Wall clock time and date at job start Tue Mar 31 2020 05:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00034 * 2 1 4 4 C 1.53000 * 109.52634 * 300.13155 * 3 2 1 5 5 C 1.53117 * 109.52439 * 180.02562 * 3 2 1 6 6 C 1.53034 * 109.27915 * 297.75389 * 5 3 2 7 7 N 1.46848 * 109.52290 * 300.82083 * 6 5 3 8 8 C 1.46904 * 110.99896 * 185.83764 * 7 6 5 9 9 C 1.50703 * 109.46828 * 170.00007 * 8 7 6 10 10 C 1.38629 * 119.74940 * 90.00451 * 9 8 7 11 11 C 1.37624 * 120.24650 * 179.97438 * 10 9 8 12 12 C 1.40709 * 119.74609 * 359.97438 * 11 10 9 13 13 C 1.41396 * 120.24474 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00017 * 155.57121 * 13 12 11 15 15 C 1.39945 * 119.99955 * 335.30142 * 13 12 11 16 16 N 1.30820 * 120.00086 * 342.55190 * 15 13 12 17 17 Si 1.86803 * 119.99862 * 162.55208 * 15 13 12 18 18 H 1.48497 * 109.47547 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.46828 * 119.99994 * 17 15 13 20 20 H 1.48502 * 109.46817 * 239.99969 * 17 15 13 21 21 C 1.40718 * 119.51124 * 0.26996 * 12 11 10 22 22 C 1.37611 * 119.74343 * 359.47505 * 21 12 11 23 23 C 1.46842 * 111.19765 * 61.74367 * 7 6 5 24 24 C 1.53041 * 109.52493 * 298.25400 * 23 7 6 25 25 H 1.09001 * 109.47147 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47501 * 299.99756 * 1 2 3 27 27 H 1.09003 * 109.47202 * 60.00037 * 1 2 3 28 28 H 1.09003 * 109.46844 * 299.86959 * 4 3 2 29 29 H 1.09002 * 109.47186 * 59.86627 * 4 3 2 30 30 H 1.08996 * 109.47044 * 179.87159 * 4 3 2 31 31 H 1.08996 * 109.50526 * 177.81446 * 5 3 2 32 32 H 1.08999 * 109.53440 * 57.71179 * 5 3 2 33 33 H 1.09003 * 109.46816 * 180.80436 * 6 5 3 34 34 H 1.09002 * 109.46391 * 60.83368 * 6 5 3 35 35 H 1.09000 * 109.46991 * 50.00442 * 8 7 6 36 36 H 1.08998 * 109.47398 * 289.99922 * 8 7 6 37 37 H 1.07992 * 119.88021 * 359.97017 * 10 9 8 38 38 H 1.08005 * 120.12321 * 179.97438 * 11 10 9 39 39 H 0.96997 * 120.00216 * 179.97438 * 16 15 13 40 40 H 1.08002 * 120.12485 * 179.70167 * 21 12 11 41 41 H 1.08003 * 119.87558 * 180.27307 * 22 21 12 42 42 H 1.08995 * 109.46909 * 58.27651 * 23 7 6 43 43 H 1.09007 * 109.46421 * 178.24372 * 23 7 6 44 44 H 1.08997 * 109.50437 * 299.24547 * 24 23 7 45 45 H 1.08991 * 109.53735 * 179.14239 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5570 2.0671 -1.2472 5 6 3.5368 1.1860 -0.0006 6 6 3.9885 0.4757 1.2774 7 7 3.5400 1.2400 2.4483 8 6 4.0734 0.6629 3.6895 9 6 3.8019 1.6013 4.8370 10 6 2.6245 1.4824 5.5591 11 6 2.3664 2.3336 6.6093 12 6 3.3031 3.3270 6.9492 13 6 3.0489 4.2069 8.0265 14 1 3.8709 4.6833 8.5402 15 6 1.7320 4.4647 8.4236 16 7 0.7394 4.1849 7.6187 17 14 1.3915 5.2085 10.1030 18 1 2.6751 5.4290 10.8163 19 1 0.6880 6.5056 9.9364 20 1 0.5405 4.2815 10.8915 21 6 4.4925 3.4417 6.2059 22 6 4.7320 2.5763 5.1632 23 6 2.0749 1.3275 2.4958 24 6 1.5659 2.0633 1.2542 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8788 1.5287 -2.1386 29 1 0.4702 2.1516 -1.2463 30 1 1.9990 3.0634 -1.2451 31 1 3.9797 2.1811 -0.0398 32 1 3.8569 0.6106 -0.8693 33 1 5.0760 0.4017 1.2868 34 1 3.5563 -0.5245 1.3092 35 1 5.1484 0.5141 3.5884 36 1 3.5904 -0.2952 3.8817 37 1 1.9071 0.7191 5.2966 38 1 1.4483 2.2395 7.1703 39 1 -0.1734 4.3632 7.8940 40 1 5.2161 4.2037 6.4552 41 1 5.6461 2.6596 4.5941 42 1 1.6516 0.3234 2.5220 43 1 1.7724 1.8723 3.3902 44 1 1.9779 3.0722 1.2347 45 1 0.4776 2.1150 1.2817 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343691676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:12 Heat of formation + Delta-G solvation = -47.685871 kcal Electronic energy + Delta-G solvation = -23501.442293 eV Core-core repulsion = 20289.363090 eV Total energy + Delta-G solvation = -3212.079202 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.01735 -39.53985 -37.77096 -35.65062 -34.11043 -32.11349 -31.83078 -31.12036 -29.57901 -27.89835 -27.26119 -25.02655 -24.12269 -22.87013 -22.42941 -21.47185 -20.48109 -19.20378 -17.40801 -17.17656 -16.58956 -16.35871 -16.34560 -16.06862 -15.84988 -15.59104 -15.10401 -14.85395 -14.29067 -14.19793 -13.92660 -13.79634 -13.46143 -13.37318 -13.21360 -13.10620 -12.89148 -12.77908 -12.66312 -12.43811 -12.31543 -12.14967 -12.01385 -11.96108 -11.67911 -11.31819 -11.22237 -11.04532 -10.97634 -10.38876 -9.35487 -9.22359 -9.05268 -8.61910 -6.31551 0.95399 1.17972 1.37678 1.49542 1.53125 2.21228 2.67506 2.86510 3.21290 3.72228 3.78967 3.83941 3.94993 4.16467 4.30191 4.35297 4.44307 4.46481 4.50646 4.53132 4.56356 4.66184 4.69380 4.70041 4.74618 4.79726 4.85092 4.90834 4.99798 5.05849 5.09013 5.10327 5.17702 5.20519 5.27422 5.32034 5.39949 5.50046 5.73243 5.98457 6.12421 6.16572 6.30264 6.33523 6.38389 6.42131 6.72722 6.96576 7.06570 8.34833 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023746 B = 0.003727 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.876879 B = 7511.548561 C = 8126.461339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.395 6.395 3 C 0.112 3.888 4 C -0.171 4.171 5 C -0.096 4.096 6 C 0.057 3.943 7 N -0.538 5.538 8 C 0.125 3.875 9 C -0.192 4.192 10 C -0.095 4.095 11 C -0.189 4.189 12 C 0.080 3.920 13 C -0.503 4.503 14 H 0.073 0.927 15 C 0.036 3.964 16 N -0.827 5.827 17 Si 0.981 3.019 18 H -0.258 1.258 19 H -0.265 1.265 20 H -0.264 1.264 21 C -0.243 4.243 22 C -0.072 4.072 23 C 0.066 3.934 24 C -0.136 4.136 25 H 0.092 0.908 26 H 0.036 0.964 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.028 0.972 35 H 0.083 0.917 36 H 0.024 0.976 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.287 0.713 40 H 0.095 0.905 41 H 0.115 0.885 42 H 0.022 0.978 43 H 0.054 0.946 44 H 0.072 0.928 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.317 -5.799 -14.784 15.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.315 6.315 3 C 0.073 3.927 4 C -0.228 4.228 5 C -0.133 4.133 6 C -0.070 4.070 7 N -0.263 5.263 8 C -0.002 4.002 9 C -0.194 4.194 10 C -0.114 4.114 11 C -0.208 4.208 12 C 0.078 3.922 13 C -0.533 4.533 14 H 0.091 0.909 15 C -0.179 4.179 16 N -0.454 5.454 17 Si 0.801 3.199 18 H -0.182 1.182 19 H -0.190 1.190 20 H -0.189 1.189 21 C -0.263 4.263 22 C -0.090 4.090 23 C -0.062 4.062 24 C -0.174 4.174 25 H 0.111 0.889 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.046 0.954 35 H 0.102 0.898 36 H 0.042 0.958 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.133 0.867 42 H 0.041 0.959 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.267 -5.482 -14.878 15.859 hybrid contribution -1.037 -0.111 1.143 1.547 sum -1.304 -5.593 -13.735 14.887 Atomic orbital electron populations 1.22884 0.80865 1.03251 1.00546 1.87911 1.20450 1.28043 1.95049 1.21611 0.94319 0.82948 0.93854 1.22333 1.02139 1.01125 0.97183 1.21601 0.92097 1.02305 0.97344 1.22068 1.00393 0.94674 0.89888 1.62008 1.09339 1.52584 1.02397 1.20656 0.99584 0.92989 0.86951 1.19267 0.96517 1.02678 1.00912 1.20680 0.96260 0.98312 0.96113 1.21216 1.01128 0.97648 1.00843 1.17942 0.91702 0.91028 0.91565 1.19857 0.93391 1.25041 1.14998 0.90869 1.26732 0.95196 0.94275 1.01656 1.69890 1.01166 1.37968 1.36350 0.85186 0.79220 0.78367 0.77080 1.18202 1.19012 1.18910 1.21176 1.00551 1.03697 1.00846 1.20626 0.98197 0.94367 0.95821 1.21857 0.87960 0.98111 0.98269 1.22150 1.00699 1.00039 0.94486 0.88945 0.94495 0.92420 0.90934 0.91763 0.90743 0.89515 0.89389 0.89778 0.95371 0.89825 0.95756 0.88804 0.88484 0.90292 0.88714 0.86717 0.95932 0.92744 0.90901 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.22 113.37 1.16 1.56 16 2 O -0.39 -9.72 9.20 -148.98 -1.37 -11.09 16 3 C 0.11 2.56 0.72 -10.71 -0.01 2.55 16 4 C -0.17 -3.01 8.27 71.98 0.59 -2.42 16 5 C -0.10 -2.12 5.11 30.64 0.16 -1.96 16 6 C 0.06 1.49 5.33 86.32 0.46 1.95 16 7 N -0.54 -17.49 4.65 -900.92 -4.19 -21.68 16 8 C 0.12 4.35 5.11 85.56 0.44 4.79 16 9 C -0.19 -8.29 4.91 -19.67 -0.10 -8.39 16 10 C -0.09 -4.50 7.83 22.22 0.17 -4.33 16 11 C -0.19 -10.24 8.70 22.73 0.20 -10.04 16 12 C 0.08 4.45 5.57 -21.29 -0.12 4.33 16 13 C -0.50 -28.01 9.05 23.46 0.21 -27.80 16 14 H 0.07 3.95 7.91 -2.91 -0.02 3.93 16 15 C 0.04 1.85 5.15 85.26 0.44 2.29 16 16 N -0.83 -44.40 10.95 21.83 0.24 -44.17 16 17 Si 0.98 39.11 29.59 68.60 2.03 41.14 16 18 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 19 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 20 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 21 C -0.24 -12.32 9.80 22.73 0.22 -12.09 16 22 C -0.07 -3.20 9.67 22.22 0.21 -2.98 16 23 C 0.07 2.22 5.01 86.33 0.43 2.66 16 24 C -0.14 -3.75 4.59 30.65 0.14 -3.61 16 25 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.04 0.78 6.38 -2.39 -0.02 0.76 16 27 H 0.06 0.93 6.42 -2.39 -0.02 0.91 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 1.06 6.54 -2.39 -0.02 1.04 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.08 1.94 8.02 -2.39 -0.02 1.92 16 34 H 0.03 0.78 7.76 -2.39 -0.02 0.76 16 35 H 0.08 2.60 7.93 -2.39 -0.02 2.58 16 36 H 0.02 0.84 8.06 -2.39 -0.02 0.82 16 37 H 0.09 4.13 7.94 -2.91 -0.02 4.10 16 38 H 0.10 5.53 6.16 -2.91 -0.02 5.51 16 39 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 40 H 0.09 4.57 8.06 -2.91 -0.02 4.54 16 41 H 0.11 4.44 8.06 -2.91 -0.02 4.41 16 42 H 0.02 0.77 7.76 -2.39 -0.02 0.75 16 43 H 0.05 2.21 5.74 -2.38 -0.01 2.19 16 44 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.07 1.85 6.44 -2.39 -0.02 1.84 16 Total: -1.00 -61.17 347.05 2.28 -58.88 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: 0.95 Total: 30.39 kcal Atomic # 6 Polarization: -58.10 SS G_CDS: 4.62 Total: -53.48 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: -3.95 Total: -65.84 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -1.37 Total: -11.09 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -61.17 2.28 -58.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343691676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.196 kcal (2) G-P(sol) polarization free energy of solvation -61.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds