Wall clock time and date at job start Tue Mar 31 2020 06:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00162 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99868 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47023 * 90.00014 * 9 7 5 11 11 H 1.48496 * 109.47251 * 210.00457 * 9 7 5 12 12 H 1.48498 * 109.47139 * 330.00202 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46901 * 109.46769 * 299.99531 * 13 2 1 15 15 C 1.46906 * 110.99793 * 180.02562 * 14 13 2 16 16 C 1.50700 * 109.47183 * 180.02562 * 15 14 13 17 17 C 1.38266 * 119.97472 * 269.72746 * 16 15 14 18 18 C 1.38307 * 120.03609 * 179.78508 * 17 16 15 19 19 C 1.37964 * 119.91729 * 0.47093 * 18 17 16 20 20 C 1.38597 * 120.04247 * 359.77901 * 19 18 17 21 21 C 1.37971 * 120.03910 * 359.97438 * 20 19 18 22 22 C 1.51085 * 107.27125 * 179.97438 * 20 19 18 23 23 O 1.43938 * 105.95950 * 17.68856 * 22 20 19 24 24 C 1.43948 * 104.94584 * 331.55548 * 23 22 20 25 25 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 26 26 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 27 27 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 30 30 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 31 31 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 32 32 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 33 33 H 0.96996 * 119.99309 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 35 35 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 36 36 H 1.00898 * 110.99877 * 56.04956 * 14 13 2 37 37 H 1.08995 * 109.47087 * 299.99901 * 15 14 13 38 38 H 1.09002 * 109.46903 * 59.99922 * 15 14 13 39 39 H 1.07996 * 119.98269 * 359.97438 * 17 16 15 40 40 H 1.07997 * 120.03610 * 180.25107 * 18 17 16 41 41 H 1.07997 * 120.04029 * 180.02562 * 21 20 19 42 42 H 1.09000 * 110.15121 * 136.81745 * 22 20 19 43 43 H 1.09003 * 110.15076 * 258.56403 * 22 20 19 44 44 H 1.09002 * 110.14750 * 147.56841 * 24 23 22 45 45 H 1.08996 * 110.15145 * 269.24807 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 1.4321 0.1381 -4.8058 9 14 2.9460 -1.9996 -3.9035 10 1 2.0882 -3.2110 -3.9490 11 1 3.7379 -1.9064 -5.1562 12 1 3.8664 -2.0882 -2.7415 13 6 2.0401 -0.7213 1.2492 14 7 1.5504 -0.0288 2.4486 15 6 2.0220 -0.6947 3.6703 16 6 1.5004 0.0419 4.8771 17 6 2.2415 1.0680 5.4337 18 6 1.7620 1.7477 6.5387 19 6 0.5479 1.3943 7.0906 20 6 -0.1924 0.3623 6.5357 21 6 0.2836 -0.3124 5.4304 22 6 -1.4526 0.2222 7.3573 23 8 -1.5817 1.4505 8.0965 24 6 -0.2330 1.9222 8.2713 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 3.1299 -0.7209 -1.2496 32 1 1.6766 -1.7490 -1.2493 33 1 1.6670 -0.1929 -5.6868 34 1 1.6767 -1.7490 1.2492 35 1 3.1301 -0.7209 1.2494 36 1 0.5439 0.0413 2.4401 37 1 1.6588 -1.7222 3.6873 38 1 3.1119 -0.6941 3.6867 39 1 3.1938 1.3408 5.0036 40 1 2.3389 2.5519 6.9710 41 1 -0.2935 -1.1163 4.9978 42 1 -2.3138 0.0850 6.7035 43 1 -1.3624 -0.6208 8.0424 44 1 -0.2141 3.0120 8.2772 45 1 0.1828 1.5348 9.2014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344965680.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:31 Heat of formation + Delta-G solvation = -26.215586 kcal Electronic energy + Delta-G solvation = -22474.157745 eV Core-core repulsion = 19263.009564 eV Total energy + Delta-G solvation = -3211.148181 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.91952 -38.33715 -37.39223 -34.59337 -32.37519 -31.76316 -31.28235 -28.46785 -27.67417 -26.47631 -26.37567 -24.83862 -23.54170 -21.99627 -21.79052 -20.86009 -17.93640 -16.95887 -16.77700 -16.66956 -16.36925 -15.53884 -15.34174 -14.82656 -14.58293 -14.07876 -14.00004 -13.77038 -13.36079 -13.26060 -12.88486 -12.78406 -12.69372 -12.37411 -12.21226 -12.02627 -11.88826 -11.40187 -11.14448 -11.04911 -10.95552 -10.85864 -10.50006 -10.36908 -10.33807 -9.82260 -9.68249 -9.33809 -9.10045 -8.91348 -8.71801 -8.49885 -8.19748 -6.00067 -3.96266 0.96629 1.09706 3.31453 3.36743 3.39444 3.42671 3.60484 3.90249 4.31419 4.47947 4.50435 4.63286 4.74475 4.97812 5.00694 5.06062 5.18165 5.23400 5.26673 5.32884 5.41161 5.46473 5.59058 5.64108 5.69153 5.83025 5.86888 6.01382 6.07333 6.12387 6.23149 6.36851 6.40052 6.42157 6.59096 6.66647 6.69308 6.79747 7.06620 7.12382 7.16920 7.25731 7.32503 7.45039 7.57483 7.85208 8.59794 9.05961 9.62962 11.13082 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.034735 B = 0.002720 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.914559 B =10293.265882 C =10427.190575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.048 4.048 3 C -0.118 4.118 4 C -0.004 4.004 5 C -0.507 4.507 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.067 3.933 14 N -0.680 5.680 15 C 0.095 3.905 16 C -0.069 4.069 17 C -0.091 4.091 18 C -0.094 4.094 19 C -0.138 4.138 20 C -0.134 4.134 21 C -0.088 4.088 22 C 0.092 3.908 23 O -0.362 6.362 24 C 0.092 3.908 25 H 0.035 0.965 26 H 0.070 0.930 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.015 0.985 32 H 0.008 0.992 33 H 0.261 0.739 34 H 0.024 0.976 35 H 0.067 0.933 36 H 0.341 0.659 37 H 0.036 0.964 38 H 0.080 0.920 39 H 0.131 0.869 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.800 -0.311 26.017 26.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.049 4.049 3 C -0.175 4.175 4 C -0.042 4.042 5 C -0.545 4.545 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.704 3.296 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.191 1.191 13 C -0.062 4.062 14 N -0.312 5.312 15 C -0.033 4.033 16 C -0.069 4.069 17 C -0.110 4.110 18 C -0.112 4.112 19 C -0.138 4.138 20 C -0.134 4.134 21 C -0.107 4.107 22 C 0.015 3.985 23 O -0.281 6.281 24 C 0.015 3.985 25 H 0.054 0.946 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.033 0.967 32 H 0.026 0.974 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.085 0.915 36 H 0.161 0.839 37 H 0.054 0.946 38 H 0.099 0.901 39 H 0.149 0.851 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.115 0.885 43 H 0.094 0.906 44 H 0.114 0.886 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.486 0.239 25.891 25.896 hybrid contribution 0.264 -1.798 -0.406 1.862 sum -0.222 -1.559 25.484 25.533 Atomic orbital electron populations 1.21787 0.95615 1.00433 1.01002 1.20418 0.95076 0.96211 0.93178 1.21608 0.99649 0.95481 1.00742 1.19632 0.96043 0.95228 0.93319 1.21138 1.31445 1.13217 0.88678 0.90419 1.25023 0.95815 0.96760 0.96032 1.69913 1.46141 1.40646 0.97827 0.86844 0.81308 0.83969 0.77515 1.20531 1.21553 1.19135 1.22172 0.99839 0.94694 0.89452 1.60598 1.16729 1.53403 1.00481 1.20894 1.00533 0.94331 0.87588 1.19839 0.94129 0.96650 0.96280 1.21057 1.00180 0.94726 0.95013 1.20390 0.94628 0.99942 0.96234 1.21001 0.96356 0.98390 0.98075 1.20952 0.97698 0.97631 0.97152 1.20284 0.95699 0.99950 0.94735 1.21738 0.95711 0.87780 0.93248 1.89082 1.24946 1.38601 1.75472 1.21730 0.81463 1.00246 0.95021 0.94598 0.91115 0.94160 0.94224 0.92130 0.93658 0.96690 0.97399 0.92891 0.95798 0.91459 0.83926 0.94589 0.90120 0.85135 0.85724 0.85928 0.88472 0.90645 0.88574 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 7.89 37.16 0.29 -2.10 16 2 C -0.05 -0.92 0.60 -154.51 -0.09 -1.01 16 3 C -0.12 -2.24 8.06 37.16 0.30 -1.94 16 4 C 0.00 -0.10 3.11 -27.88 -0.09 -0.19 16 5 C -0.51 -13.94 8.20 -34.44 -0.28 -14.22 16 6 H 0.08 2.28 5.92 -52.48 -0.31 1.97 16 7 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.91 -27.76 13.96 55.43 0.77 -26.99 16 9 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 C 0.07 1.06 4.65 -3.82 -0.02 1.04 16 14 N -0.68 -9.20 5.70 -115.05 -0.66 -9.86 16 15 C 0.10 1.07 5.81 -4.97 -0.03 1.04 16 16 C -0.07 -0.74 5.40 -104.59 -0.56 -1.30 16 17 C -0.09 -0.93 9.70 -39.55 -0.38 -1.32 16 18 C -0.09 -0.88 10.04 -39.66 -0.40 -1.28 16 19 C -0.14 -1.36 6.32 -104.40 -0.66 -2.02 16 20 C -0.13 -1.36 6.32 -104.40 -0.66 -2.02 16 21 C -0.09 -0.90 9.70 -39.66 -0.38 -1.29 16 22 C 0.09 0.81 7.63 36.19 0.28 1.08 16 23 O -0.36 -3.78 11.72 -35.23 -0.41 -4.20 16 24 C 0.09 0.77 7.63 36.19 0.28 1.05 16 25 H 0.04 0.56 6.57 -51.93 -0.34 0.22 16 26 H 0.07 1.47 6.62 -51.93 -0.34 1.12 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 30 H 0.04 0.79 7.60 -51.93 -0.39 0.39 16 31 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 32 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.34 4.60 6.76 -39.29 -0.27 4.33 16 37 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 38 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 39 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 354.80 15.07 5.35 5.35 Total: -1.00 -30.71 354.80 -9.55 -40.26 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -7.42 Total: 1.15 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -2.51 Total: -22.73 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.12 Total: -36.85 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: -0.41 Total: -4.20 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.71 -9.55 -40.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344965680.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.044 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds