Wall clock time and date at job start Tue Mar 31 2020 06:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.46805 * 2 1 4 4 C 1.30998 * 119.99677 * 127.20468 * 3 2 1 5 5 C 1.50705 * 120.00499 * 7.21344 * 4 3 2 6 6 C 1.52996 * 109.47195 * 127.20738 * 5 4 3 7 7 N 1.46506 * 109.46845 * 179.97438 * 6 5 4 8 8 C 1.39665 * 120.00022 * 179.97438 * 7 6 5 9 9 C 1.38977 * 120.04599 * 359.72683 * 8 7 6 10 10 C 1.38113 * 120.03698 * 179.76913 * 9 8 7 11 11 C 1.38222 * 120.12667 * 0.50670 * 10 9 8 12 12 C 1.38770 * 120.08971 * 359.74259 * 11 10 9 13 13 O 1.35899 * 120.01933 * 179.97438 * 12 11 10 14 14 C 1.42907 * 116.99702 * 0.03012 * 13 12 11 15 15 C 1.52997 * 109.47100 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.46907 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00456 * 359.97438 * 16 15 14 18 18 C 1.37883 * 120.00027 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00060 * 179.97438 * 18 16 15 20 20 Si 1.86806 * 119.99670 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46753 * 90.00697 * 20 18 16 22 22 H 1.48497 * 109.46855 * 210.00352 * 20 18 16 23 23 H 1.48505 * 109.47103 * 330.00339 * 20 18 16 24 24 C 1.38617 * 119.96811 * 0.02562 * 12 11 10 25 25 H 1.09008 * 109.46911 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47478 * 299.99317 * 1 2 3 27 27 H 1.08993 * 109.47699 * 60.00143 * 1 2 3 28 28 H 1.08992 * 109.47250 * 240.00486 * 2 1 3 29 29 H 1.09004 * 109.47518 * 119.99391 * 2 1 3 30 30 H 1.07993 * 120.00012 * 306.92816 * 3 2 1 31 31 H 1.08005 * 120.00154 * 187.21076 * 4 3 2 32 32 H 1.08998 * 109.46765 * 247.21304 * 5 4 3 33 33 H 1.09000 * 109.46746 * 7.20384 * 5 4 3 34 34 H 1.09002 * 109.47251 * 300.00016 * 6 5 4 35 35 H 1.09000 * 109.47164 * 60.00509 * 6 5 4 36 36 H 0.96998 * 119.99901 * 0.02562 * 7 6 5 37 37 H 1.08009 * 119.98030 * 0.02562 * 9 8 7 38 38 H 1.07996 * 119.93973 * 180.23293 * 10 9 8 39 39 H 1.07991 * 119.95515 * 179.72617 * 11 10 9 40 40 H 1.09002 * 109.46836 * 299.99862 * 14 13 12 41 41 H 1.08994 * 109.47150 * 59.99271 * 14 13 12 42 42 H 1.09004 * 109.46781 * 299.99471 * 15 14 13 43 43 H 1.08994 * 109.47629 * 59.99668 * 15 14 13 44 44 H 0.97000 * 119.99925 * 179.97438 * 19 18 16 45 45 H 1.07996 * 120.06523 * 180.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.8973 1.8098 0.9036 5 6 3.5133 0.8023 1.8400 6 6 5.0375 0.9269 1.7921 7 7 5.6363 -0.0521 2.7028 8 6 7.0249 -0.1290 2.8305 9 6 7.8398 0.7189 2.0899 10 6 9.2129 0.6460 2.2200 11 6 9.7804 -0.2768 3.0784 12 6 8.9719 -1.1295 3.8166 13 8 9.5314 -2.0365 4.6598 14 6 10.9583 -2.0565 4.7371 15 6 11.4002 -3.1334 5.7299 16 6 12.9049 -3.1540 5.8118 17 1 13.4876 -2.4679 5.2152 18 6 13.5376 -4.0495 6.6478 19 7 14.8507 -4.0678 6.7189 20 14 12.5297 -5.2367 7.6794 21 1 12.3059 -6.4899 6.9147 22 1 13.2612 -5.5463 8.9340 23 1 11.2208 -4.6176 8.0094 24 6 7.5932 -1.0563 3.6927 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6824 2.1173 -0.7476 31 1 3.1691 2.8524 0.9776 32 1 3.1651 0.9899 2.8556 33 1 3.2211 -0.2027 1.5356 34 1 5.3856 0.7392 0.7763 35 1 5.3296 1.9319 2.0965 36 1 5.0683 -0.6474 3.2165 37 1 7.3990 1.4381 1.4154 38 1 9.8445 1.3082 1.6465 39 1 10.8545 -0.3344 3.1747 40 1 11.3723 -2.2769 3.7532 41 1 11.3176 -1.0838 5.0728 42 1 10.9862 -2.9125 6.7137 43 1 11.0409 -4.1063 5.3946 44 1 15.2958 -4.6975 7.3073 45 1 6.9625 -1.7189 4.2667 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342671163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:00 Heat of formation + Delta-G solvation = -30.085511 kcal Electronic energy + Delta-G solvation = -21194.946590 eV Core-core repulsion = 17983.630597 eV Total energy + Delta-G solvation = -3211.315993 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.03828 -39.23873 -37.88668 -36.02391 -35.34093 -32.96669 -32.89775 -31.15507 -30.12061 -28.35070 -27.02199 -24.54497 -24.09521 -23.64651 -22.57229 -21.72537 -19.64879 -19.14801 -18.51589 -17.42090 -16.96817 -16.89629 -16.65550 -16.54877 -16.25826 -15.69961 -15.52948 -14.89553 -14.70446 -14.62734 -14.45187 -14.32545 -14.06192 -13.46286 -13.30603 -13.14027 -12.95219 -12.80665 -12.60976 -12.45101 -12.31362 -12.17841 -11.96069 -11.81307 -11.74578 -11.60185 -11.40809 -11.25917 -10.82841 -10.80867 -9.84441 -9.22478 -8.34950 -8.34916 -6.41692 0.56694 0.68816 1.30362 1.35931 1.37301 1.50342 2.19125 2.33299 2.71884 2.96035 2.99925 3.85798 3.98697 4.05615 4.19210 4.21467 4.24178 4.24917 4.29403 4.33052 4.38547 4.49510 4.51026 4.64063 4.66725 4.70437 4.76017 4.79692 4.93808 5.03007 5.11257 5.13099 5.19083 5.24871 5.30536 5.32013 5.36914 5.49958 5.51743 5.64468 5.73419 5.79713 5.96804 6.16373 6.39199 6.58559 6.63804 6.82742 7.23405 8.80811 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.032163 B = 0.002110 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.349295 B =13266.967932 C =13954.186594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C -0.157 4.157 4 C -0.163 4.163 5 C -0.105 4.105 6 C 0.133 3.867 7 N -0.741 5.741 8 C 0.251 3.749 9 C -0.237 4.237 10 C -0.034 4.034 11 C -0.283 4.283 12 C 0.153 3.847 13 O -0.336 6.336 14 C 0.088 3.912 15 C -0.006 4.006 16 C -0.538 4.538 17 H 0.042 0.958 18 C 0.014 3.986 19 N -0.942 5.942 20 Si 0.949 3.051 21 H -0.264 1.264 22 H -0.278 1.278 23 H -0.251 1.251 24 C -0.249 4.249 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.405 0.595 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.118 0.882 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.270 0.730 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.293 12.152 -13.904 34.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.175 4.175 4 C -0.182 4.182 5 C -0.142 4.142 6 C 0.009 3.991 7 N -0.371 5.371 8 C 0.146 3.854 9 C -0.260 4.260 10 C -0.053 4.053 11 C -0.304 4.304 12 C 0.107 3.893 13 O -0.250 6.250 14 C 0.014 3.986 15 C -0.043 4.043 16 C -0.576 4.576 17 H 0.060 0.940 18 C -0.184 4.184 19 N -0.581 5.581 20 Si 0.772 3.228 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.175 1.175 24 C -0.272 4.272 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.241 0.759 37 H 0.161 0.839 38 H 0.164 0.836 39 H 0.136 0.864 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.045 0.955 44 H 0.079 0.921 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -29.312 12.078 -13.837 34.591 hybrid contribution 0.406 -0.673 0.670 1.033 sum -28.906 11.405 -13.167 33.749 Atomic orbital electron populations 1.21692 0.94697 1.01996 1.01983 1.20884 0.96549 0.94648 1.02851 1.22992 0.98262 0.97840 0.98415 1.22681 0.98785 0.99502 0.97222 1.20949 0.93053 0.99938 1.00308 1.21307 0.92709 0.92002 0.93058 1.44689 1.01885 1.41675 1.48825 1.17439 0.84743 0.91728 0.91485 1.20755 0.93164 1.05213 1.06857 1.20949 0.94925 0.95005 0.94390 1.21222 0.99918 1.03392 1.05881 1.19086 0.92897 0.88337 0.89004 1.86002 1.23968 1.54817 1.60207 1.22650 0.76163 0.99939 0.99888 1.19446 0.94659 0.94893 0.95347 1.21121 0.90701 1.20032 1.25749 0.94017 1.25880 0.95954 0.98887 0.97701 1.70024 1.09762 1.38489 1.39859 0.85674 0.79527 0.79256 0.78344 1.18908 1.20340 1.17485 1.19782 0.91747 1.06913 1.08786 0.92203 0.92858 0.92382 0.91197 0.90599 0.86514 0.86300 0.90247 0.89723 0.92153 0.91815 0.75925 0.83944 0.83599 0.86395 0.92501 0.92523 0.95428 0.95513 0.92082 0.85389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 71.98 0.71 -0.49 16 2 C -0.11 -1.04 6.03 29.85 0.18 -0.86 16 3 C -0.16 -1.50 9.51 25.65 0.24 -1.25 16 4 C -0.16 -1.56 9.51 25.65 0.24 -1.31 16 5 C -0.11 -1.03 5.42 29.85 0.16 -0.86 16 6 C 0.13 1.69 4.89 86.38 0.42 2.11 16 7 N -0.74 -12.76 5.73 -339.46 -1.95 -14.71 16 8 C 0.25 6.10 6.65 38.20 0.25 6.35 16 9 C -0.24 -5.47 9.31 22.42 0.21 -5.27 16 10 C -0.03 -0.87 10.03 22.24 0.22 -0.65 16 11 C -0.28 -9.18 9.04 22.39 0.20 -8.98 16 12 C 0.15 5.44 6.68 22.49 0.15 5.59 16 13 O -0.34 -13.80 10.13 -92.41 -0.94 -14.73 16 14 C 0.09 3.83 4.68 71.98 0.34 4.17 16 15 C -0.01 -0.30 4.41 29.85 0.13 -0.16 16 16 C -0.54 -31.51 9.66 25.60 0.25 -31.26 16 17 H 0.04 2.63 7.99 -2.91 -0.02 2.61 16 18 C 0.01 0.82 5.47 84.66 0.46 1.29 16 19 N -0.94 -58.79 13.96 21.45 0.30 -58.49 16 20 Si 0.95 44.76 27.47 68.60 1.88 46.64 16 21 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 23 H -0.25 -11.28 6.54 99.48 0.65 -10.63 16 24 C -0.25 -7.44 9.83 22.49 0.22 -7.22 16 25 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 26 H 0.05 0.45 8.14 -2.39 -0.02 0.44 16 27 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.08 0.70 5.29 -2.39 -0.01 0.68 16 30 H 0.12 0.94 8.06 -2.91 -0.02 0.92 16 31 H 0.12 0.96 8.06 -2.91 -0.02 0.94 16 32 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.08 0.81 5.29 -2.39 -0.01 0.79 16 34 H 0.06 0.80 7.94 -2.39 -0.02 0.78 16 35 H 0.06 0.79 7.96 -2.39 -0.02 0.77 16 36 H 0.41 5.92 8.48 -92.71 -0.79 5.13 16 37 H 0.14 2.50 6.73 -2.91 -0.02 2.48 16 38 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 39 H 0.12 3.93 6.29 -2.92 -0.02 3.92 16 40 H 0.06 2.42 7.66 -2.39 -0.02 2.40 16 41 H 0.06 2.41 7.66 -2.39 -0.02 2.40 16 42 H 0.03 1.36 7.20 -2.39 -0.02 1.34 16 43 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 44 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 45 H 0.13 3.58 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -67.41 366.37 3.82 -63.59 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.12 Total: 16.52 kcal Atomic # 6 Polarization: -43.23 SS G_CDS: 4.40 Total: -38.82 kcal Atomic # 7 Polarization: -71.55 SS G_CDS: -1.65 Total: -73.20 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.94 Total: -14.73 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.88 Total: 46.64 kcal Total: -67.41 3.82 -63.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342671163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.503 kcal (2) G-P(sol) polarization free energy of solvation -67.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds