Wall clock time and date at job start Tue Mar 31 2020 06:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46903 * 2 1 4 4 C 1.52999 * 109.46901 * 240.00006 * 2 1 3 5 5 C 1.50703 * 109.46771 * 120.00292 * 2 1 3 6 6 C 1.38234 * 120.00257 * 60.00257 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.27927 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 C 1.50691 * 109.47261 * 270.27992 * 9 8 7 11 11 O 1.21285 * 119.99959 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00271 * 179.97438 * 10 9 8 13 13 C 1.46504 * 120.00023 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46839 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.46956 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00289 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99994 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99792 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00077 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46904 * 90.00045 * 19 17 15 21 21 H 1.48491 * 109.47139 * 210.00354 * 19 17 15 22 22 H 1.48503 * 109.47025 * 330.00331 * 19 17 15 23 23 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 24 24 C 1.38234 * 119.99503 * 240.01857 * 5 2 1 25 25 H 1.09007 * 109.47341 * 299.99607 * 1 2 3 26 26 H 1.08998 * 109.47273 * 59.99893 * 1 2 3 27 27 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46371 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47244 * 300.00125 * 3 2 1 30 30 H 1.08999 * 109.46950 * 60.00346 * 3 2 1 31 31 H 1.09001 * 109.46958 * 300.00030 * 4 2 1 32 32 H 1.08998 * 109.47075 * 59.99980 * 4 2 1 33 33 H 1.08997 * 109.46840 * 179.97438 * 4 2 1 34 34 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 35 35 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 36 36 H 1.09007 * 109.47085 * 30.27493 * 9 8 7 37 37 H 1.08998 * 109.47270 * 150.26989 * 9 8 7 38 38 H 0.97005 * 119.99973 * 0.02562 * 12 10 9 39 39 H 1.08995 * 109.47200 * 299.99967 * 13 12 10 40 40 H 1.09003 * 109.46824 * 60.00824 * 13 12 10 41 41 H 1.09007 * 109.47298 * 300.00202 * 14 13 12 42 42 H 1.08993 * 109.47313 * 60.00288 * 14 13 12 43 43 H 0.97003 * 120.00004 * 179.97438 * 18 17 15 44 44 H 1.08001 * 120.00274 * 179.72697 * 23 8 7 45 45 H 1.07997 * 120.00460 * 0.02562 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.6983 -2.0340 1.4492 7 6 2.1544 -2.6839 2.5808 8 6 2.9534 -2.0137 3.4880 9 6 3.4558 -2.7241 4.7185 10 6 2.4630 -2.5513 5.8388 11 8 1.4476 -1.9136 5.6563 12 7 2.7034 -3.1054 7.0437 13 6 1.7384 -2.9369 8.1331 14 6 2.2484 -3.6582 9.3823 15 6 1.2555 -3.4854 10.5027 16 1 0.3513 -2.9175 10.3402 17 6 1.5013 -4.0524 11.7353 18 7 2.6026 -4.7435 11.9333 19 14 0.2709 -3.8376 13.1243 20 1 -0.7155 -4.9470 13.0877 21 1 0.9858 -3.8536 14.4257 22 1 -0.4357 -2.5414 12.9636 23 6 3.2870 -0.6901 3.2695 24 6 2.8267 -0.0386 2.1406 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1392 33 1 3.1299 -0.7208 -1.2495 34 1 1.0771 -2.5587 0.7384 35 1 1.8898 -3.7166 2.7539 36 1 3.5773 -3.7854 4.5012 37 1 4.4159 -2.3019 5.0152 38 1 3.5156 -3.6151 7.1899 39 1 1.6176 -1.8757 8.3507 40 1 0.7781 -3.3586 7.8363 41 1 2.3695 -4.7195 9.1650 42 1 3.2085 -3.2362 9.6790 43 1 2.7758 -5.1420 12.8005 44 1 3.9077 -0.1652 3.9806 45 1 3.0870 0.9956 1.9701 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342658414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:48 Heat of formation + Delta-G solvation = -65.175155 kcal Electronic energy + Delta-G solvation = -21967.934385 eV Core-core repulsion = 18755.096790 eV Total energy + Delta-G solvation = -3212.837594 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.15280 -40.24799 -37.46030 -36.50779 -34.81043 -33.10232 -31.97640 -31.45871 -28.40946 -28.20228 -28.08413 -26.45156 -23.47038 -23.24199 -22.66580 -21.36845 -20.03804 -18.60736 -17.94107 -17.51889 -16.81228 -16.59654 -16.40182 -16.03709 -15.72414 -15.13297 -14.93034 -14.85167 -14.64534 -14.49131 -14.30209 -14.25169 -13.52234 -13.23075 -13.11222 -12.94380 -12.84275 -12.80228 -12.59622 -12.53282 -12.50017 -12.24523 -12.15462 -11.81073 -11.67456 -11.47919 -11.47351 -11.33404 -10.85306 -10.61424 -9.99646 -9.75079 -9.38241 -8.25315 -6.35739 0.43762 0.56830 1.40761 1.41152 1.52700 1.70562 2.28980 2.45968 2.95355 3.09210 3.64837 3.82067 3.82727 4.09903 4.10102 4.14048 4.18549 4.41247 4.43324 4.50227 4.52897 4.57858 4.65243 4.71474 4.79680 4.84697 4.85839 4.91053 5.02257 5.04193 5.07824 5.18522 5.21935 5.26429 5.31318 5.38830 5.45609 5.49981 5.57609 5.61453 5.72686 5.78196 5.78313 6.15551 6.16868 6.67570 6.77432 7.33491 7.33767 8.86384 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.037247 B = 0.002351 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.549215 B =11908.653888 C =12163.900758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.031 4.031 3 C -0.143 4.143 4 C -0.134 4.134 5 C -0.078 4.078 6 C -0.124 4.124 7 C -0.118 4.118 8 C -0.084 4.084 9 C -0.093 4.093 10 C 0.506 3.494 11 O -0.587 6.587 12 N -0.719 5.719 13 C 0.141 3.859 14 C 0.023 3.977 15 C -0.548 4.548 16 H 0.056 0.944 17 C 0.007 3.993 18 N -0.925 5.925 19 Si 0.965 3.035 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.267 1.267 23 C -0.118 4.118 24 C -0.131 4.131 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.132 0.868 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.412 0.588 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.009 0.991 42 H 0.010 0.990 43 H 0.266 0.734 44 H 0.126 0.874 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.277 7.336 -26.557 27.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 C -0.200 4.200 4 C -0.191 4.191 5 C -0.078 4.078 6 C -0.142 4.142 7 C -0.136 4.136 8 C -0.084 4.084 9 C -0.133 4.133 10 C 0.294 3.706 11 O -0.467 6.467 12 N -0.371 5.371 13 C 0.017 3.983 14 C -0.014 4.014 15 C -0.587 4.587 16 H 0.075 0.925 17 C -0.192 4.192 18 N -0.565 5.565 19 Si 0.789 3.211 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.192 1.192 23 C -0.136 4.136 24 C -0.149 4.149 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.248 0.752 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.075 0.925 44 H 0.144 0.856 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.653 7.689 -26.544 27.762 hybrid contribution -0.228 -0.365 1.375 1.441 sum 2.425 7.324 -25.168 26.324 Atomic orbital electron populations 1.21893 0.93652 1.02069 1.01935 1.19559 0.95728 0.95493 0.92274 1.21954 1.01360 0.94423 1.02259 1.21855 1.01035 1.00244 0.95982 1.20072 0.97124 0.94029 0.96546 1.21110 1.00524 0.94818 0.97737 1.21185 0.97255 1.00577 0.94600 1.19472 0.98926 0.94814 0.95208 1.20721 0.98407 1.04381 0.89750 1.21287 0.87453 0.78047 0.83858 1.90677 1.30320 1.42539 1.83206 1.46171 1.25038 1.54699 1.11162 1.21171 0.91437 0.99133 0.86513 1.19129 0.96132 0.95025 0.91136 1.21472 1.06450 1.33746 0.96990 0.92527 1.25872 0.97431 0.94541 1.01345 1.70053 1.26538 1.35226 1.24667 0.85451 0.78739 0.78891 0.78009 1.19720 1.20388 1.19195 1.21215 1.00588 0.94035 0.97811 1.21349 0.98551 1.00695 0.94271 0.93819 0.90834 0.92592 0.91945 0.91122 0.92910 0.92449 0.91074 0.92714 0.84968 0.85638 0.85512 0.85511 0.75190 0.93962 0.93932 0.97222 0.97210 0.92502 0.85628 0.84394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.29 71.98 0.60 -1.53 16 2 C -0.03 -0.47 0.85 -52.93 -0.05 -0.52 16 3 C -0.14 -1.90 7.13 71.98 0.51 -1.39 16 4 C -0.13 -1.69 8.29 71.98 0.60 -1.09 16 5 C -0.08 -1.61 4.76 -19.87 -0.09 -1.71 16 6 C -0.12 -2.71 8.71 22.27 0.19 -2.51 16 7 C -0.12 -2.85 9.70 22.27 0.22 -2.64 16 8 C -0.08 -2.10 4.37 -19.87 -0.09 -2.18 16 9 C -0.09 -2.09 5.83 29.10 0.17 -1.92 16 10 C 0.51 16.78 7.82 87.65 0.69 17.47 16 11 O -0.59 -24.97 16.03 -3.04 -0.05 -25.02 16 12 N -0.72 -24.68 5.56 -463.06 -2.57 -27.25 16 13 C 0.14 6.18 5.61 86.38 0.48 6.67 16 14 C 0.02 1.18 5.09 29.85 0.15 1.33 16 15 C -0.55 -30.95 9.11 25.60 0.23 -30.71 16 16 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 17 C 0.01 0.39 5.46 84.66 0.46 0.85 16 18 N -0.93 -54.31 13.29 21.45 0.28 -54.03 16 19 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 23 C -0.12 -2.87 9.70 22.27 0.22 -2.65 16 24 C -0.13 -2.87 8.98 22.27 0.20 -2.67 16 25 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.05 0.86 7.39 -2.39 -0.02 0.85 16 28 H 0.06 0.78 7.51 -2.38 -0.02 0.76 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 30 H 0.05 0.78 7.51 -2.39 -0.02 0.76 16 31 H 0.06 0.72 7.39 -2.39 -0.02 0.70 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.13 2.37 7.10 -2.91 -0.02 2.35 16 35 H 0.13 2.72 8.06 -2.91 -0.02 2.69 16 36 H 0.13 2.17 8.09 -2.38 -0.02 2.15 16 37 H 0.13 2.17 8.09 -2.39 -0.02 2.15 16 38 H 0.41 11.72 8.47 -92.70 -0.79 10.93 16 39 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 42 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 44 H 0.13 2.72 8.06 -2.91 -0.02 2.69 16 45 H 0.14 2.48 5.89 -2.91 -0.02 2.47 16 Total: -1.00 -69.88 368.33 4.36 -65.53 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.17 Total: 20.07 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: 4.49 Total: -25.21 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -2.29 Total: -81.28 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.05 Total: -25.02 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -69.88 4.36 -65.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342658414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.352 kcal (2) G-P(sol) polarization free energy of solvation -69.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds