Wall clock time and date at job start Tue Mar 31 2020 06:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47572 * 2 1 4 4 C 1.53006 * 109.50470 * 59.91305 * 3 2 1 5 5 C 1.53090 * 109.54360 * 299.80614 * 3 2 1 6 6 O 1.43016 * 109.25840 * 183.19515 * 5 3 2 7 7 C 1.43018 * 113.74264 * 58.66817 * 6 5 3 8 8 C 1.53103 * 109.25586 * 301.33158 * 7 6 5 9 9 N 1.47012 * 109.25543 * 56.84706 * 8 7 6 10 10 C 1.46904 * 110.99743 * 177.60854 * 9 8 7 11 11 C 1.50699 * 109.46806 * 293.63281 * 10 9 8 12 12 C 1.38638 * 119.75026 * 269.72655 * 11 10 9 13 13 C 1.37620 * 120.24927 * 179.72410 * 12 11 10 14 14 C 1.40721 * 119.74004 * 0.56848 * 13 12 11 15 15 C 1.41404 * 120.23996 * 179.68115 * 14 13 12 16 16 H 1.07993 * 119.99838 * 24.41964 * 15 14 13 17 17 C 1.39943 * 119.99540 * 204.40999 * 15 14 13 18 18 N 1.30822 * 120.00490 * 17.86338 * 17 15 14 19 19 Si 1.86798 * 119.99525 * 197.85673 * 17 15 14 20 20 H 1.48502 * 109.47049 * 90.00470 * 19 17 15 21 21 H 1.48503 * 109.47086 * 210.00495 * 19 17 15 22 22 H 1.48496 * 109.47599 * 330.00444 * 19 17 15 23 23 C 1.40706 * 119.51344 * 359.71016 * 14 13 12 24 24 C 1.37621 * 119.74750 * 359.97438 * 23 14 13 25 25 H 1.08999 * 109.46726 * 300.00533 * 1 2 3 26 26 H 1.09002 * 109.46935 * 59.99491 * 1 2 3 27 27 H 1.08995 * 109.47520 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47127 * 239.99750 * 2 1 3 29 29 H 1.09002 * 109.46935 * 120.00509 * 2 1 3 30 30 H 1.09000 * 109.46728 * 180.08471 * 4 3 2 31 31 H 1.08997 * 109.46945 * 300.08923 * 4 3 2 32 32 H 1.09007 * 109.46774 * 60.08658 * 4 3 2 33 33 H 1.09003 * 109.50936 * 303.12343 * 5 3 2 34 34 H 1.09004 * 109.50988 * 63.21574 * 5 3 2 35 35 H 1.08999 * 109.50437 * 61.26218 * 7 6 5 36 36 H 1.08994 * 109.50882 * 181.35050 * 7 6 5 37 37 H 1.08996 * 109.50629 * 296.91159 * 8 7 6 38 38 H 1.08993 * 109.50411 * 176.78159 * 8 7 6 39 39 H 1.09003 * 109.47460 * 53.63414 * 10 9 8 40 40 H 1.09000 * 109.47168 * 173.63944 * 10 9 8 41 41 H 1.07997 * 119.87574 * 359.97438 * 12 11 10 42 42 H 1.07997 * 120.13104 * 180.28017 * 13 12 11 43 43 H 0.96998 * 120.00195 * 179.97438 * 18 17 15 44 44 H 1.08001 * 120.12694 * 179.97438 * 23 14 13 45 45 H 1.08001 * 119.87398 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5288 2.1651 1.2479 5 6 1.5348 2.1643 -1.2518 6 8 2.0755 3.4879 -1.2837 7 6 3.5052 3.5260 -1.2852 8 6 4.0305 2.8179 -0.0336 9 7 3.5103 1.4433 0.0000 10 6 4.0371 0.7092 1.1584 11 6 5.5235 0.5191 0.9988 12 6 6.0077 -0.6119 0.3596 13 6 7.3629 -0.7932 0.2032 14 6 8.2584 0.1690 0.7057 15 6 9.6532 -0.0100 0.5569 16 1 10.0361 -0.6275 -0.2421 17 6 10.5372 0.6133 1.4448 18 7 10.1022 1.0617 2.5942 19 14 12.3385 0.8049 0.9888 20 1 12.5349 2.0942 0.2784 21 1 13.1658 0.7881 2.2219 22 1 12.7470 -0.3152 0.1035 23 6 7.7559 1.3100 1.3579 24 6 6.3965 1.4737 1.4971 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.8913 3.1931 1.2466 31 1 0.4388 2.1641 1.2473 32 1 1.8921 1.6528 2.1389 33 1 1.8541 1.6194 -2.1402 34 1 0.4462 2.2157 -1.2280 35 1 3.8817 3.0205 -2.1744 36 1 3.8417 4.5627 -1.2859 37 1 3.6980 3.3547 0.8549 38 1 5.1198 2.7943 -0.0590 39 1 3.8388 1.2756 2.0683 40 1 3.5512 -0.2643 1.2232 41 1 5.3186 -1.3514 -0.0206 42 1 7.7378 -1.6727 -0.2990 43 1 10.7151 1.4933 3.2098 44 1 8.4343 2.0545 1.7477 45 1 6.0085 2.3490 1.9969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343756750.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:45 Heat of formation + Delta-G solvation = -41.989988 kcal Electronic energy + Delta-G solvation = -23770.093694 eV Core-core repulsion = 20558.261484 eV Total energy + Delta-G solvation = -3211.832210 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.42214 -39.38918 -37.34423 -35.90633 -34.85739 -32.17862 -31.21778 -30.70304 -29.59586 -28.12108 -26.98947 -25.55463 -24.47767 -22.98148 -22.41493 -21.65045 -19.40210 -19.20923 -17.65462 -17.34541 -17.08118 -16.68444 -16.13310 -15.86205 -15.62933 -15.35769 -15.00200 -14.88125 -14.79702 -14.30821 -14.00473 -13.78328 -13.60759 -13.48475 -13.31404 -12.87879 -12.82789 -12.70002 -12.55991 -12.37857 -12.23841 -12.19109 -12.04787 -11.81155 -11.53752 -11.34082 -11.24914 -11.17878 -10.98091 -10.45195 -9.37713 -9.23740 -9.07673 -8.63477 -6.32355 0.94658 1.17020 1.37269 1.50232 1.50797 2.20469 2.64714 2.91180 3.04558 3.72794 3.80984 3.93980 3.98550 4.07487 4.20111 4.27059 4.37521 4.40808 4.46975 4.53525 4.60376 4.64990 4.68814 4.73995 4.77196 4.79179 4.85539 4.91509 5.01524 5.04564 5.08500 5.16076 5.17839 5.24101 5.36812 5.38879 5.48551 5.50195 5.72027 5.96956 6.06683 6.11481 6.17462 6.26173 6.34328 6.41219 6.71730 6.95729 7.05561 8.33492 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028783 B = 0.003721 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.559808 B = 7522.194746 C = 7893.990377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.110 4.110 3 C 0.072 3.928 4 C -0.171 4.171 5 C 0.073 3.927 6 O -0.395 6.395 7 C 0.068 3.932 8 C 0.019 3.981 9 N -0.527 5.527 10 C 0.124 3.876 11 C -0.192 4.192 12 C -0.072 4.072 13 C -0.244 4.244 14 C 0.080 3.920 15 C -0.504 4.504 16 H 0.072 0.928 17 C 0.037 3.963 18 N -0.827 5.827 19 Si 0.980 3.020 20 H -0.263 1.263 21 H -0.267 1.267 22 H -0.259 1.259 23 C -0.188 4.188 24 C -0.094 4.094 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.118 0.882 35 H 0.053 0.947 36 H 0.109 0.891 37 H 0.038 0.962 38 H 0.072 0.928 39 H 0.027 0.973 40 H 0.084 0.916 41 H 0.112 0.888 42 H 0.093 0.907 43 H 0.287 0.713 44 H 0.097 0.903 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.680 2.367 -3.844 16.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.018 4.018 4 C -0.230 4.230 5 C -0.003 4.003 6 O -0.313 6.313 7 C -0.009 4.009 8 C -0.109 4.109 9 N -0.251 5.251 10 C -0.002 4.002 11 C -0.194 4.194 12 C -0.090 4.090 13 C -0.263 4.263 14 C 0.078 3.922 15 C -0.533 4.533 16 H 0.091 0.909 17 C -0.178 4.178 18 N -0.453 5.453 19 Si 0.801 3.199 20 H -0.187 1.187 21 H -0.192 1.192 22 H -0.183 1.183 23 C -0.208 4.208 24 C -0.113 4.113 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.135 0.865 35 H 0.071 0.929 36 H 0.127 0.873 37 H 0.056 0.944 38 H 0.090 0.910 39 H 0.045 0.955 40 H 0.102 0.898 41 H 0.130 0.870 42 H 0.111 0.889 43 H 0.098 0.902 44 H 0.115 0.885 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.572 2.394 -4.052 16.268 hybrid contribution 1.267 0.220 0.892 1.565 sum -14.305 2.615 -3.160 14.881 Atomic orbital electron populations 1.21866 0.93634 1.02623 1.02578 1.21563 0.97077 0.93701 1.02478 1.21837 0.87032 0.96978 0.95949 1.22376 1.02715 1.00264 0.97642 1.22865 0.99283 0.82481 0.95699 1.87920 1.20481 1.28085 1.94860 1.22667 0.80555 1.01376 0.96284 1.22742 1.00735 0.89223 0.98234 1.62471 1.06587 1.13796 1.42273 1.20716 0.91022 0.98155 0.90353 1.19256 0.94178 0.97597 1.08369 1.20603 0.94124 0.96858 0.97455 1.21159 0.93902 1.00097 1.11190 1.17940 0.93698 0.90568 0.89983 1.19837 0.91840 1.28480 1.13176 0.90938 1.26719 1.05777 0.92195 0.93107 1.69879 1.39436 1.29360 1.06595 0.85232 0.75890 0.79830 0.78923 1.18727 1.19203 1.18275 1.21224 0.94302 0.98859 1.06420 1.20689 0.93162 0.97857 0.99593 0.91939 0.91608 0.91673 0.91670 0.91944 0.93280 0.90029 0.93102 0.92809 0.86466 0.92865 0.87255 0.94399 0.90952 0.95479 0.89771 0.86977 0.88861 0.90236 0.88451 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.21 71.98 0.66 -1.51 16 2 C -0.11 -2.24 4.72 30.59 0.14 -2.10 16 3 C 0.07 1.68 0.46 3.54 0.00 1.68 16 4 C -0.17 -3.83 7.32 71.98 0.53 -3.31 16 5 C 0.07 1.62 5.25 72.01 0.38 2.00 16 6 O -0.39 -10.27 10.28 -148.98 -1.53 -11.81 16 7 C 0.07 1.80 7.01 72.02 0.50 2.30 16 8 C 0.02 0.58 4.87 86.32 0.42 1.00 16 9 N -0.53 -15.84 4.48 -850.27 -3.81 -19.65 16 10 C 0.12 4.11 4.26 85.56 0.36 4.47 16 11 C -0.19 -8.06 4.92 -19.67 -0.10 -8.16 16 12 C -0.07 -3.16 9.67 22.22 0.21 -2.94 16 13 C -0.24 -12.23 9.80 22.73 0.22 -12.00 16 14 C 0.08 4.43 5.58 -21.29 -0.12 4.31 16 15 C -0.50 -27.84 9.05 23.46 0.21 -27.62 16 16 H 0.07 3.89 7.91 -2.91 -0.02 3.87 16 17 C 0.04 1.88 5.14 85.26 0.44 2.32 16 18 N -0.83 -43.99 10.95 21.83 0.24 -43.75 16 19 Si 0.98 38.90 29.59 68.60 2.03 40.93 16 20 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 21 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 22 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 23 C -0.19 -10.05 8.70 22.73 0.20 -9.85 16 24 C -0.09 -4.34 7.89 22.22 0.18 -4.17 16 25 H 0.06 0.86 6.43 -2.39 -0.02 0.84 16 26 H 0.06 0.83 6.51 -2.39 -0.02 0.81 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 1.36 6.16 -2.39 -0.01 1.34 16 30 H 0.05 1.23 6.07 -2.39 -0.01 1.22 16 31 H 0.08 1.47 6.43 -2.39 -0.02 1.45 16 32 H 0.05 1.19 6.69 -2.38 -0.02 1.18 16 33 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.12 2.01 6.62 -2.39 -0.02 1.99 16 35 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.04 1.15 6.39 -2.39 -0.02 1.13 16 38 H 0.07 2.58 6.00 -2.39 -0.01 2.57 16 39 H 0.03 0.90 6.83 -2.39 -0.02 0.88 16 40 H 0.08 2.58 5.69 -2.39 -0.01 2.56 16 41 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 42 H 0.09 4.47 8.06 -2.91 -0.02 4.45 16 43 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 44 H 0.10 5.47 6.16 -2.91 -0.02 5.45 16 45 H 0.10 4.07 7.99 -2.91 -0.02 4.04 16 Total: -1.00 -59.64 337.47 2.16 -57.49 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: 0.98 Total: 30.36 kcal Atomic # 6 Polarization: -57.82 SS G_CDS: 4.25 Total: -53.57 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -3.57 Total: -63.39 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -1.53 Total: -11.81 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -59.64 2.16 -57.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343756750.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.496 kcal (2) G-P(sol) polarization free energy of solvation -59.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds