Wall clock time and date at job start Tue Mar 31 2020 06:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00162 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99868 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47023 * 90.00014 * 9 7 5 11 11 H 1.48496 * 109.47251 * 210.00457 * 9 7 5 12 12 H 1.48498 * 109.47139 * 330.00202 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46901 * 109.46769 * 299.99531 * 13 2 1 15 15 C 1.46906 * 110.99793 * 180.02562 * 14 13 2 16 16 C 1.50700 * 109.47183 * 180.02562 * 15 14 13 17 17 C 1.38266 * 119.97472 * 269.72746 * 16 15 14 18 18 C 1.38307 * 120.03609 * 179.78508 * 17 16 15 19 19 C 1.37964 * 119.91729 * 0.47093 * 18 17 16 20 20 C 1.38597 * 120.04247 * 359.77901 * 19 18 17 21 21 C 1.37971 * 120.03910 * 359.97438 * 20 19 18 22 22 C 1.51085 * 107.27125 * 179.97438 * 20 19 18 23 23 O 1.43938 * 105.95950 * 17.68856 * 22 20 19 24 24 C 1.43948 * 104.94584 * 331.55548 * 23 22 20 25 25 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 26 26 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 27 27 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 30 30 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 31 31 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 32 32 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 33 33 H 0.96996 * 119.99309 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 35 35 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 36 36 H 1.00898 * 110.99877 * 56.04956 * 14 13 2 37 37 H 1.08995 * 109.47087 * 299.99901 * 15 14 13 38 38 H 1.09002 * 109.46903 * 59.99922 * 15 14 13 39 39 H 1.07996 * 119.98269 * 359.97438 * 17 16 15 40 40 H 1.07997 * 120.03610 * 180.25107 * 18 17 16 41 41 H 1.07997 * 120.04029 * 180.02562 * 21 20 19 42 42 H 1.09000 * 110.15121 * 136.81745 * 22 20 19 43 43 H 1.09003 * 110.15076 * 258.56403 * 22 20 19 44 44 H 1.09002 * 110.14750 * 147.56841 * 24 23 22 45 45 H 1.08996 * 110.15145 * 269.24807 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 1.4321 0.1381 -4.8058 9 14 2.9460 -1.9996 -3.9035 10 1 2.0882 -3.2110 -3.9490 11 1 3.7379 -1.9064 -5.1562 12 1 3.8664 -2.0882 -2.7415 13 6 2.0401 -0.7213 1.2492 14 7 1.5504 -0.0288 2.4486 15 6 2.0220 -0.6947 3.6703 16 6 1.5004 0.0419 4.8771 17 6 2.2415 1.0680 5.4337 18 6 1.7620 1.7477 6.5387 19 6 0.5479 1.3943 7.0906 20 6 -0.1924 0.3623 6.5357 21 6 0.2836 -0.3124 5.4304 22 6 -1.4526 0.2222 7.3573 23 8 -1.5817 1.4505 8.0965 24 6 -0.2330 1.9222 8.2713 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 3.1299 -0.7209 -1.2496 32 1 1.6766 -1.7490 -1.2493 33 1 1.6670 -0.1929 -5.6868 34 1 1.6767 -1.7490 1.2492 35 1 3.1301 -0.7209 1.2494 36 1 0.5439 0.0413 2.4401 37 1 1.6588 -1.7222 3.6873 38 1 3.1119 -0.6941 3.6867 39 1 3.1938 1.3408 5.0036 40 1 2.3389 2.5519 6.9710 41 1 -0.2935 -1.1163 4.9978 42 1 -2.3138 0.0850 6.7035 43 1 -1.3624 -0.6208 8.0424 44 1 -0.2141 3.0120 8.2772 45 1 0.1828 1.5348 9.2014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344965680.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:30 Heat of formation + Delta-G solvation = -44.566389 kcal Electronic energy + Delta-G solvation = -22474.953496 eV Core-core repulsion = 19263.009564 eV Total energy + Delta-G solvation = -3211.943931 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.61367 -39.43230 -38.47633 -35.81750 -34.30200 -32.48606 -32.27595 -29.76367 -28.96909 -27.92643 -27.48065 -26.01891 -24.58972 -23.41677 -22.66772 -21.63283 -19.48211 -18.86382 -17.67329 -17.34758 -17.13599 -16.51818 -16.39158 -16.23222 -15.72894 -15.35421 -15.18595 -14.91919 -14.60005 -14.38055 -14.09430 -14.02284 -13.63919 -13.55507 -13.38453 -13.28108 -12.85176 -12.79351 -12.68704 -12.41233 -12.23656 -12.14994 -12.07194 -11.82188 -11.69338 -11.36493 -11.07297 -10.97306 -10.81417 -10.69528 -9.83394 -9.47548 -9.22718 -8.21261 -6.21679 0.22348 0.37799 1.36043 1.38225 1.49217 2.40022 2.61585 2.96376 3.13829 3.20367 3.47755 3.67014 3.87928 4.00779 4.12630 4.18161 4.31074 4.32874 4.41297 4.44064 4.48821 4.56317 4.62026 4.68251 4.76479 4.78363 4.80485 4.92364 4.96289 5.03961 5.09267 5.12032 5.18967 5.32296 5.35544 5.37765 5.45059 5.52645 5.62306 5.63540 5.72509 5.75845 5.82338 5.96575 6.11262 6.42127 6.49236 6.85974 7.40807 8.95109 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.034735 B = 0.002720 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.914559 B =10293.265882 C =10427.190575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.049 4.049 3 C -0.108 4.108 4 C -0.003 4.003 5 C -0.503 4.503 6 H 0.043 0.957 7 C -0.001 4.001 8 N -0.956 5.956 9 Si 0.942 3.058 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.247 1.247 13 C 0.080 3.920 14 N -0.683 5.683 15 C 0.100 3.900 16 C -0.080 4.080 17 C -0.101 4.101 18 C -0.098 4.098 19 C -0.147 4.147 20 C -0.147 4.147 21 C -0.095 4.095 22 C 0.090 3.910 23 O -0.384 6.384 24 C 0.089 3.911 25 H 0.063 0.937 26 H 0.034 0.966 27 H 0.045 0.955 28 H 0.039 0.961 29 H 0.026 0.974 30 H 0.064 0.936 31 H 0.015 0.985 32 H 0.013 0.987 33 H 0.262 0.738 34 H 0.031 0.969 35 H 0.069 0.931 36 H 0.342 0.658 37 H 0.045 0.955 38 H 0.085 0.915 39 H 0.138 0.862 40 H 0.146 0.854 41 H 0.133 0.867 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.108 0.892 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.024 -1.533 28.495 28.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.049 4.049 3 C -0.166 4.166 4 C -0.041 4.041 5 C -0.542 4.542 6 H 0.061 0.939 7 C -0.196 4.196 8 N -0.598 5.598 9 Si 0.767 3.233 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.171 1.171 13 C -0.049 4.049 14 N -0.315 5.315 15 C -0.028 4.028 16 C -0.080 4.080 17 C -0.120 4.120 18 C -0.116 4.116 19 C -0.148 4.148 20 C -0.148 4.148 21 C -0.114 4.114 22 C 0.014 3.986 23 O -0.303 6.303 24 C 0.013 3.987 25 H 0.081 0.919 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.082 0.918 31 H 0.033 0.967 32 H 0.031 0.969 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.088 0.912 36 H 0.162 0.838 37 H 0.063 0.937 38 H 0.104 0.896 39 H 0.156 0.844 40 H 0.163 0.837 41 H 0.151 0.849 42 H 0.122 0.878 43 H 0.109 0.891 44 H 0.126 0.874 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.339 -0.985 28.401 28.420 hybrid contribution -0.053 -1.315 -1.114 1.724 sum 0.286 -2.300 27.287 27.385 Atomic orbital electron populations 1.21694 0.95203 1.00684 1.00589 1.20352 0.95432 0.95883 0.93223 1.21501 0.99522 0.95610 0.99918 1.19602 0.95834 0.95313 0.93364 1.21440 1.30061 1.12096 0.90558 0.93908 1.25950 0.97636 1.00312 0.95748 1.70074 1.48351 1.42921 0.98461 0.85777 0.79698 0.79885 0.77978 1.19583 1.21571 1.17094 1.21893 0.99833 0.94533 0.88649 1.60528 1.16800 1.53592 1.00554 1.20880 1.00791 0.94612 0.86542 1.19841 0.94587 0.97163 0.96409 1.21251 1.00569 0.94753 0.95377 1.20647 0.94715 1.00291 0.95961 1.21293 0.96589 0.98374 0.98526 1.21195 0.98349 0.97851 0.97367 1.20437 0.95747 1.00330 0.94865 1.21861 0.95482 0.87785 0.93498 1.89054 1.26118 1.39338 1.75750 1.21893 0.80575 1.01008 0.95178 0.91855 0.94651 0.93542 0.94193 0.95529 0.91757 0.96710 0.96898 0.92922 0.95115 0.91231 0.83832 0.93706 0.89643 0.84418 0.83671 0.84917 0.87792 0.89114 0.87445 0.88998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.45 7.89 71.98 0.57 -3.88 16 2 C -0.05 -1.79 0.60 -52.18 -0.03 -1.82 16 3 C -0.11 -4.08 8.06 71.98 0.58 -3.50 16 4 C 0.00 -0.15 3.11 29.85 0.09 -0.06 16 5 C -0.50 -28.28 8.20 25.60 0.21 -28.07 16 6 H 0.04 2.65 5.92 -2.91 -0.02 2.63 16 7 C 0.00 -0.06 5.47 84.65 0.46 0.41 16 8 N -0.96 -60.38 13.96 21.45 0.30 -60.08 16 9 Si 0.94 44.53 27.47 68.60 1.88 46.41 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 13 C 0.08 2.32 4.65 86.30 0.40 2.72 16 14 N -0.68 -16.65 5.70 -517.91 -2.95 -19.60 16 15 C 0.10 1.97 5.81 85.56 0.50 2.47 16 16 C -0.08 -1.54 5.40 -19.85 -0.11 -1.64 16 17 C -0.10 -1.85 9.70 22.29 0.22 -1.64 16 18 C -0.10 -1.64 10.04 22.22 0.22 -1.42 16 19 C -0.15 -2.62 6.32 -19.72 -0.12 -2.75 16 20 C -0.15 -2.73 6.32 -19.72 -0.12 -2.86 16 21 C -0.10 -1.77 9.70 22.22 0.22 -1.55 16 22 C 0.09 1.43 7.63 71.36 0.54 1.97 16 23 O -0.38 -7.40 11.72 -148.98 -1.75 -9.14 16 24 C 0.09 1.33 7.63 71.36 0.54 1.88 16 25 H 0.06 1.89 6.57 -2.39 -0.02 1.87 16 26 H 0.03 1.49 6.62 -2.39 -0.02 1.48 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.03 1.15 6.62 -2.38 -0.02 1.13 16 30 H 0.06 2.15 7.60 -2.39 -0.02 2.13 16 31 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 32 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 33 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 34 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.34 8.27 6.76 -89.70 -0.61 7.67 16 37 H 0.04 0.82 8.08 -2.39 -0.02 0.80 16 38 H 0.09 1.61 8.08 -2.39 -0.02 1.59 16 39 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 40 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 41 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -66.86 354.80 1.96 -64.90 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.31 Total: 17.26 kcal Atomic # 6 Polarization: -43.91 SS G_CDS: 4.17 Total: -39.74 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -2.65 Total: -79.68 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -1.75 Total: -9.14 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.41 kcal Total: -66.86 1.96 -64.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344965680.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.332 kcal (2) G-P(sol) polarization free energy of solvation -66.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds