Wall clock time and date at job start Tue Mar 31 2020 06:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47467 * 2 1 4 4 C 1.52997 * 109.47056 * 240.00044 * 2 1 3 5 5 C 1.52997 * 109.47298 * 59.99877 * 4 2 1 6 6 C 1.50698 * 109.47569 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99607 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00261 * 179.97438 * 6 5 4 9 9 C 1.46505 * 120.00017 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.46941 * 180.02562 * 9 8 6 11 11 C 1.50704 * 109.46705 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00066 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99789 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99858 * 359.97438 * 13 11 10 15 15 Si 1.86791 * 120.00006 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47306 * 90.00150 * 15 13 11 17 17 H 1.48504 * 109.47459 * 209.99926 * 15 13 11 18 18 H 1.48502 * 109.47373 * 330.00095 * 15 13 11 19 19 C 1.50706 * 109.47428 * 120.00093 * 2 1 3 20 20 C 1.38237 * 119.99761 * 300.00365 * 19 2 1 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 2 22 22 C 1.38234 * 120.00220 * 359.94731 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00191 * 119.97467 * 19 2 1 25 25 H 1.09007 * 109.46732 * 299.99668 * 1 2 3 26 26 H 1.08992 * 109.46964 * 59.99919 * 1 2 3 27 27 H 1.08999 * 109.47201 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47368 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46902 * 300.00766 * 3 2 1 30 30 H 1.09004 * 109.47125 * 59.99963 * 3 2 1 31 31 H 1.09006 * 109.47161 * 180.02562 * 4 2 1 32 32 H 1.08999 * 109.47108 * 300.00048 * 4 2 1 33 33 H 1.08998 * 109.47349 * 300.00486 * 5 4 2 34 34 H 1.09007 * 109.46746 * 60.00319 * 5 4 2 35 35 H 0.96997 * 120.00116 * 0.02562 * 8 6 5 36 36 H 1.09006 * 109.46966 * 300.00047 * 9 8 6 37 37 H 1.08999 * 109.47276 * 59.99975 * 9 8 6 38 38 H 1.08998 * 109.46670 * 299.99178 * 10 9 8 39 39 H 1.08999 * 109.47416 * 59.99742 * 10 9 8 40 40 H 0.97003 * 120.00263 * 179.97438 * 14 13 11 41 41 H 1.08005 * 120.00088 * 359.96779 * 20 19 2 42 42 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 43 43 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 44 44 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 45 45 H 1.07999 * 119.99990 * 0.02562 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 0.0000 -2.4985 6 6 2.0328 -0.7100 -3.7289 7 8 2.7300 -1.6961 -3.6177 8 7 1.7068 -0.2498 -4.9530 9 6 2.1952 -0.9404 -6.1492 10 6 1.6852 -0.2190 -7.3984 11 6 2.1881 -0.9291 -8.6289 12 1 2.8096 -1.8067 -8.5298 13 6 1.8547 -0.4582 -9.8812 14 7 1.0975 0.6102 -10.0018 15 14 2.4787 -1.3378 -11.4064 16 1 1.5017 -2.3805 -11.8109 17 1 2.6428 -0.3584 -12.5105 18 1 3.7875 -1.9740 -11.1104 19 6 2.0324 -0.7104 1.2305 20 6 1.6984 -0.2382 2.4860 21 6 2.1588 -0.8902 3.6147 22 6 2.9523 -2.0150 3.4878 23 6 3.2903 -2.4844 2.2323 24 6 2.8267 -1.8346 1.1036 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6768 1.9564 0.8900 31 1 3.1300 -0.7216 -1.2490 32 1 1.6766 -1.7489 -1.2492 33 1 0.4400 0.0001 -2.4984 34 1 1.8934 1.0277 -2.4984 35 1 1.1489 0.5386 -5.0420 36 1 3.2852 -0.9400 -6.1494 37 1 1.8322 -1.9682 -6.1490 38 1 0.5952 -0.2192 -7.3985 39 1 2.0485 0.8086 -7.3984 40 1 0.8632 0.9418 -10.8828 41 1 1.0778 0.6402 2.5851 42 1 1.8982 -0.5210 4.5956 43 1 3.3117 -2.5245 4.3697 44 1 3.9138 -3.3606 2.1332 45 1 3.0876 -2.2036 0.1227 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342663336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:28 Heat of formation + Delta-G solvation = -64.208530 kcal Electronic energy + Delta-G solvation = -22091.914531 eV Core-core repulsion = 18879.118852 eV Total energy + Delta-G solvation = -3212.795678 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.12569 -40.32720 -37.65332 -36.54025 -34.80691 -32.73389 -31.85723 -31.29548 -30.10225 -28.10363 -27.17665 -25.73165 -23.61106 -23.08318 -22.60885 -21.33205 -19.67153 -18.66403 -18.30116 -17.47368 -16.84173 -16.63250 -16.42670 -15.89848 -15.80877 -15.63083 -15.01207 -14.82859 -14.51902 -14.35803 -14.27355 -14.04287 -13.97822 -13.23381 -13.21912 -13.14474 -12.94334 -12.63421 -12.55834 -12.37583 -12.24288 -12.21029 -12.04915 -11.67545 -11.61832 -11.47089 -11.37304 -11.28670 -10.75427 -10.61197 -9.98504 -9.76900 -9.53700 -8.25103 -6.35504 0.51690 0.54658 1.40960 1.41297 1.52846 1.72135 2.29928 2.47678 2.93473 3.09409 3.62702 3.70055 3.99670 4.01992 4.19064 4.21389 4.33604 4.39122 4.40133 4.41709 4.49740 4.53966 4.64100 4.68698 4.78724 4.85127 4.88605 4.99298 5.05475 5.07874 5.10574 5.21687 5.24433 5.28947 5.31602 5.41264 5.51328 5.51574 5.57866 5.66378 5.68359 5.78490 5.80945 6.15913 6.18283 6.68582 6.77652 7.33717 7.34887 8.86602 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.039633 B = 0.002343 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.312522 B =11945.738549 C =12445.079365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.020 4.020 3 C -0.141 4.141 4 C -0.087 4.087 5 C -0.133 4.133 6 C 0.500 3.500 7 O -0.596 6.596 8 N -0.720 5.720 9 C 0.140 3.860 10 C 0.023 3.977 11 C -0.548 4.548 12 H 0.057 0.943 13 C 0.007 3.993 14 N -0.925 5.925 15 Si 0.965 3.035 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.268 1.268 19 C -0.076 4.076 20 C -0.122 4.122 21 C -0.125 4.125 22 C -0.135 4.135 23 C -0.132 4.132 24 C -0.143 4.143 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.412 0.588 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.009 0.991 39 H 0.009 0.991 40 H 0.266 0.734 41 H 0.138 0.862 42 H 0.142 0.858 43 H 0.138 0.862 44 H 0.127 0.873 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.548 2.179 27.675 27.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.020 4.020 3 C -0.198 4.198 4 C -0.125 4.125 5 C -0.172 4.172 6 C 0.289 3.711 7 O -0.477 6.477 8 N -0.371 5.371 9 C 0.016 3.984 10 C -0.014 4.014 11 C -0.587 4.587 12 H 0.075 0.925 13 C -0.192 4.192 14 N -0.565 5.565 15 Si 0.789 3.211 16 H -0.197 1.197 17 H -0.204 1.204 18 H -0.192 1.192 19 C -0.076 4.076 20 C -0.139 4.139 21 C -0.143 4.143 22 C -0.153 4.153 23 C -0.150 4.150 24 C -0.161 4.161 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.248 0.752 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.075 0.925 41 H 0.156 0.844 42 H 0.160 0.840 43 H 0.155 0.845 44 H 0.145 0.855 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.136 1.603 27.612 27.681 hybrid contribution 0.220 -0.323 -1.273 1.332 sum -0.916 1.280 26.338 26.385 Atomic orbital electron populations 1.21974 0.92538 1.02019 1.03297 1.19495 0.96483 0.95427 0.90595 1.21974 1.00833 0.93722 1.03298 1.21374 1.00327 0.98700 0.92134 1.21867 1.04041 1.01315 0.89974 1.21580 0.79507 0.84282 0.85763 1.90647 1.40537 1.28903 1.87636 1.46202 1.53135 1.32198 1.05579 1.21182 0.97478 0.95520 0.84268 1.19128 0.95855 0.95339 0.91086 1.21474 1.32231 1.12946 0.92019 0.92516 1.25870 0.95106 0.95749 1.02476 1.70051 1.37528 1.24146 1.24741 0.85450 0.78966 0.78323 0.78337 1.19735 1.20398 1.19198 1.19983 0.97152 0.95297 0.95122 1.21214 1.00512 1.00661 0.91563 1.21456 0.97697 0.95732 0.99421 1.21421 0.98963 0.97349 0.97600 1.21390 1.00264 1.00393 0.92957 1.21392 0.98949 0.96595 0.99133 0.91133 0.90627 0.93411 0.93411 0.90620 0.91140 0.92698 0.92700 0.86263 0.86274 0.75241 0.93953 0.93923 0.97240 0.97237 0.92504 0.84389 0.83988 0.84454 0.85461 0.86647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 7.93 71.98 0.57 -1.39 16 2 C -0.02 -0.33 0.63 -52.93 -0.03 -0.36 16 3 C -0.14 -1.96 7.93 71.98 0.57 -1.39 16 4 C -0.09 -1.92 2.22 30.59 0.07 -1.86 16 5 C -0.13 -2.77 4.99 29.85 0.15 -2.62 16 6 C 0.50 16.31 7.83 87.66 0.69 17.00 16 7 O -0.60 -24.78 15.98 -3.03 -0.05 -24.83 16 8 N -0.72 -24.61 5.56 -463.05 -2.57 -27.18 16 9 C 0.14 6.09 5.61 86.38 0.48 6.57 16 10 C 0.02 1.18 5.09 29.85 0.15 1.33 16 11 C -0.55 -30.91 9.11 25.60 0.23 -30.68 16 12 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 13 C 0.01 0.39 5.46 84.66 0.46 0.85 16 14 N -0.93 -54.20 13.29 21.45 0.28 -53.92 16 15 Si 0.96 43.82 29.54 68.60 2.03 45.84 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 17 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 C -0.08 -1.42 4.76 -19.86 -0.09 -1.52 16 20 C -0.12 -1.91 8.71 22.27 0.19 -1.71 16 21 C -0.13 -1.84 10.05 22.27 0.22 -1.61 16 22 C -0.14 -2.16 10.05 22.27 0.22 -1.93 16 23 C -0.13 -2.52 10.05 22.27 0.22 -2.29 16 24 C -0.14 -3.09 8.98 22.27 0.20 -2.89 16 25 H 0.07 0.79 7.39 -2.38 -0.02 0.77 16 26 H 0.07 0.87 6.43 -2.39 -0.02 0.86 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.87 6.43 -2.39 -0.02 0.86 16 30 H 0.07 0.79 7.39 -2.38 -0.02 0.77 16 31 H 0.05 1.40 7.47 -2.38 -0.02 1.38 16 32 H 0.05 1.40 7.47 -2.39 -0.02 1.38 16 33 H 0.12 1.94 6.43 -2.39 -0.02 1.92 16 34 H 0.12 1.94 6.43 -2.38 -0.02 1.92 16 35 H 0.41 11.68 8.47 -92.71 -0.79 10.89 16 36 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.27 14.63 8.31 -92.71 -0.77 13.85 16 41 H 0.14 1.57 7.10 -2.91 -0.02 1.55 16 42 H 0.14 1.35 8.06 -2.91 -0.02 1.32 16 43 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 44 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 45 H 0.12 2.74 5.90 -2.91 -0.02 2.73 16 Total: -1.00 -69.50 361.06 4.19 -65.31 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.19 Total: 19.27 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: 4.31 Total: -24.50 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -2.29 Total: -81.10 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.05 Total: -24.83 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -69.50 4.19 -65.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342663336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.103 kcal (2) G-P(sol) polarization free energy of solvation -69.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds