Wall clock time and date at job start Tue Mar 31 2020 06:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.46805 * 2 1 4 4 C 1.30998 * 119.99677 * 127.20468 * 3 2 1 5 5 C 1.50705 * 120.00499 * 7.21344 * 4 3 2 6 6 C 1.52996 * 109.47195 * 127.20738 * 5 4 3 7 7 N 1.46506 * 109.46845 * 179.97438 * 6 5 4 8 8 C 1.39665 * 120.00022 * 179.97438 * 7 6 5 9 9 C 1.38977 * 120.04599 * 359.72683 * 8 7 6 10 10 C 1.38113 * 120.03698 * 179.76913 * 9 8 7 11 11 C 1.38222 * 120.12667 * 0.50670 * 10 9 8 12 12 C 1.38770 * 120.08971 * 359.74259 * 11 10 9 13 13 O 1.35899 * 120.01933 * 179.97438 * 12 11 10 14 14 C 1.42907 * 116.99702 * 0.03012 * 13 12 11 15 15 C 1.52997 * 109.47100 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.46907 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00456 * 359.97438 * 16 15 14 18 18 C 1.37883 * 120.00027 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00060 * 179.97438 * 18 16 15 20 20 Si 1.86806 * 119.99670 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46753 * 90.00697 * 20 18 16 22 22 H 1.48497 * 109.46855 * 210.00352 * 20 18 16 23 23 H 1.48505 * 109.47103 * 330.00339 * 20 18 16 24 24 C 1.38617 * 119.96811 * 0.02562 * 12 11 10 25 25 H 1.09008 * 109.46911 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47478 * 299.99317 * 1 2 3 27 27 H 1.08993 * 109.47699 * 60.00143 * 1 2 3 28 28 H 1.08992 * 109.47250 * 240.00486 * 2 1 3 29 29 H 1.09004 * 109.47518 * 119.99391 * 2 1 3 30 30 H 1.07993 * 120.00012 * 306.92816 * 3 2 1 31 31 H 1.08005 * 120.00154 * 187.21076 * 4 3 2 32 32 H 1.08998 * 109.46765 * 247.21304 * 5 4 3 33 33 H 1.09000 * 109.46746 * 7.20384 * 5 4 3 34 34 H 1.09002 * 109.47251 * 300.00016 * 6 5 4 35 35 H 1.09000 * 109.47164 * 60.00509 * 6 5 4 36 36 H 0.96998 * 119.99901 * 0.02562 * 7 6 5 37 37 H 1.08009 * 119.98030 * 0.02562 * 9 8 7 38 38 H 1.07996 * 119.93973 * 180.23293 * 10 9 8 39 39 H 1.07991 * 119.95515 * 179.72617 * 11 10 9 40 40 H 1.09002 * 109.46836 * 299.99862 * 14 13 12 41 41 H 1.08994 * 109.47150 * 59.99271 * 14 13 12 42 42 H 1.09004 * 109.46781 * 299.99471 * 15 14 13 43 43 H 1.08994 * 109.47629 * 59.99668 * 15 14 13 44 44 H 0.97000 * 119.99925 * 179.97438 * 19 18 16 45 45 H 1.07996 * 120.06523 * 180.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.8973 1.8098 0.9036 5 6 3.5133 0.8023 1.8400 6 6 5.0375 0.9269 1.7921 7 7 5.6363 -0.0521 2.7028 8 6 7.0249 -0.1290 2.8305 9 6 7.8398 0.7189 2.0899 10 6 9.2129 0.6460 2.2200 11 6 9.7804 -0.2768 3.0784 12 6 8.9719 -1.1295 3.8166 13 8 9.5314 -2.0365 4.6598 14 6 10.9583 -2.0565 4.7371 15 6 11.4002 -3.1334 5.7299 16 6 12.9049 -3.1540 5.8118 17 1 13.4876 -2.4679 5.2152 18 6 13.5376 -4.0495 6.6478 19 7 14.8507 -4.0678 6.7189 20 14 12.5297 -5.2367 7.6794 21 1 12.3059 -6.4899 6.9147 22 1 13.2612 -5.5463 8.9340 23 1 11.2208 -4.6176 8.0094 24 6 7.5932 -1.0563 3.6927 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6824 2.1173 -0.7476 31 1 3.1691 2.8524 0.9776 32 1 3.1651 0.9899 2.8556 33 1 3.2211 -0.2027 1.5356 34 1 5.3856 0.7392 0.7763 35 1 5.3296 1.9319 2.0965 36 1 5.0683 -0.6474 3.2165 37 1 7.3990 1.4381 1.4154 38 1 9.8445 1.3082 1.6465 39 1 10.8545 -0.3344 3.1747 40 1 11.3723 -2.2769 3.7532 41 1 11.3176 -1.0838 5.0728 42 1 10.9862 -2.9125 6.7137 43 1 11.0409 -4.1063 5.3946 44 1 15.2958 -4.6975 7.3073 45 1 6.9625 -1.7189 4.2667 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342671163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:01 Heat of formation + Delta-G solvation = -13.306071 kcal Electronic energy + Delta-G solvation = -21194.218979 eV Core-core repulsion = 17983.630597 eV Total energy + Delta-G solvation = -3210.588382 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.80507 -38.18196 -37.16630 -35.12311 -33.29644 -32.33629 -31.06988 -30.09252 -29.06928 -27.51297 -25.19118 -23.86587 -23.51841 -22.40229 -21.16801 -20.27431 -18.88353 -17.91668 -16.74424 -16.60912 -16.05090 -15.60609 -15.42908 -15.36268 -15.00262 -14.76485 -14.25370 -14.14753 -13.98583 -13.39507 -13.03837 -12.91606 -12.65471 -12.53615 -12.44738 -12.31519 -11.99699 -11.61204 -11.56892 -11.40436 -11.27896 -10.88041 -10.77529 -10.67077 -10.13711 -10.04419 -9.85387 -9.72606 -9.40728 -9.31430 -8.60352 -7.98692 -7.35242 -6.11432 -4.11999 1.69729 1.74521 1.85132 3.22659 3.30112 3.37205 3.43019 3.96253 4.10324 4.30050 4.41024 4.58473 4.61624 4.73119 4.81755 4.89419 5.07853 5.13912 5.18906 5.22789 5.25993 5.35995 5.46645 5.52980 5.54437 5.58786 5.65097 5.67098 5.75162 5.76362 5.98968 6.01541 6.09193 6.22030 6.38035 6.39984 6.48382 6.61168 6.73987 6.85033 7.10291 7.26874 7.37336 7.62915 7.67486 8.01865 8.41423 8.89762 9.49035 11.01120 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.032163 B = 0.002110 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.349295 B =13266.967932 C =13954.186594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.154 4.154 4 C -0.157 4.157 5 C -0.113 4.113 6 C 0.134 3.866 7 N -0.751 5.751 8 C 0.246 3.754 9 C -0.242 4.242 10 C -0.036 4.036 11 C -0.263 4.263 12 C 0.186 3.814 13 O -0.320 6.320 14 C 0.073 3.927 15 C -0.009 4.009 16 C -0.526 4.526 17 H 0.075 0.925 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.880 3.120 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.263 1.263 24 C -0.238 4.238 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.398 0.602 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.128 0.872 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.027 0.973 43 H 0.023 0.977 44 H 0.265 0.735 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.553 11.613 -13.263 31.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C -0.172 4.172 4 C -0.176 4.176 5 C -0.150 4.150 6 C 0.010 3.990 7 N -0.381 5.381 8 C 0.143 3.857 9 C -0.265 4.265 10 C -0.055 4.055 11 C -0.283 4.283 12 C 0.138 3.862 13 O -0.233 6.233 14 C -0.001 4.001 15 C -0.047 4.047 16 C -0.564 4.564 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.707 3.293 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.188 1.188 24 C -0.261 4.261 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.232 0.768 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.146 0.854 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.041 0.959 44 H 0.075 0.925 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -26.522 11.521 -13.176 31.777 hybrid contribution -0.348 -0.640 0.608 0.948 sum -26.870 10.882 -12.569 31.597 Atomic orbital electron populations 1.21696 0.95054 1.01744 1.01920 1.20853 0.96189 0.94720 1.02892 1.22852 0.98378 0.97596 0.98390 1.22620 0.98540 0.99195 0.97208 1.21025 0.94341 0.99643 0.99959 1.21172 0.91738 0.92477 0.93634 1.44560 1.03055 1.41539 1.48996 1.17347 0.83221 0.92648 0.92468 1.20411 0.93486 1.05368 1.07224 1.20638 0.94028 0.95643 0.95214 1.21168 1.00330 1.02229 1.04601 1.18771 0.91817 0.87579 0.87992 1.86094 1.25275 1.53268 1.58702 1.23063 0.74880 1.01211 1.00912 1.19588 0.97243 0.93513 0.94337 1.20857 0.88653 1.20666 1.26228 0.90716 1.24933 0.94825 0.96918 0.96343 1.69892 1.07857 1.37218 1.38653 0.86759 0.80874 0.81629 0.80019 1.20077 1.21197 1.18754 1.19650 0.92568 1.05980 1.07929 0.92510 0.92664 0.92701 0.91167 0.90547 0.87173 0.86982 0.90585 0.89932 0.92261 0.92310 0.76785 0.86657 0.86250 0.85437 0.92476 0.92451 0.95453 0.95884 0.92482 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.89 37.16 0.37 -0.35 16 2 C -0.11 -0.60 6.03 -27.88 -0.17 -0.77 16 3 C -0.15 -0.89 9.51 -36.02 -0.34 -1.24 16 4 C -0.16 -0.93 9.51 -36.02 -0.34 -1.28 16 5 C -0.11 -0.69 5.42 -27.88 -0.15 -0.84 16 6 C 0.13 1.05 4.89 -4.04 -0.02 1.03 16 7 N -0.75 -7.44 5.73 -58.65 -0.34 -7.78 16 8 C 0.25 3.24 6.65 -83.81 -0.56 2.69 16 9 C -0.24 -3.12 9.31 -39.35 -0.37 -3.49 16 10 C -0.04 -0.50 10.03 -39.63 -0.40 -0.90 16 11 C -0.26 -4.26 9.04 -39.39 -0.36 -4.62 16 12 C 0.19 3.30 6.68 -39.24 -0.26 3.03 16 13 O -0.32 -6.50 10.13 -19.42 -0.20 -6.70 16 14 C 0.07 1.56 4.68 37.16 0.17 1.73 16 15 C -0.01 -0.23 4.41 -27.88 -0.12 -0.35 16 16 C -0.53 -15.01 9.66 -34.44 -0.33 -15.34 16 17 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 18 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 19 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 20 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 24 C -0.24 -3.66 9.83 -39.24 -0.39 -4.05 16 25 H 0.06 0.25 8.14 -51.92 -0.42 -0.17 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.42 5.29 -51.93 -0.27 0.15 16 30 H 0.11 0.55 8.06 -52.49 -0.42 0.13 16 31 H 0.11 0.59 8.06 -52.48 -0.42 0.17 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.49 5.29 -51.93 -0.27 0.22 16 34 H 0.06 0.49 7.94 -51.93 -0.41 0.08 16 35 H 0.06 0.47 7.96 -51.93 -0.41 0.05 16 36 H 0.40 3.38 8.48 -40.82 -0.35 3.04 16 37 H 0.12 1.24 6.73 -52.48 -0.35 0.89 16 38 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.13 2.06 6.29 -52.49 -0.33 1.73 16 40 H 0.06 1.17 7.66 -51.93 -0.40 0.77 16 41 H 0.06 1.18 7.66 -51.93 -0.40 0.78 16 42 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 43 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 44 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 366.37 15.07 5.52 5.52 Total: -1.00 -31.16 366.37 -9.63 -40.78 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.36 Total: 0.50 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -3.36 Total: -22.74 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.44 Total: -34.47 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: -0.20 Total: -6.70 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.16 -9.63 -40.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342671163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.476 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds