Wall clock time and date at job start Tue Mar 31 2020 06:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47135 * 2 1 4 4 C 1.52994 * 109.50898 * 300.09028 * 3 2 1 5 5 C 1.53103 * 109.53804 * 60.19979 * 3 2 1 6 6 O 1.43020 * 109.25455 * 176.80252 * 5 3 2 7 7 C 1.43008 * 113.74127 * 301.32803 * 6 5 3 8 8 C 1.53102 * 109.25754 * 58.67061 * 7 6 5 9 9 N 1.47010 * 109.25843 * 303.15114 * 8 7 6 10 10 C 1.46899 * 110.99905 * 182.39253 * 9 8 7 11 11 C 1.50699 * 109.47290 * 46.36589 * 10 9 8 12 12 C 1.38633 * 119.74921 * 90.00349 * 11 10 9 13 13 C 1.37611 * 120.24911 * 180.02562 * 12 11 10 14 14 C 1.40713 * 119.74379 * 359.97438 * 13 12 11 15 15 C 1.41400 * 120.24247 * 179.97438 * 14 13 12 16 16 H 1.08008 * 119.99995 * 150.23582 * 15 14 13 17 17 C 1.39942 * 120.00218 * 330.23023 * 15 14 13 18 18 N 1.30823 * 120.00048 * 161.72284 * 17 15 14 19 19 Si 1.86797 * 119.99901 * 341.72730 * 17 15 14 20 20 H 1.48505 * 109.47092 * 95.40954 * 19 17 15 21 21 H 1.48504 * 109.47048 * 215.40784 * 19 17 15 22 22 H 1.48504 * 109.47350 * 335.40792 * 19 17 15 23 23 C 1.40711 * 119.51580 * 0.02562 * 14 13 12 24 24 C 1.37623 * 119.74422 * 0.02562 * 23 14 13 25 25 H 1.08997 * 109.46663 * 299.99194 * 1 2 3 26 26 H 1.08996 * 109.46878 * 59.99668 * 1 2 3 27 27 H 1.09003 * 109.46645 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46689 * 240.00264 * 2 1 3 29 29 H 1.08999 * 109.47365 * 120.00466 * 2 1 3 30 30 H 1.09001 * 109.47031 * 299.91285 * 4 3 2 31 31 H 1.09005 * 109.46915 * 59.91576 * 4 3 2 32 32 H 1.09001 * 109.47154 * 179.90686 * 4 3 2 33 33 H 1.08999 * 109.50855 * 296.73691 * 5 3 2 34 34 H 1.08996 * 109.50856 * 56.82549 * 5 3 2 35 35 H 1.08998 * 109.51279 * 178.60954 * 7 6 5 36 36 H 1.09000 * 109.50715 * 298.69279 * 7 6 5 37 37 H 1.09001 * 109.50575 * 183.21567 * 8 7 6 38 38 H 1.09000 * 109.50564 * 63.08919 * 8 7 6 39 39 H 1.09001 * 109.47049 * 286.35968 * 10 9 8 40 40 H 1.09006 * 109.47139 * 166.36807 * 10 9 8 41 41 H 1.08009 * 119.87272 * 0.26977 * 12 11 10 42 42 H 1.07999 * 120.12833 * 179.97438 * 13 12 11 43 43 H 0.96997 * 119.99761 * 180.02562 * 18 17 15 44 44 H 1.08002 * 120.13368 * 179.97438 * 23 14 13 45 45 H 1.07997 * 119.87899 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5287 2.1652 -1.2478 5 6 1.5347 2.1642 1.2521 6 8 2.0754 3.4879 1.2840 7 6 3.5049 3.5260 1.2855 8 6 4.0303 2.8180 0.0338 9 7 3.5102 1.4434 0.0000 10 6 4.0371 0.7095 -1.1583 11 6 5.5233 0.9362 -1.2631 12 6 6.3974 0.0787 -0.6131 13 6 7.7564 0.2764 -0.7013 14 6 8.2576 1.3536 -1.4553 15 6 9.6521 1.5669 -1.5526 16 1 10.0677 2.0256 -2.4377 17 6 10.4936 1.1837 -0.5022 18 7 11.7772 1.0414 -0.7109 19 14 9.7840 0.8754 1.1981 20 1 9.5149 -0.5753 1.3665 21 1 10.7560 1.3215 2.2284 22 1 8.5171 1.6350 1.3510 23 6 7.3611 2.2176 -2.1108 24 6 6.0058 2.0013 -2.0078 25 1 -0.3632 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8935 -0.5139 0.8899 30 1 1.8920 1.6531 -2.1388 31 1 0.4387 2.1642 -1.2471 32 1 1.8910 3.1932 -1.2463 33 1 0.4462 2.2162 1.2279 34 1 1.8534 1.6187 2.1403 35 1 3.8415 4.5628 1.2855 36 1 3.8816 3.0212 2.1751 37 1 5.1197 2.7945 0.0592 38 1 3.6978 3.3549 -0.8546 39 1 3.5503 1.0658 -2.0662 40 1 3.8398 -0.3553 -1.0343 41 1 6.0104 -0.7500 -0.0385 42 1 8.4356 -0.3926 -0.1938 43 1 12.3604 0.7755 0.0171 44 1 7.7349 3.0477 -2.6918 45 1 5.3158 2.6629 -2.5103 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343756749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:43 Heat of formation + Delta-G solvation = -25.368614 kcal Electronic energy + Delta-G solvation = -24023.976609 eV Core-core repulsion = 20812.865155 eV Total energy + Delta-G solvation = -3211.111453 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.38041 -37.95647 -36.24734 -34.51225 -33.34545 -30.92993 -29.89520 -29.68430 -28.41908 -27.07287 -25.50364 -24.56406 -22.86732 -21.71314 -21.32505 -20.03143 -18.33111 -17.44664 -16.62611 -16.23292 -15.78498 -15.29914 -15.05406 -14.51304 -14.28861 -13.89414 -13.82158 -13.74491 -13.60922 -13.10950 -12.85418 -12.63578 -12.37815 -12.30033 -11.92311 -11.87974 -11.68360 -11.40519 -11.28252 -11.04912 -10.82816 -10.79564 -10.68874 -10.56858 -10.22823 -10.21736 -9.79232 -9.54887 -9.40330 -9.13488 -8.03820 -7.73014 -7.49495 -6.97475 -4.50506 2.51400 2.66950 3.10397 3.20905 3.31350 3.91147 3.97083 4.03369 4.51062 4.71414 4.83397 4.99671 5.12923 5.18272 5.30527 5.34903 5.40227 5.43187 5.49791 5.61554 5.63841 5.73509 5.75464 5.79869 5.90330 5.90980 5.98300 6.01004 6.05520 6.11497 6.19261 6.22787 6.31426 6.39358 6.55041 6.82918 6.87292 7.14901 7.18564 7.29437 7.34686 7.42034 7.59383 7.79439 7.87041 8.10385 8.33511 8.63667 8.78189 10.04908 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025023 B = 0.004337 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.717855 B = 6454.114315 C = 6614.347736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C 0.073 3.927 4 C -0.178 4.178 5 C 0.076 3.924 6 O -0.388 6.388 7 C 0.062 3.938 8 C 0.018 3.982 9 N -0.521 5.521 10 C 0.115 3.885 11 C -0.218 4.218 12 C -0.054 4.054 13 C -0.240 4.240 14 C 0.096 3.904 15 C -0.448 4.448 16 H 0.089 0.911 17 C 0.085 3.915 18 N -0.808 5.808 19 Si 0.913 3.087 20 H -0.271 1.271 21 H -0.292 1.292 22 H -0.244 1.244 23 C -0.210 4.210 24 C -0.074 4.074 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.056 0.944 37 H 0.102 0.898 38 H 0.040 0.960 39 H 0.032 0.968 40 H 0.069 0.931 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.285 0.715 44 H 0.098 0.902 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.912 0.214 3.355 18.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.018 4.018 4 C -0.236 4.236 5 C -0.001 4.001 6 O -0.306 6.306 7 C -0.015 4.015 8 C -0.110 4.110 9 N -0.245 5.245 10 C -0.011 4.011 11 C -0.219 4.219 12 C -0.072 4.072 13 C -0.260 4.260 14 C 0.093 3.907 15 C -0.477 4.477 16 H 0.107 0.893 17 C -0.134 4.134 18 N -0.432 5.432 19 Si 0.739 3.261 20 H -0.197 1.197 21 H -0.219 1.219 22 H -0.167 1.167 23 C -0.230 4.230 24 C -0.093 4.093 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.074 0.926 37 H 0.120 0.880 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.087 0.913 41 H 0.111 0.889 42 H 0.117 0.883 43 H 0.096 0.904 44 H 0.117 0.883 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.568 0.106 3.832 17.982 hybrid contribution -0.044 -0.053 -0.079 0.105 sum -17.613 0.054 3.753 18.008 Atomic orbital electron populations 1.21898 0.95793 1.01651 1.01892 1.21532 0.95281 0.95065 1.02999 1.21706 0.88972 0.95678 0.95396 1.22418 1.01379 1.01403 0.98407 1.22693 0.97978 0.83358 0.96117 1.87929 1.20786 1.26973 1.94926 1.22728 0.80355 1.00811 0.97612 1.22842 1.02438 0.88673 0.97070 1.62610 1.04652 1.14361 1.42882 1.20839 0.92595 0.97536 0.90120 1.18901 0.92609 1.01608 1.08820 1.20417 0.93041 0.97150 0.96628 1.21016 0.94482 1.01226 1.09241 1.17732 0.93446 0.89581 0.89955 1.19523 0.89827 1.34438 1.03888 0.89253 1.26164 0.94481 0.90901 1.01894 1.69699 1.05376 1.33345 1.34827 0.86289 0.79957 0.79711 0.80099 1.19705 1.21935 1.16682 1.20983 0.92350 1.01379 1.08264 1.20496 0.94968 0.96075 0.97755 0.92617 0.92425 0.92655 0.91423 0.91130 0.92327 0.92120 0.91906 0.88958 0.92698 0.88832 0.92553 0.88020 0.94180 0.95012 0.91262 0.88897 0.88345 0.90448 0.88344 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.21 37.16 0.34 -0.97 16 2 C -0.11 -1.19 4.69 -26.73 -0.13 -1.32 16 3 C 0.07 0.90 0.46 -131.49 -0.06 0.84 16 4 C -0.18 -2.12 7.35 37.15 0.27 -1.85 16 5 C 0.08 0.91 5.25 37.21 0.20 1.11 16 6 O -0.39 -5.41 10.28 -35.23 -0.36 -5.77 16 7 C 0.06 0.85 7.01 37.21 0.26 1.11 16 8 C 0.02 0.27 4.25 -3.71 -0.02 0.26 16 9 N -0.52 -7.83 4.63 -220.10 -1.02 -8.85 16 10 C 0.12 1.84 4.48 -4.98 -0.02 1.82 16 11 C -0.22 -4.24 4.17 -104.33 -0.44 -4.68 16 12 C -0.05 -1.14 9.67 -39.66 -0.38 -1.52 16 13 C -0.24 -5.72 7.18 -38.88 -0.28 -6.00 16 14 C 0.10 2.40 5.11 -106.83 -0.55 1.85 16 15 C -0.45 -12.06 9.57 -37.74 -0.36 -12.42 16 16 H 0.09 2.52 8.06 -52.48 -0.42 2.09 16 17 C 0.08 2.21 5.40 -17.34 -0.09 2.12 16 18 N -0.81 -21.53 13.93 55.55 0.77 -20.76 16 19 Si 0.91 20.88 24.52 -169.99 -4.17 16.71 16 20 H -0.27 -6.05 6.71 56.52 0.38 -5.67 16 21 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.24 -5.71 6.86 56.52 0.39 -5.32 16 23 C -0.21 -4.77 9.80 -38.87 -0.38 -5.15 16 24 C -0.07 -1.49 7.81 -39.66 -0.31 -1.80 16 25 H 0.05 0.43 6.51 -51.93 -0.34 0.10 16 26 H 0.06 0.48 6.43 -51.93 -0.33 0.14 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.76 6.60 -51.93 -0.34 0.42 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.72 6.26 -51.93 -0.33 0.39 16 31 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 32 H 0.06 0.83 6.07 -51.93 -0.31 0.52 16 33 H 0.09 0.94 6.62 -51.93 -0.34 0.59 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 1.83 5.91 -51.93 -0.31 1.52 16 38 H 0.04 0.62 6.39 -51.93 -0.33 0.29 16 39 H 0.03 0.50 5.87 -51.93 -0.30 0.19 16 40 H 0.07 1.07 6.80 -51.93 -0.35 0.72 16 41 H 0.09 1.80 8.06 -52.48 -0.42 1.37 16 42 H 0.10 2.37 4.73 -52.49 -0.25 2.12 16 43 H 0.29 6.88 8.30 -40.82 -0.34 6.54 16 44 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 45 H 0.09 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 331.30 15.07 4.99 4.99 Total: -1.00 -26.85 331.30 -8.58 -35.43 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.85 Total: 4.83 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: -1.94 Total: -26.59 kcal Atomic # 7 Polarization: -29.36 SS G_CDS: -0.25 Total: -29.60 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.36 Total: -5.77 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.17 Total: 16.71 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -26.85 -8.58 -35.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343756749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.060 kcal (2) G-P(sol) polarization free energy of solvation -26.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds