 0.92546 0.86432 0.86335 0.88215 0.88210 0.76928 0.92685 0.92681 0.95961 0.95948 0.92851 0.86336 0.85868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.29 37.16 0.31 -0.85 16 2 C -0.03 -0.25 0.85 -155.66 -0.13 -0.38 16 3 C -0.14 -1.08 7.13 37.16 0.27 -0.81 16 4 C -0.14 -1.00 8.29 37.16 0.31 -0.69 16 5 C -0.08 -0.82 4.76 -104.62 -0.50 -1.31 16 6 C -0.12 -1.31 8.71 -39.58 -0.34 -1.65 16 7 C -0.10 -1.28 9.70 -39.58 -0.38 -1.66 16 8 C -0.06 -0.81 4.37 -104.63 -0.46 -1.27 16 9 C -0.11 -1.28 5.83 -29.04 -0.17 -1.45 16 10 C 0.51 8.54 7.82 -10.99 -0.09 8.46 16 11 O -0.54 -11.45 16.03 5.55 0.09 -11.36 16 12 N -0.72 -12.58 5.56 -60.29 -0.33 -12.92 16 13 C 0.12 2.63 5.61 -4.04 -0.02 2.61 16 14 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 15 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 19 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 C -0.10 -1.28 9.70 -39.58 -0.38 -1.67 16 24 C -0.12 -1.37 8.98 -39.58 -0.36 -1.73 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.48 7.39 -51.93 -0.38 0.10 16 28 H 0.06 0.42 7.51 -51.93 -0.39 0.03 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.48 7.51 -51.93 -0.39 0.09 16 31 H 0.06 0.41 7.39 -51.93 -0.38 0.03 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.12 1.12 7.10 -52.49 -0.37 0.75 16 35 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 36 H 0.10 0.98 8.09 -51.93 -0.42 0.56 16 37 H 0.10 0.98 8.09 -51.93 -0.42 0.56 16 38 H 0.40 5.84 8.47 -40.82 -0.35 5.50 16 39 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 44 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 45 H 0.12 1.17 5.89 -52.49 -0.31 0.86 16 LS Contribution 368.33 15.07 5.55 5.55 Total: -1.00 -32.50 368.33 -9.09 -41.60 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.61 Total: 1.69 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -2.51 Total: -15.58 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.40 Total: -38.35 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.50 -9.09 -41.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342658414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.535 kcal (2) G-P(sol) polarization free energy of solvation -32.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds