Wall clock time and date at job start Tue Mar 31 2020 05:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46896 * 110.99939 * 2 1 4 4 C 1.50704 * 109.46919 * 293.95259 * 3 2 1 5 5 H 1.07995 * 119.99932 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99764 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99979 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99628 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47345 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46942 * 120.00211 * 8 6 4 11 11 H 1.48504 * 109.47379 * 239.99757 * 8 6 4 12 12 C 1.46900 * 111.00042 * 123.95065 * 2 1 3 13 13 H 1.08997 * 112.85062 * 301.66970 * 12 2 1 14 14 C 1.53778 * 113.69320 * 170.39690 * 12 2 1 15 15 C 1.53779 * 87.08011 * 220.01177 * 14 12 2 16 16 H 1.09001 * 113.61092 * 270.88118 * 15 14 12 17 17 O 1.42903 * 113.69297 * 139.99648 * 15 14 12 18 18 C 1.35892 * 117.00247 * 104.82431 * 17 15 14 19 19 C 1.38743 * 120.05566 * 178.97280 * 18 17 15 20 20 C 1.38141 * 119.94250 * 179.70067 * 19 18 17 21 21 C 1.38267 * 120.05841 * 0.60017 * 20 19 18 22 22 C 1.38271 * 120.10830 * 359.67602 * 21 20 19 23 23 C 1.38137 * 120.05594 * 0.02562 * 22 21 20 24 24 C 1.53776 * 87.08458 * 25.42986 * 15 14 12 25 25 C 1.53001 * 113.61330 * 220.01818 * 24 15 14 26 26 C 1.53001 * 113.61004 * 89.11916 * 24 15 14 27 27 H 1.08999 * 109.47156 * 298.74753 * 1 2 3 28 28 H 1.08999 * 109.46780 * 58.74842 * 1 2 3 29 29 H 1.09004 * 109.47133 * 178.74701 * 1 2 3 30 30 H 1.08997 * 109.47203 * 53.95128 * 3 2 1 31 31 H 1.08995 * 109.47287 * 173.95204 * 3 2 1 32 32 H 0.96998 * 119.99821 * 180.02562 * 7 6 4 33 33 H 1.08999 * 113.61366 * 334.56034 * 14 12 2 34 34 H 1.08993 * 113.61326 * 105.46080 * 14 12 2 35 35 H 1.08001 * 120.02457 * 0.02562 * 19 18 17 36 36 H 1.07995 * 119.97326 * 180.27764 * 20 19 18 37 37 H 1.08001 * 119.94822 * 179.69819 * 21 20 19 38 38 H 1.08005 * 119.96902 * 180.02562 * 22 21 20 39 39 H 1.08005 * 120.02537 * 179.97438 * 23 22 21 40 40 H 1.09003 * 109.46507 * 157.49838 * 25 24 15 41 41 H 1.08998 * 109.47385 * 277.49549 * 25 24 15 42 42 H 1.08996 * 109.46991 * 37.50172 * 25 24 15 43 43 H 1.09000 * 109.47072 * 326.75820 * 26 24 15 44 44 H 1.08998 * 109.47554 * 86.76740 * 26 24 15 45 45 H 1.09002 * 109.46959 * 206.76358 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0277 3.3491 -1.5290 7 7 2.7137 4.0012 -0.6159 8 14 1.5839 4.1863 -3.1388 9 1 0.8156 3.2440 -3.9914 10 1 0.7569 5.3879 -2.8602 11 1 2.8258 4.5929 -3.8442 12 6 1.9955 -0.7659 1.1376 13 1 1.6549 -0.3830 2.0996 14 6 3.5132 -1.0051 1.0722 15 6 3.2330 -2.4229 1.5975 16 1 3.2307 -2.4930 2.6853 17 8 4.0318 -3.4331 0.9782 18 6 5.0586 -3.9419 1.7087 19 6 5.8615 -4.9407 1.1771 20 6 6.9084 -5.4519 1.9193 21 6 7.1488 -4.9778 3.1957 22 6 6.3465 -3.9864 3.7300 23 6 5.3021 -3.4676 2.9894 24 6 1.8286 -2.2871 0.9861 25 6 0.7194 -2.8724 1.8626 26 6 1.7460 -2.7528 -0.4690 27 1 -0.3633 0.4942 0.9010 28 1 -0.3633 0.5332 -0.8786 29 1 -0.3633 -1.0275 -0.0225 30 1 1.5611 1.9273 0.8309 31 1 3.0797 1.3444 0.1083 32 1 2.9882 4.9173 -0.7779 33 1 3.9149 -0.9862 0.0591 34 1 4.0828 -0.3870 1.7661 35 1 5.6714 -5.3145 0.1818 36 1 7.5365 -6.2262 1.5043 37 1 7.9648 -5.3822 3.7763 38 1 6.5365 -3.6175 4.7271 39 1 4.6755 -2.6936 3.4074 40 1 -0.2330 -2.4127 1.5983 41 1 0.6599 -3.9489 1.7028 42 1 0.9409 -2.6722 2.9108 43 1 2.6889 -2.5397 -0.9726 44 1 1.5533 -3.8252 -0.4969 45 1 0.9370 -2.2250 -0.9740 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347480048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:14 Heat of formation + Delta-G solvation = 14.159900 kcal Electronic energy + Delta-G solvation = -23410.873380 eV Core-core repulsion = 20201.476012 eV Total energy + Delta-G solvation = -3209.397368 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.68678 -39.12421 -36.84030 -34.70140 -32.26719 -31.11951 -30.48567 -29.73698 -27.26118 -27.04826 -25.61350 -23.80520 -22.62155 -22.54715 -21.68031 -20.26175 -18.33654 -17.96527 -16.28301 -16.12447 -15.79894 -15.19803 -14.87413 -14.81449 -14.44850 -14.26597 -13.83454 -13.49755 -13.29805 -13.11285 -12.90253 -12.63037 -12.16324 -11.99317 -11.79923 -11.75861 -11.61309 -11.41468 -11.27639 -11.01507 -10.91362 -10.77967 -10.59441 -10.47934 -10.32901 -10.16996 -9.83811 -9.52608 -9.11893 -9.07298 -8.43272 -8.13845 -7.25103 -6.02280 -4.03099 1.27349 1.41819 3.30782 3.31100 3.38720 3.43525 3.73884 4.43050 4.56706 4.71387 4.74484 4.82373 4.88141 4.99519 5.08571 5.17453 5.30929 5.33660 5.39882 5.43845 5.56810 5.60015 5.71439 5.85408 5.92913 5.96382 6.05816 6.16003 6.21228 6.24002 6.28364 6.32419 6.35040 6.45538 6.46977 6.50814 6.64063 6.74298 6.80731 6.90912 7.32437 7.34621 7.57090 7.81790 8.10446 8.20455 8.56416 9.05052 9.61091 11.08718 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020952 B = 0.003675 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.088576 B = 7616.783014 C = 8216.790549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.520 5.520 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.284 1.284 12 C 0.068 3.932 13 H 0.055 0.945 14 C -0.135 4.135 15 C 0.057 3.943 16 H 0.094 0.906 17 O -0.292 6.292 18 C 0.140 3.860 19 C -0.159 4.159 20 C -0.082 4.082 21 C -0.169 4.169 22 C -0.080 4.080 23 C -0.213 4.213 24 C -0.062 4.062 25 C -0.139 4.139 26 C -0.106 4.106 27 H 0.009 0.991 28 H 0.073 0.927 29 H 0.047 0.953 30 H -0.012 1.012 31 H 0.032 0.968 32 H 0.260 0.740 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.129 0.871 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.062 0.938 44 H 0.042 0.958 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.413 -17.582 8.009 19.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.244 5.244 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.042 4.042 13 H 0.072 0.928 14 C -0.173 4.173 15 C 0.001 3.999 16 H 0.112 0.888 17 O -0.205 6.205 18 C 0.094 3.906 19 C -0.178 4.178 20 C -0.100 4.100 21 C -0.187 4.187 22 C -0.098 4.098 23 C -0.232 4.232 24 C -0.063 4.063 25 C -0.196 4.196 26 C -0.163 4.163 27 H 0.028 0.972 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.006 0.994 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.121 0.879 34 H 0.086 0.914 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.147 0.853 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.061 0.939 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.576 -17.666 7.403 19.485 hybrid contribution -0.371 1.257 0.292 1.342 sum 3.204 -16.409 7.694 18.404 Atomic orbital electron populations 1.22236 0.88986 0.99340 1.00629 1.62271 1.06689 1.17619 1.37847 1.19716 0.95610 0.81455 0.96471 1.21198 1.34578 0.96855 1.01696 0.91819 1.24985 0.95350 0.97398 0.96924 1.69967 1.38487 1.11381 1.34045 0.86465 0.78143 0.79307 0.83646 1.19657 1.21194 1.21035 1.22766 0.94996 0.92561 0.93855 0.92753 1.23456 0.96900 0.93718 1.03243 1.24329 0.91618 0.86992 0.96976 0.88809 1.86204 1.39619 1.53158 1.41475 1.19140 0.88491 0.92722 0.90248 1.20467 0.97066 0.98718 1.01519 1.20935 0.96168 0.98790 0.94133 1.21005 1.01461 0.99788 0.96464 1.20938 0.94037 0.95570 0.99253 1.21331 1.01983 1.04700 0.95186 1.22171 0.91344 0.95471 0.97306 1.21828 0.98545 1.00603 0.98613 1.21263 1.03444 0.98692 0.92876 0.97226 0.90809 0.93388 0.99397 0.95005 0.93040 0.87852 0.91445 0.85337 0.85691 0.86261 0.86074 0.85322 0.91910 0.92597 0.93026 0.91858 0.93893 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 8.80 60.07 0.53 1.22 16 2 N -0.52 -10.81 3.75 -235.35 -0.88 -11.70 16 3 C 0.19 4.93 4.64 -4.98 -0.02 4.91 16 4 C -0.50 -14.04 8.50 -34.44 -0.29 -14.33 16 5 H 0.06 1.76 7.11 -52.49 -0.37 1.39 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 8 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.07 1.18 2.62 -66.90 -0.18 1.01 16 13 H 0.05 0.95 8.10 -51.93 -0.42 0.53 16 14 C -0.14 -2.28 6.29 -25.92 -0.16 -2.44 16 15 C 0.06 0.82 3.17 -25.92 -0.08 0.73 16 16 H 0.09 1.19 5.61 -51.93 -0.29 0.90 16 17 O -0.29 -4.34 9.15 -19.40 -0.18 -4.52 16 18 C 0.14 1.90 6.69 -39.21 -0.26 1.64 16 19 C -0.16 -1.92 9.99 -39.43 -0.39 -2.32 16 20 C -0.08 -0.84 10.04 -39.61 -0.40 -1.24 16 21 C -0.17 -1.69 10.04 -39.56 -0.40 -2.08 16 22 C -0.08 -0.85 10.04 -39.61 -0.40 -1.25 16 23 C -0.21 -2.63 9.06 -39.44 -0.36 -2.99 16 24 C -0.06 -0.91 0.82 -153.70 -0.13 -1.04 16 25 C -0.14 -1.71 9.16 37.16 0.34 -1.37 16 26 C -0.11 -1.61 7.98 37.16 0.30 -1.32 16 27 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 28 H 0.07 1.50 6.82 -51.93 -0.35 1.15 16 29 H 0.05 0.77 5.57 -51.93 -0.29 0.49 16 30 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 31 H 0.03 0.87 7.22 -51.93 -0.37 0.50 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.10 1.95 7.71 -51.93 -0.40 1.55 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 36 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 39 H 0.13 1.48 5.79 -52.48 -0.30 1.18 16 40 H 0.06 0.77 7.16 -51.93 -0.37 0.40 16 41 H 0.05 0.64 8.11 -51.93 -0.42 0.22 16 42 H 0.05 0.58 7.94 -51.93 -0.41 0.17 16 43 H 0.06 1.06 7.10 -51.93 -0.37 0.69 16 44 H 0.04 0.59 8.10 -51.93 -0.42 0.16 16 45 H 0.07 1.13 6.08 -51.93 -0.32 0.81 16 LS Contribution 353.72 15.07 5.33 5.33 Total: -1.00 -29.93 353.72 -9.22 -39.15 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -7.21 Total: 0.47 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -2.00 Total: -19.42 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: -0.15 Total: -37.65 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.18 Total: -4.52 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.93 -9.22 -39.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347480048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.313 kcal (2) G-P(sol) polarization free energy of solvation -29.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds