Wall clock time and date at job start Tue Mar 31 2020 06:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47572 * 2 1 4 4 C 1.53006 * 109.50470 * 59.91305 * 3 2 1 5 5 C 1.53090 * 109.54360 * 299.80614 * 3 2 1 6 6 O 1.43016 * 109.25840 * 183.19515 * 5 3 2 7 7 C 1.43018 * 113.74264 * 58.66817 * 6 5 3 8 8 C 1.53103 * 109.25586 * 301.33158 * 7 6 5 9 9 N 1.47012 * 109.25543 * 56.84706 * 8 7 6 10 10 C 1.46904 * 110.99743 * 177.60854 * 9 8 7 11 11 C 1.50699 * 109.46806 * 293.63281 * 10 9 8 12 12 C 1.38638 * 119.75026 * 269.72655 * 11 10 9 13 13 C 1.37620 * 120.24927 * 179.72410 * 12 11 10 14 14 C 1.40721 * 119.74004 * 0.56848 * 13 12 11 15 15 C 1.41404 * 120.23996 * 179.68115 * 14 13 12 16 16 H 1.07993 * 119.99838 * 24.41964 * 15 14 13 17 17 C 1.39943 * 119.99540 * 204.40999 * 15 14 13 18 18 N 1.30822 * 120.00490 * 17.86338 * 17 15 14 19 19 Si 1.86798 * 119.99525 * 197.85673 * 17 15 14 20 20 H 1.48502 * 109.47049 * 90.00470 * 19 17 15 21 21 H 1.48503 * 109.47086 * 210.00495 * 19 17 15 22 22 H 1.48496 * 109.47599 * 330.00444 * 19 17 15 23 23 C 1.40706 * 119.51344 * 359.71016 * 14 13 12 24 24 C 1.37621 * 119.74750 * 359.97438 * 23 14 13 25 25 H 1.08999 * 109.46726 * 300.00533 * 1 2 3 26 26 H 1.09002 * 109.46935 * 59.99491 * 1 2 3 27 27 H 1.08995 * 109.47520 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47127 * 239.99750 * 2 1 3 29 29 H 1.09002 * 109.46935 * 120.00509 * 2 1 3 30 30 H 1.09000 * 109.46728 * 180.08471 * 4 3 2 31 31 H 1.08997 * 109.46945 * 300.08923 * 4 3 2 32 32 H 1.09007 * 109.46774 * 60.08658 * 4 3 2 33 33 H 1.09003 * 109.50936 * 303.12343 * 5 3 2 34 34 H 1.09004 * 109.50988 * 63.21574 * 5 3 2 35 35 H 1.08999 * 109.50437 * 61.26218 * 7 6 5 36 36 H 1.08994 * 109.50882 * 181.35050 * 7 6 5 37 37 H 1.08996 * 109.50629 * 296.91159 * 8 7 6 38 38 H 1.08993 * 109.50411 * 176.78159 * 8 7 6 39 39 H 1.09003 * 109.47460 * 53.63414 * 10 9 8 40 40 H 1.09000 * 109.47168 * 173.63944 * 10 9 8 41 41 H 1.07997 * 119.87574 * 359.97438 * 12 11 10 42 42 H 1.07997 * 120.13104 * 180.28017 * 13 12 11 43 43 H 0.96998 * 120.00195 * 179.97438 * 18 17 15 44 44 H 1.08001 * 120.12694 * 179.97438 * 23 14 13 45 45 H 1.08001 * 119.87398 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5288 2.1651 1.2479 5 6 1.5348 2.1643 -1.2518 6 8 2.0755 3.4879 -1.2837 7 6 3.5052 3.5260 -1.2852 8 6 4.0305 2.8179 -0.0336 9 7 3.5103 1.4433 0.0000 10 6 4.0371 0.7092 1.1584 11 6 5.5235 0.5191 0.9988 12 6 6.0077 -0.6119 0.3596 13 6 7.3629 -0.7932 0.2032 14 6 8.2584 0.1690 0.7057 15 6 9.6532 -0.0100 0.5569 16 1 10.0361 -0.6275 -0.2421 17 6 10.5372 0.6133 1.4448 18 7 10.1022 1.0617 2.5942 19 14 12.3385 0.8049 0.9888 20 1 12.5349 2.0942 0.2784 21 1 13.1658 0.7881 2.2219 22 1 12.7470 -0.3152 0.1035 23 6 7.7559 1.3100 1.3579 24 6 6.3965 1.4737 1.4971 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.8913 3.1931 1.2466 31 1 0.4388 2.1641 1.2473 32 1 1.8921 1.6528 2.1389 33 1 1.8541 1.6194 -2.1402 34 1 0.4462 2.2157 -1.2280 35 1 3.8817 3.0205 -2.1744 36 1 3.8417 4.5627 -1.2859 37 1 3.6980 3.3547 0.8549 38 1 5.1198 2.7943 -0.0590 39 1 3.8388 1.2756 2.0683 40 1 3.5512 -0.2643 1.2232 41 1 5.3186 -1.3514 -0.0206 42 1 7.7378 -1.6727 -0.2990 43 1 10.7151 1.4933 3.2098 44 1 8.4343 2.0545 1.7477 45 1 6.0085 2.3490 1.9969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343756750.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:46 Heat of formation + Delta-G solvation = -27.361463 kcal Electronic energy + Delta-G solvation = -23769.459354 eV Core-core repulsion = 20558.261484 eV Total energy + Delta-G solvation = -3211.197870 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.27321 -37.62521 -36.17746 -34.42349 -33.34187 -30.50494 -29.79131 -29.29374 -28.16187 -26.95718 -25.45831 -24.57576 -22.92320 -21.62535 -20.84368 -19.89408 -18.29007 -17.29067 -16.55150 -16.14515 -15.52906 -15.23391 -15.00514 -14.41609 -14.23634 -13.96685 -13.64485 -13.54183 -13.35976 -13.05587 -12.59783 -12.46129 -12.33263 -11.93953 -11.82645 -11.69737 -11.49719 -11.26065 -11.15990 -11.06357 -10.90249 -10.76764 -10.65645 -10.49225 -10.30805 -10.14977 -9.56990 -9.43227 -9.29327 -9.11374 -7.94410 -7.42665 -7.28331 -6.76572 -4.34725 2.73026 3.05977 3.08827 3.10138 3.17152 3.92642 3.95260 4.13094 4.64001 4.77526 4.90189 5.05458 5.17197 5.22690 5.37043 5.39584 5.47035 5.55047 5.67593 5.70781 5.73817 5.78886 5.81625 5.93329 5.98533 6.00158 6.04718 6.07060 6.19930 6.26379 6.32764 6.40217 6.41938 6.45164 6.94570 7.07690 7.21678 7.26265 7.37752 7.42564 7.45874 7.62259 7.89478 8.05979 8.14709 8.30907 8.64402 8.90119 8.98260 10.17987 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028783 B = 0.003721 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.559808 B = 7522.194746 C = 7893.990377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C 0.072 3.928 4 C -0.176 4.176 5 C 0.076 3.924 6 O -0.388 6.388 7 C 0.063 3.937 8 C 0.017 3.983 9 N -0.517 5.517 10 C 0.116 3.884 11 C -0.207 4.207 12 C -0.069 4.069 13 C -0.228 4.228 14 C 0.112 3.888 15 C -0.464 4.464 16 H 0.077 0.923 17 C 0.077 3.923 18 N -0.794 5.794 19 Si 0.907 3.093 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.166 4.166 24 C -0.095 4.095 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.093 0.907 37 H 0.038 0.962 38 H 0.098 0.902 39 H 0.025 0.975 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.280 0.720 44 H 0.116 0.884 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.749 2.297 -3.407 14.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.018 4.018 4 C -0.235 4.235 5 C -0.001 4.001 6 O -0.307 6.307 7 C -0.014 4.014 8 C -0.111 4.111 9 N -0.242 5.242 10 C -0.010 4.010 11 C -0.208 4.208 12 C -0.088 4.088 13 C -0.248 4.248 14 C 0.110 3.890 15 C -0.493 4.493 16 H 0.095 0.905 17 C -0.141 4.141 18 N -0.419 5.419 19 Si 0.731 3.269 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.186 1.186 23 C -0.185 4.185 24 C -0.114 4.114 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.111 0.889 37 H 0.056 0.944 38 H 0.116 0.884 39 H 0.044 0.956 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.134 0.866 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.615 2.328 -3.612 14.277 hybrid contribution 0.858 0.252 0.761 1.175 sum -12.757 2.580 -2.850 13.324 Atomic orbital electron populations 1.21897 0.95842 1.01634 1.01829 1.21578 0.95184 0.95116 1.03161 1.21703 0.89170 0.95663 0.95261 1.22425 1.01362 1.01359 0.98359 1.22692 0.97923 0.83282 0.96218 1.87922 1.20738 1.27074 1.94940 1.22693 0.80425 1.00643 0.97597 1.22809 1.02257 0.88904 0.97152 1.62562 1.04375 1.13878 1.43346 1.20834 0.93715 0.96942 0.89533 1.18839 0.91974 0.99016 1.11018 1.20306 0.94616 0.96017 0.97878 1.20963 0.92863 1.00144 1.10794 1.17615 0.92933 0.89658 0.88808 1.19611 0.91010 1.26554 1.12160 0.90499 1.25897 1.01372 0.93125 0.93698 1.69828 1.37617 1.28738 1.05737 0.86337 0.81690 0.79861 0.78977 1.19288 1.20356 1.18625 1.21275 0.93258 0.98958 1.05005 1.20512 0.93988 0.97008 0.99903 0.92467 0.92654 0.92654 0.91030 0.91238 0.91998 0.92183 0.92514 0.92637 0.88993 0.92408 0.88924 0.94409 0.88370 0.95641 0.91202 0.89613 0.89181 0.90934 0.86602 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.21 37.16 0.34 -1.06 16 2 C -0.11 -1.31 4.72 -26.73 -0.13 -1.43 16 3 C 0.07 0.94 0.46 -131.49 -0.06 0.88 16 4 C -0.18 -2.21 7.32 37.16 0.27 -1.94 16 5 C 0.08 0.95 5.25 37.20 0.20 1.14 16 6 O -0.39 -5.50 10.28 -35.23 -0.36 -5.87 16 7 C 0.06 0.88 7.01 37.21 0.26 1.14 16 8 C 0.02 0.26 4.87 -3.71 -0.02 0.25 16 9 N -0.52 -8.20 4.48 -220.10 -0.99 -9.18 16 10 C 0.12 2.01 4.26 -4.97 -0.02 1.99 16 11 C -0.21 -4.38 4.92 -104.33 -0.51 -4.90 16 12 C -0.07 -1.54 9.67 -39.66 -0.38 -1.93 16 13 C -0.23 -5.59 9.80 -38.87 -0.38 -5.97 16 14 C 0.11 2.98 5.58 -106.82 -0.60 2.38 16 15 C -0.46 -12.30 9.05 -37.74 -0.34 -12.64 16 16 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 17 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 18 N -0.79 -20.46 10.95 55.55 0.61 -19.86 16 19 Si 0.91 18.64 29.59 -169.99 -5.03 13.61 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 23 C -0.17 -4.24 8.70 -38.88 -0.34 -4.58 16 24 C -0.10 -2.16 7.89 -39.66 -0.31 -2.47 16 25 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 26 H 0.05 0.46 6.51 -51.93 -0.34 0.12 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.85 6.16 -51.93 -0.32 0.53 16 30 H 0.06 0.84 6.07 -51.93 -0.31 0.53 16 31 H 0.06 0.65 6.43 -51.93 -0.33 0.31 16 32 H 0.06 0.73 6.69 -51.93 -0.35 0.39 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.97 6.62 -51.93 -0.34 0.63 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.04 0.59 6.39 -51.93 -0.33 0.26 16 38 H 0.10 1.75 6.00 -51.93 -0.31 1.43 16 39 H 0.03 0.44 6.83 -51.93 -0.35 0.09 16 40 H 0.07 1.15 5.69 -51.93 -0.30 0.86 16 41 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 43 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 44 H 0.12 3.08 6.16 -52.49 -0.32 2.76 16 45 H 0.08 1.71 7.99 -52.49 -0.42 1.29 16 LS Contribution 337.47 15.07 5.09 5.09 Total: -1.00 -27.03 337.47 -9.67 -36.70 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.88 Total: 6.82 kcal Atomic # 6 Polarization: -25.20 SS G_CDS: -2.11 Total: -27.31 kcal Atomic # 7 Polarization: -28.66 SS G_CDS: -0.38 Total: -29.04 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.36 Total: -5.87 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.03 -9.67 -36.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343756750.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.340 kcal (2) G-P(sol) polarization free energy of solvation -27.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds