Wall clock time and date at job start Tue Mar 31 2020 06:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47135 * 2 1 4 4 C 1.52994 * 109.50898 * 300.09028 * 3 2 1 5 5 C 1.53103 * 109.53804 * 60.19979 * 3 2 1 6 6 O 1.43020 * 109.25455 * 176.80252 * 5 3 2 7 7 C 1.43008 * 113.74127 * 301.32803 * 6 5 3 8 8 C 1.53102 * 109.25754 * 58.67061 * 7 6 5 9 9 N 1.47010 * 109.25843 * 303.15114 * 8 7 6 10 10 C 1.46899 * 110.99905 * 182.39253 * 9 8 7 11 11 C 1.50699 * 109.47290 * 46.36589 * 10 9 8 12 12 C 1.38633 * 119.74921 * 90.00349 * 11 10 9 13 13 C 1.37611 * 120.24911 * 180.02562 * 12 11 10 14 14 C 1.40713 * 119.74379 * 359.97438 * 13 12 11 15 15 C 1.41400 * 120.24247 * 179.97438 * 14 13 12 16 16 H 1.08008 * 119.99995 * 150.23582 * 15 14 13 17 17 C 1.39942 * 120.00218 * 330.23023 * 15 14 13 18 18 N 1.30823 * 120.00048 * 161.72284 * 17 15 14 19 19 Si 1.86797 * 119.99901 * 341.72730 * 17 15 14 20 20 H 1.48505 * 109.47092 * 95.40954 * 19 17 15 21 21 H 1.48504 * 109.47048 * 215.40784 * 19 17 15 22 22 H 1.48504 * 109.47350 * 335.40792 * 19 17 15 23 23 C 1.40711 * 119.51580 * 0.02562 * 14 13 12 24 24 C 1.37623 * 119.74422 * 0.02562 * 23 14 13 25 25 H 1.08997 * 109.46663 * 299.99194 * 1 2 3 26 26 H 1.08996 * 109.46878 * 59.99668 * 1 2 3 27 27 H 1.09003 * 109.46645 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46689 * 240.00264 * 2 1 3 29 29 H 1.08999 * 109.47365 * 120.00466 * 2 1 3 30 30 H 1.09001 * 109.47031 * 299.91285 * 4 3 2 31 31 H 1.09005 * 109.46915 * 59.91576 * 4 3 2 32 32 H 1.09001 * 109.47154 * 179.90686 * 4 3 2 33 33 H 1.08999 * 109.50855 * 296.73691 * 5 3 2 34 34 H 1.08996 * 109.50856 * 56.82549 * 5 3 2 35 35 H 1.08998 * 109.51279 * 178.60954 * 7 6 5 36 36 H 1.09000 * 109.50715 * 298.69279 * 7 6 5 37 37 H 1.09001 * 109.50575 * 183.21567 * 8 7 6 38 38 H 1.09000 * 109.50564 * 63.08919 * 8 7 6 39 39 H 1.09001 * 109.47049 * 286.35968 * 10 9 8 40 40 H 1.09006 * 109.47139 * 166.36807 * 10 9 8 41 41 H 1.08009 * 119.87272 * 0.26977 * 12 11 10 42 42 H 1.07999 * 120.12833 * 179.97438 * 13 12 11 43 43 H 0.96997 * 119.99761 * 180.02562 * 18 17 15 44 44 H 1.08002 * 120.13368 * 179.97438 * 23 14 13 45 45 H 1.07997 * 119.87899 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5287 2.1652 -1.2478 5 6 1.5347 2.1642 1.2521 6 8 2.0754 3.4879 1.2840 7 6 3.5049 3.5260 1.2855 8 6 4.0303 2.8180 0.0338 9 7 3.5102 1.4434 0.0000 10 6 4.0371 0.7095 -1.1583 11 6 5.5233 0.9362 -1.2631 12 6 6.3974 0.0787 -0.6131 13 6 7.7564 0.2764 -0.7013 14 6 8.2576 1.3536 -1.4553 15 6 9.6521 1.5669 -1.5526 16 1 10.0677 2.0256 -2.4377 17 6 10.4936 1.1837 -0.5022 18 7 11.7772 1.0414 -0.7109 19 14 9.7840 0.8754 1.1981 20 1 9.5149 -0.5753 1.3665 21 1 10.7560 1.3215 2.2284 22 1 8.5171 1.6350 1.3510 23 6 7.3611 2.2176 -2.1108 24 6 6.0058 2.0013 -2.0078 25 1 -0.3632 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8935 -0.5139 0.8899 30 1 1.8920 1.6531 -2.1388 31 1 0.4387 2.1642 -1.2471 32 1 1.8910 3.1932 -1.2463 33 1 0.4462 2.2162 1.2279 34 1 1.8534 1.6187 2.1403 35 1 3.8415 4.5628 1.2855 36 1 3.8816 3.0212 2.1751 37 1 5.1197 2.7945 0.0592 38 1 3.6978 3.3549 -0.8546 39 1 3.5503 1.0658 -2.0662 40 1 3.8398 -0.3553 -1.0343 41 1 6.0104 -0.7500 -0.0385 42 1 8.4356 -0.3926 -0.1938 43 1 12.3604 0.7755 0.0171 44 1 7.7349 3.0477 -2.6918 45 1 5.3158 2.6629 -2.5103 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343756749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:42 Heat of formation + Delta-G solvation = -41.463542 kcal Electronic energy + Delta-G solvation = -24024.674537 eV Core-core repulsion = 20812.865155 eV Total energy + Delta-G solvation = -3211.809382 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.48974 -39.63229 -37.35720 -35.92931 -34.91864 -32.55927 -31.53612 -30.74003 -29.74012 -28.16096 -26.96576 -25.49276 -24.37525 -23.30065 -22.53617 -21.70997 -19.42542 -19.32202 -17.69763 -17.57293 -17.17003 -16.65037 -16.18866 -15.89424 -15.60046 -15.51327 -15.14675 -14.95413 -14.87580 -14.55419 -14.13374 -14.08870 -13.77282 -13.56246 -13.33631 -13.02977 -12.81641 -12.64728 -12.59385 -12.49736 -12.21134 -12.14147 -11.96250 -11.94286 -11.54671 -11.52090 -11.33518 -11.20564 -10.96916 -10.46265 -9.49944 -9.43343 -9.07775 -8.91357 -6.50007 0.74231 0.87289 1.25125 1.38755 1.47467 2.10871 2.51648 2.90716 3.01266 3.53506 3.78403 3.91680 3.98769 4.07395 4.17204 4.24153 4.26030 4.39930 4.42327 4.47165 4.52399 4.56366 4.70610 4.72828 4.74933 4.79629 4.81978 4.86878 4.90848 5.03133 5.04722 5.10045 5.10794 5.18315 5.23787 5.32483 5.38242 5.50941 5.61208 5.74730 5.89967 6.01254 6.13429 6.17473 6.24987 6.29169 6.41583 6.74131 6.83648 8.17511 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025023 B = 0.004337 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.717855 B = 6454.114315 C = 6614.347736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.108 4.108 3 C 0.073 3.927 4 C -0.173 4.173 5 C 0.072 3.928 6 O -0.396 6.396 7 C 0.065 3.935 8 C 0.021 3.979 9 N -0.529 5.529 10 C 0.119 3.881 11 C -0.190 4.190 12 C -0.061 4.061 13 C -0.250 4.250 14 C 0.075 3.925 15 C -0.488 4.488 16 H 0.054 0.946 17 C 0.050 3.950 18 N -0.852 5.852 19 Si 0.966 3.034 20 H -0.261 1.261 21 H -0.278 1.278 22 H -0.254 1.254 23 C -0.221 4.221 24 C -0.069 4.069 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.048 0.952 33 H 0.116 0.884 34 H 0.054 0.946 35 H 0.106 0.894 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.043 0.957 40 H 0.082 0.918 41 H 0.118 0.882 42 H 0.093 0.907 43 H 0.293 0.707 44 H 0.098 0.902 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.926 -0.396 4.390 22.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 C -0.017 4.017 4 C -0.232 4.232 5 C -0.005 4.005 6 O -0.314 6.314 7 C -0.012 4.012 8 C -0.107 4.107 9 N -0.253 5.253 10 C -0.007 4.007 11 C -0.192 4.192 12 C -0.080 4.080 13 C -0.269 4.269 14 C 0.073 3.927 15 C -0.518 4.518 16 H 0.073 0.927 17 C -0.165 4.165 18 N -0.478 5.478 19 Si 0.790 3.210 20 H -0.186 1.186 21 H -0.205 1.205 22 H -0.178 1.178 23 C -0.240 4.240 24 C -0.087 4.087 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.134 0.866 34 H 0.072 0.928 35 H 0.124 0.876 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.101 0.899 41 H 0.136 0.864 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.117 0.883 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -21.593 -0.506 4.861 22.140 hybrid contribution 0.902 0.155 -0.484 1.035 sum -20.692 -0.351 4.377 21.153 Atomic orbital electron populations 1.21872 0.93879 1.02572 1.02506 1.21517 0.96915 0.93569 1.02593 1.21825 0.86953 0.97025 0.95874 1.22375 1.02651 1.00278 0.97851 1.22880 0.99256 0.82503 0.95836 1.87928 1.20474 1.28148 1.94881 1.22692 0.80572 1.01372 0.96533 1.22740 1.00698 0.89262 0.98036 1.62573 1.06741 1.13978 1.42054 1.20814 0.89849 0.98712 0.91319 1.19380 0.94753 0.99513 1.05517 1.20725 0.92129 0.98216 0.96928 1.21102 0.95760 1.00822 1.09230 1.17848 0.92948 0.90675 0.91253 1.19497 0.91343 1.37120 1.03851 0.92738 1.26776 0.94618 0.90625 1.04442 1.69727 1.06344 1.35683 1.36078 0.85480 0.78958 0.79862 0.76725 1.18604 1.20506 1.17762 1.21155 0.93473 1.01255 1.08105 1.20754 0.94160 0.96473 0.97349 0.91774 0.91985 0.91707 0.91792 0.91585 0.92586 0.90172 0.93322 0.86620 0.92779 0.87595 0.92918 0.90829 0.94136 0.93866 0.89934 0.86433 0.88933 0.89656 0.88342 0.86670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.21 71.98 0.66 -1.25 16 2 C -0.11 -1.90 4.69 30.60 0.14 -1.76 16 3 C 0.07 1.53 0.46 3.54 0.00 1.53 16 4 C -0.17 -3.49 7.35 71.98 0.53 -2.96 16 5 C 0.07 1.48 5.25 72.02 0.38 1.85 16 6 O -0.40 -9.87 10.28 -148.98 -1.53 -11.40 16 7 C 0.07 1.66 7.01 72.02 0.50 2.16 16 8 C 0.02 0.59 4.25 86.32 0.37 0.96 16 9 N -0.53 -14.25 4.63 -850.27 -3.94 -18.18 16 10 C 0.12 3.40 4.48 85.56 0.38 3.78 16 11 C -0.19 -6.93 4.17 -19.67 -0.08 -7.01 16 12 C -0.06 -2.48 9.67 22.22 0.21 -2.26 16 13 C -0.25 -11.83 7.18 22.73 0.16 -11.67 16 14 C 0.08 3.86 5.11 -21.29 -0.11 3.75 16 15 C -0.49 -27.82 9.57 23.46 0.22 -27.59 16 16 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 17 C 0.05 2.71 5.40 85.26 0.46 3.17 16 18 N -0.85 -47.51 13.93 21.83 0.30 -47.20 16 19 Si 0.97 43.79 24.52 68.60 1.68 45.47 16 20 H -0.26 -11.24 6.71 99.48 0.67 -10.57 16 21 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 22 H -0.25 -11.76 6.86 99.48 0.68 -11.08 16 23 C -0.22 -10.08 9.80 22.73 0.22 -9.86 16 24 C -0.07 -2.64 7.81 22.22 0.17 -2.47 16 25 H 0.06 0.72 6.51 -2.39 -0.02 0.70 16 26 H 0.06 0.75 6.43 -2.39 -0.02 0.73 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 1.18 6.60 -2.39 -0.02 1.17 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.16 6.26 -2.39 -0.01 1.14 16 31 H 0.08 1.30 6.43 -2.38 -0.02 1.29 16 32 H 0.05 1.13 6.07 -2.39 -0.01 1.11 16 33 H 0.12 1.84 6.62 -2.39 -0.02 1.82 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 2.52 5.91 -2.39 -0.01 2.51 16 38 H 0.04 1.15 6.39 -2.39 -0.02 1.13 16 39 H 0.04 1.17 5.87 -2.39 -0.01 1.16 16 40 H 0.08 2.20 6.80 -2.38 -0.02 2.19 16 41 H 0.12 4.16 8.06 -2.91 -0.02 4.14 16 42 H 0.09 4.45 4.73 -2.91 -0.01 4.43 16 43 H 0.29 14.68 8.30 -92.71 -0.77 13.91 16 44 H 0.10 4.40 8.06 -2.91 -0.02 4.38 16 45 H 0.12 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -59.71 331.30 1.67 -58.03 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.92 Total: 22.90 kcal Atomic # 6 Polarization: -53.86 SS G_CDS: 4.24 Total: -49.62 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: -3.63 Total: -65.39 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -1.53 Total: -11.40 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.68 Total: 45.47 kcal Total: -59.71 1.67 -58.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343756749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.571 kcal (2) G-P(sol) polarization free energy of solvation -59.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds