Wall clock time and date at job start Tue Mar 31 2020 06:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47467 * 2 1 4 4 C 1.52997 * 109.47056 * 240.00044 * 2 1 3 5 5 C 1.52997 * 109.47298 * 59.99877 * 4 2 1 6 6 C 1.50698 * 109.47569 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99607 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00261 * 179.97438 * 6 5 4 9 9 C 1.46505 * 120.00017 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.46941 * 180.02562 * 9 8 6 11 11 C 1.50704 * 109.46705 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00066 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99789 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99858 * 359.97438 * 13 11 10 15 15 Si 1.86791 * 120.00006 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47306 * 90.00150 * 15 13 11 17 17 H 1.48504 * 109.47459 * 209.99926 * 15 13 11 18 18 H 1.48502 * 109.47373 * 330.00095 * 15 13 11 19 19 C 1.50706 * 109.47428 * 120.00093 * 2 1 3 20 20 C 1.38237 * 119.99761 * 300.00365 * 19 2 1 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 2 22 22 C 1.38234 * 120.00220 * 359.94731 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00191 * 119.97467 * 19 2 1 25 25 H 1.09007 * 109.46732 * 299.99668 * 1 2 3 26 26 H 1.08992 * 109.46964 * 59.99919 * 1 2 3 27 27 H 1.08999 * 109.47201 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47368 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46902 * 300.00766 * 3 2 1 30 30 H 1.09004 * 109.47125 * 59.99963 * 3 2 1 31 31 H 1.09006 * 109.47161 * 180.02562 * 4 2 1 32 32 H 1.08999 * 109.47108 * 300.00048 * 4 2 1 33 33 H 1.08998 * 109.47349 * 300.00486 * 5 4 2 34 34 H 1.09007 * 109.46746 * 60.00319 * 5 4 2 35 35 H 0.96997 * 120.00116 * 0.02562 * 8 6 5 36 36 H 1.09006 * 109.46966 * 300.00047 * 9 8 6 37 37 H 1.08999 * 109.47276 * 59.99975 * 9 8 6 38 38 H 1.08998 * 109.46670 * 299.99178 * 10 9 8 39 39 H 1.08999 * 109.47416 * 59.99742 * 10 9 8 40 40 H 0.97003 * 120.00263 * 179.97438 * 14 13 11 41 41 H 1.08005 * 120.00088 * 359.96779 * 20 19 2 42 42 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 43 43 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 44 44 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 45 45 H 1.07999 * 119.99990 * 0.02562 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 0.0000 -2.4985 6 6 2.0328 -0.7100 -3.7289 7 8 2.7300 -1.6961 -3.6177 8 7 1.7068 -0.2498 -4.9530 9 6 2.1952 -0.9404 -6.1492 10 6 1.6852 -0.2190 -7.3984 11 6 2.1881 -0.9291 -8.6289 12 1 2.8096 -1.8067 -8.5298 13 6 1.8547 -0.4582 -9.8812 14 7 1.0975 0.6102 -10.0018 15 14 2.4787 -1.3378 -11.4064 16 1 1.5017 -2.3805 -11.8109 17 1 2.6428 -0.3584 -12.5105 18 1 3.7875 -1.9740 -11.1104 19 6 2.0324 -0.7104 1.2305 20 6 1.6984 -0.2382 2.4860 21 6 2.1588 -0.8902 3.6147 22 6 2.9523 -2.0150 3.4878 23 6 3.2903 -2.4844 2.2323 24 6 2.8267 -1.8346 1.1036 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6768 1.9564 0.8900 31 1 3.1300 -0.7216 -1.2490 32 1 1.6766 -1.7489 -1.2492 33 1 0.4400 0.0001 -2.4984 34 1 1.8934 1.0277 -2.4984 35 1 1.1489 0.5386 -5.0420 36 1 3.2852 -0.9400 -6.1494 37 1 1.8322 -1.9682 -6.1490 38 1 0.5952 -0.2192 -7.3985 39 1 2.0485 0.8086 -7.3984 40 1 0.8632 0.9418 -10.8828 41 1 1.0778 0.6402 2.5851 42 1 1.8982 -0.5210 4.5956 43 1 3.3117 -2.5245 4.3697 44 1 3.9138 -3.3606 2.1332 45 1 3.0876 -2.2036 0.1227 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342663336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:29 Heat of formation + Delta-G solvation = -46.450176 kcal Electronic energy + Delta-G solvation = -22091.144471 eV Core-core repulsion = 18879.118852 eV Total energy + Delta-G solvation = -3212.025618 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.25146 -39.11453 -36.84843 -34.82321 -32.84263 -31.73252 -31.06838 -29.82416 -29.13268 -27.48669 -25.73036 -24.32011 -22.80196 -22.13116 -20.94128 -20.02745 -18.90583 -17.47043 -16.64069 -16.23487 -15.62074 -15.31620 -15.06611 -14.97812 -14.48649 -14.39721 -14.05281 -13.78523 -13.72653 -13.55855 -12.85635 -12.84093 -12.46168 -12.45889 -12.28230 -11.95604 -11.61196 -11.52725 -11.34892 -11.20468 -11.03281 -10.75471 -10.70717 -10.62150 -10.54407 -10.32198 -9.78012 -9.44092 -9.15446 -9.07533 -8.85676 -8.53046 -8.33964 -6.09871 -4.12617 1.19799 1.24164 3.06136 3.29064 3.35131 3.39235 3.62070 3.71993 4.36267 4.41156 4.53228 4.80884 4.82071 4.88479 4.92276 5.02903 5.17993 5.20409 5.26428 5.27138 5.35840 5.40967 5.46753 5.57598 5.68392 5.70115 5.78382 5.87753 5.89253 5.92848 5.99777 6.20642 6.20674 6.32966 6.35906 6.35967 6.38423 6.51451 6.74770 6.84761 6.95544 7.51688 7.61632 7.88507 8.05435 8.27965 8.70223 8.93510 9.52187 11.01709 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.039633 B = 0.002343 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.312522 B =11945.738549 C =12445.079365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.027 4.027 3 C -0.142 4.142 4 C -0.093 4.093 5 C -0.146 4.146 6 C 0.503 3.497 7 O -0.554 6.554 8 N -0.725 5.725 9 C 0.121 3.879 10 C 0.012 3.988 11 C -0.521 4.521 12 H 0.059 0.941 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.065 4.065 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.129 4.129 23 C -0.119 4.119 24 C -0.119 4.119 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.397 0.603 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.262 0.738 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.875 1.247 26.444 26.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.027 4.027 3 C -0.199 4.199 4 C -0.131 4.131 5 C -0.186 4.186 6 C 0.289 3.711 7 O -0.433 6.433 8 N -0.374 5.374 9 C -0.001 4.001 10 C -0.025 4.025 11 C -0.560 4.560 12 H 0.077 0.923 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.065 4.065 20 C -0.135 4.135 21 C -0.140 4.140 22 C -0.147 4.147 23 C -0.137 4.137 24 C -0.137 4.137 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.230 0.770 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.448 0.651 26.361 26.372 hybrid contribution 0.000 -0.017 -0.952 0.952 sum -0.447 0.634 25.408 25.420 Atomic orbital electron populations 1.21962 0.93616 1.02281 1.02022 1.19556 0.95777 0.95216 0.92182 1.21962 1.01441 0.94453 1.02023 1.21459 1.01476 0.99256 0.90891 1.21830 1.02632 1.00933 0.93156 1.20657 0.80652 0.84845 0.84980 1.90660 1.38674 1.26848 1.87086 1.46364 1.52845 1.31850 1.06388 1.21700 0.98458 0.96243 0.83728 1.19322 0.96904 0.96028 0.90238 1.21061 1.31889 1.12586 0.90479 0.92275 1.25002 0.95037 0.95028 0.99280 1.69954 1.36674 1.22948 1.23743 0.86509 0.79363 0.79341 0.82320 1.20555 1.21165 1.19735 1.19839 0.97077 0.95392 0.94211 1.20971 1.00449 1.00082 0.91992 1.21100 0.98451 0.96131 0.98359 1.21128 0.99108 0.97073 0.97400 1.21191 0.99910 0.99945 0.92614 1.21355 0.97538 0.95444 0.99361 0.92566 0.91733 0.92364 0.92364 0.91727 0.92573 0.90829 0.90832 0.88897 0.88906 0.76956 0.92692 0.92689 0.95979 0.95972 0.92853 0.86284 0.86390 0.86447 0.86183 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 7.93 37.16 0.29 -0.85 16 2 C -0.03 -0.25 0.63 -155.66 -0.10 -0.34 16 3 C -0.14 -1.15 7.93 37.16 0.29 -0.85 16 4 C -0.09 -1.03 2.22 -26.73 -0.06 -1.09 16 5 C -0.15 -1.64 4.99 -27.89 -0.14 -1.78 16 6 C 0.50 8.26 7.83 -10.99 -0.09 8.18 16 7 O -0.55 -11.24 15.98 5.56 0.09 -11.15 16 8 N -0.72 -12.49 5.56 -60.29 -0.33 -12.83 16 9 C 0.12 2.59 5.61 -4.04 -0.02 2.57 16 10 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 11 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 12 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 15 Si 0.90 21.44 29.54 -169.99 -5.02 16.41 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 C -0.07 -0.64 4.76 -104.62 -0.50 -1.14 16 20 C -0.12 -1.03 8.71 -39.58 -0.34 -1.38 16 21 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 22 C -0.13 -1.11 10.05 -39.58 -0.40 -1.51 16 23 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 24 C -0.12 -1.25 8.98 -39.58 -0.36 -1.60 16 25 H 0.06 0.40 7.39 -51.92 -0.38 0.02 16 26 H 0.06 0.48 6.43 -51.93 -0.33 0.14 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.48 6.43 -51.93 -0.33 0.14 16 30 H 0.06 0.40 7.39 -51.93 -0.38 0.02 16 31 H 0.07 0.90 7.47 -51.93 -0.39 0.52 16 32 H 0.07 0.90 7.47 -51.93 -0.39 0.52 16 33 H 0.09 0.89 6.43 -51.93 -0.33 0.55 16 34 H 0.09 0.89 6.43 -51.92 -0.33 0.55 16 35 H 0.40 5.85 8.47 -40.82 -0.35 5.50 16 36 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 41 H 0.12 0.87 7.10 -52.48 -0.37 0.49 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 45 H 0.13 1.41 5.90 -52.49 -0.31 1.10 16 LS Contribution 361.06 15.07 5.44 5.44 Total: -1.00 -31.92 361.06 -9.10 -41.02 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -7.25 Total: 2.38 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -2.76 Total: -15.88 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.40 Total: -38.23 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.92 -9.10 -41.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342663336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.430 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds