Wall clock time and date at job start Tue Mar 31 2020 05:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00034 * 2 1 4 4 C 1.53000 * 109.52634 * 300.13155 * 3 2 1 5 5 C 1.53117 * 109.52439 * 180.02562 * 3 2 1 6 6 C 1.53034 * 109.27915 * 297.75389 * 5 3 2 7 7 N 1.46848 * 109.52290 * 300.82083 * 6 5 3 8 8 C 1.46904 * 110.99896 * 185.83764 * 7 6 5 9 9 C 1.50703 * 109.46828 * 170.00007 * 8 7 6 10 10 C 1.38629 * 119.74940 * 90.00451 * 9 8 7 11 11 C 1.37624 * 120.24650 * 179.97438 * 10 9 8 12 12 C 1.40709 * 119.74609 * 359.97438 * 11 10 9 13 13 C 1.41396 * 120.24474 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00017 * 155.57121 * 13 12 11 15 15 C 1.39945 * 119.99955 * 335.30142 * 13 12 11 16 16 N 1.30820 * 120.00086 * 342.55190 * 15 13 12 17 17 Si 1.86803 * 119.99862 * 162.55208 * 15 13 12 18 18 H 1.48497 * 109.47547 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.46828 * 119.99994 * 17 15 13 20 20 H 1.48502 * 109.46817 * 239.99969 * 17 15 13 21 21 C 1.40718 * 119.51124 * 0.26996 * 12 11 10 22 22 C 1.37611 * 119.74343 * 359.47505 * 21 12 11 23 23 C 1.46842 * 111.19765 * 61.74367 * 7 6 5 24 24 C 1.53041 * 109.52493 * 298.25400 * 23 7 6 25 25 H 1.09001 * 109.47147 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47501 * 299.99756 * 1 2 3 27 27 H 1.09003 * 109.47202 * 60.00037 * 1 2 3 28 28 H 1.09003 * 109.46844 * 299.86959 * 4 3 2 29 29 H 1.09002 * 109.47186 * 59.86627 * 4 3 2 30 30 H 1.08996 * 109.47044 * 179.87159 * 4 3 2 31 31 H 1.08996 * 109.50526 * 177.81446 * 5 3 2 32 32 H 1.08999 * 109.53440 * 57.71179 * 5 3 2 33 33 H 1.09003 * 109.46816 * 180.80436 * 6 5 3 34 34 H 1.09002 * 109.46391 * 60.83368 * 6 5 3 35 35 H 1.09000 * 109.46991 * 50.00442 * 8 7 6 36 36 H 1.08998 * 109.47398 * 289.99922 * 8 7 6 37 37 H 1.07992 * 119.88021 * 359.97017 * 10 9 8 38 38 H 1.08005 * 120.12321 * 179.97438 * 11 10 9 39 39 H 0.96997 * 120.00216 * 179.97438 * 16 15 13 40 40 H 1.08002 * 120.12485 * 179.70167 * 21 12 11 41 41 H 1.08003 * 119.87558 * 180.27307 * 22 21 12 42 42 H 1.08995 * 109.46909 * 58.27651 * 23 7 6 43 43 H 1.09007 * 109.46421 * 178.24372 * 23 7 6 44 44 H 1.08997 * 109.50437 * 299.24547 * 24 23 7 45 45 H 1.08991 * 109.53735 * 179.14239 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5570 2.0671 -1.2472 5 6 3.5368 1.1860 -0.0006 6 6 3.9885 0.4757 1.2774 7 7 3.5400 1.2400 2.4483 8 6 4.0734 0.6629 3.6895 9 6 3.8019 1.6013 4.8370 10 6 2.6245 1.4824 5.5591 11 6 2.3664 2.3336 6.6093 12 6 3.3031 3.3270 6.9492 13 6 3.0489 4.2069 8.0265 14 1 3.8709 4.6833 8.5402 15 6 1.7320 4.4647 8.4236 16 7 0.7394 4.1849 7.6187 17 14 1.3915 5.2085 10.1030 18 1 2.6751 5.4290 10.8163 19 1 0.6880 6.5056 9.9364 20 1 0.5405 4.2815 10.8915 21 6 4.4925 3.4417 6.2059 22 6 4.7320 2.5763 5.1632 23 6 2.0749 1.3275 2.4958 24 6 1.5659 2.0633 1.2542 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8788 1.5287 -2.1386 29 1 0.4702 2.1516 -1.2463 30 1 1.9990 3.0634 -1.2451 31 1 3.9797 2.1811 -0.0398 32 1 3.8569 0.6106 -0.8693 33 1 5.0760 0.4017 1.2868 34 1 3.5563 -0.5245 1.3092 35 1 5.1484 0.5141 3.5884 36 1 3.5904 -0.2952 3.8817 37 1 1.9071 0.7191 5.2966 38 1 1.4483 2.2395 7.1703 39 1 -0.1734 4.3632 7.8940 40 1 5.2161 4.2037 6.4552 41 1 5.6461 2.6596 4.5941 42 1 1.6516 0.3234 2.5220 43 1 1.7724 1.8723 3.3902 44 1 1.9779 3.0722 1.2347 45 1 0.4776 2.1150 1.2817 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343691676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:13 Heat of formation + Delta-G solvation = -32.849906 kcal Electronic energy + Delta-G solvation = -23500.798957 eV Core-core repulsion = 20289.363090 eV Total energy + Delta-G solvation = -3211.435866 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.90792 -37.84510 -36.41032 -33.90825 -32.83638 -30.80919 -30.31408 -29.24367 -28.24627 -26.87177 -25.79424 -23.49329 -22.85587 -21.38394 -20.79919 -19.71497 -19.40179 -17.25899 -16.30602 -15.55015 -15.36770 -15.31279 -15.01695 -14.75239 -14.39113 -13.87889 -13.50735 -13.40941 -13.23497 -12.73276 -12.53400 -12.43629 -12.17269 -12.06523 -11.89764 -11.80416 -11.49173 -11.26378 -11.15915 -10.99573 -10.90222 -10.88177 -10.60012 -10.41303 -10.30110 -9.98357 -9.55884 -9.38962 -9.30718 -9.10242 -7.80737 -7.38157 -7.23722 -6.73106 -4.31502 2.75935 3.08104 3.11970 3.13807 3.19734 3.77502 3.95033 4.38072 4.69504 4.77763 4.81289 4.95046 5.25556 5.34967 5.37570 5.43569 5.52973 5.60772 5.64409 5.68981 5.74976 5.80513 5.82212 5.90431 5.97855 6.04286 6.10922 6.19404 6.26831 6.32306 6.39102 6.45417 6.47342 6.52616 6.98405 7.10864 7.26049 7.31222 7.42109 7.58463 7.61272 7.66765 7.93980 8.09453 8.19305 8.34527 8.68009 8.93470 9.01918 10.21220 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023746 B = 0.003727 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.876879 B = 7511.548561 C = 8126.461339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.378 6.378 3 C 0.111 3.889 4 C -0.176 4.176 5 C -0.097 4.097 6 C 0.056 3.944 7 N -0.531 5.531 8 C 0.121 3.879 9 C -0.205 4.205 10 C -0.095 4.095 11 C -0.165 4.165 12 C 0.111 3.889 13 C -0.464 4.464 14 H 0.077 0.923 15 C 0.077 3.923 16 N -0.795 5.795 17 Si 0.905 3.095 18 H -0.261 1.261 19 H -0.275 1.275 20 H -0.272 1.272 21 C -0.227 4.227 22 C -0.070 4.070 23 C 0.061 3.939 24 C -0.139 4.139 25 H 0.080 0.920 26 H 0.045 0.955 27 H 0.040 0.960 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.035 0.965 35 H 0.063 0.937 36 H 0.022 0.978 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.279 0.721 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.028 0.972 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.712 -5.407 -13.086 14.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.297 6.297 3 C 0.072 3.928 4 C -0.233 4.233 5 C -0.135 4.135 6 C -0.072 4.072 7 N -0.256 5.256 8 C -0.005 4.005 9 C -0.206 4.206 10 C -0.114 4.114 11 C -0.185 4.185 12 C 0.109 3.891 13 C -0.494 4.494 14 H 0.095 0.905 15 C -0.141 4.141 16 N -0.420 5.420 17 Si 0.730 3.270 18 H -0.184 1.184 19 H -0.200 1.200 20 H -0.198 1.198 21 C -0.247 4.247 22 C -0.089 4.089 23 C -0.067 4.067 24 C -0.177 4.177 25 H 0.098 0.902 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.040 0.960 37 H 0.100 0.900 38 H 0.134 0.866 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.046 0.954 43 H 0.108 0.892 44 H 0.099 0.901 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.668 -5.082 -13.158 14.121 hybrid contribution -0.935 -0.139 0.740 1.201 sum -1.603 -5.221 -12.418 13.566 Atomic orbital electron populations 1.22746 0.81990 1.02232 1.00166 1.87937 1.19136 1.27685 1.94969 1.21597 0.94139 0.83074 0.93973 1.22388 1.01680 1.01080 0.98158 1.21567 0.92190 1.01990 0.97735 1.21987 0.99547 0.95230 0.90431 1.62059 1.09532 1.51917 1.02050 1.20706 0.98228 0.94062 0.87544 1.18871 0.97869 1.03124 1.00754 1.20515 0.95361 0.98673 0.96873 1.21273 1.01409 0.96346 0.99445 1.17612 0.90568 0.90335 0.90584 1.19622 0.92419 1.23616 1.13698 0.90521 1.25886 0.95999 0.94164 0.98023 1.69836 1.00544 1.37098 1.34543 0.86312 0.79386 0.78971 0.82347 1.18420 1.20048 1.19766 1.20972 1.00838 1.02764 1.00129 1.20319 0.97077 0.95015 0.96475 1.21990 0.87668 0.98655 0.98392 1.22175 1.00373 1.00577 0.94563 0.90152 0.93625 0.94109 0.92062 0.92348 0.91339 0.89895 0.91359 0.91300 0.94708 0.91823 0.95981 0.90002 0.86617 0.91059 0.89184 0.89533 0.95415 0.89172 0.90137 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.22 101.05 1.03 1.30 16 2 O -0.38 -5.06 9.20 -35.23 -0.32 -5.39 16 3 C 0.11 1.40 0.72 -90.50 -0.06 1.34 16 4 C -0.18 -1.81 8.27 37.16 0.31 -1.50 16 5 C -0.10 -1.21 5.11 -26.65 -0.14 -1.35 16 6 C 0.06 0.80 5.33 -3.83 -0.02 0.78 16 7 N -0.53 -9.05 4.65 -236.11 -1.10 -10.14 16 8 C 0.12 2.21 5.11 -4.97 -0.03 2.18 16 9 C -0.20 -4.46 4.91 -104.33 -0.51 -4.97 16 10 C -0.10 -2.21 7.83 -39.66 -0.31 -2.52 16 11 C -0.17 -4.30 8.70 -38.87 -0.34 -4.64 16 12 C 0.11 2.99 5.57 -106.83 -0.60 2.39 16 13 C -0.46 -12.41 9.05 -37.74 -0.34 -12.76 16 14 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 15 C 0.08 1.93 5.15 -17.34 -0.09 1.84 16 16 N -0.79 -20.62 10.95 55.55 0.61 -20.01 16 17 Si 0.91 18.75 29.59 -169.99 -5.03 13.72 16 18 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 19 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 21 C -0.23 -5.65 9.80 -38.87 -0.38 -6.03 16 22 C -0.07 -1.59 9.67 -39.66 -0.38 -1.97 16 23 C 0.06 1.03 5.01 -3.83 -0.02 1.01 16 24 C -0.14 -1.99 4.59 -26.65 -0.12 -2.11 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.50 6.38 -51.93 -0.33 0.17 16 27 H 0.04 0.38 6.42 -51.93 -0.33 0.05 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.56 6.54 -51.93 -0.34 0.22 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.91 8.02 -51.93 -0.42 0.49 16 34 H 0.03 0.52 7.76 -51.93 -0.40 0.12 16 35 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 36 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 37 H 0.08 1.76 7.94 -52.49 -0.42 1.34 16 38 H 0.12 3.12 6.16 -52.48 -0.32 2.79 16 39 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 40 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 41 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 42 H 0.03 0.48 7.76 -51.93 -0.40 0.07 16 43 H 0.09 1.79 5.74 -51.93 -0.30 1.49 16 44 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.07 0.87 6.44 -51.93 -0.33 0.54 16 LS Contribution 347.05 15.07 5.23 5.23 Total: -1.00 -27.67 347.05 -9.98 -37.64 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -7.36 Total: 5.93 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: -2.00 Total: -26.99 kcal Atomic # 7 Polarization: -29.66 SS G_CDS: -0.49 Total: -30.15 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.32 Total: -5.39 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.67 -9.98 -37.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343691676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.791 kcal (2) G-P(sol) polarization free energy of solvation -27.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds