Wall clock time and date at job start Tue Mar 31 2020 05:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46896 * 110.99939 * 2 1 4 4 C 1.50704 * 109.46919 * 293.95259 * 3 2 1 5 5 H 1.07995 * 119.99932 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99764 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99979 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99628 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47345 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46942 * 120.00211 * 8 6 4 11 11 H 1.48504 * 109.47379 * 239.99757 * 8 6 4 12 12 C 1.46900 * 111.00042 * 123.95065 * 2 1 3 13 13 H 1.08997 * 112.85062 * 301.66970 * 12 2 1 14 14 C 1.53778 * 113.69320 * 170.39690 * 12 2 1 15 15 C 1.53779 * 87.08011 * 220.01177 * 14 12 2 16 16 H 1.09001 * 113.61092 * 270.88118 * 15 14 12 17 17 O 1.42903 * 113.69297 * 139.99648 * 15 14 12 18 18 C 1.35892 * 117.00247 * 104.82431 * 17 15 14 19 19 C 1.38743 * 120.05566 * 178.97280 * 18 17 15 20 20 C 1.38141 * 119.94250 * 179.70067 * 19 18 17 21 21 C 1.38267 * 120.05841 * 0.60017 * 20 19 18 22 22 C 1.38271 * 120.10830 * 359.67602 * 21 20 19 23 23 C 1.38137 * 120.05594 * 0.02562 * 22 21 20 24 24 C 1.53776 * 87.08458 * 25.42986 * 15 14 12 25 25 C 1.53001 * 113.61330 * 220.01818 * 24 15 14 26 26 C 1.53001 * 113.61004 * 89.11916 * 24 15 14 27 27 H 1.08999 * 109.47156 * 298.74753 * 1 2 3 28 28 H 1.08999 * 109.46780 * 58.74842 * 1 2 3 29 29 H 1.09004 * 109.47133 * 178.74701 * 1 2 3 30 30 H 1.08997 * 109.47203 * 53.95128 * 3 2 1 31 31 H 1.08995 * 109.47287 * 173.95204 * 3 2 1 32 32 H 0.96998 * 119.99821 * 180.02562 * 7 6 4 33 33 H 1.08999 * 113.61366 * 334.56034 * 14 12 2 34 34 H 1.08993 * 113.61326 * 105.46080 * 14 12 2 35 35 H 1.08001 * 120.02457 * 0.02562 * 19 18 17 36 36 H 1.07995 * 119.97326 * 180.27764 * 20 19 18 37 37 H 1.08001 * 119.94822 * 179.69819 * 21 20 19 38 38 H 1.08005 * 119.96902 * 180.02562 * 22 21 20 39 39 H 1.08005 * 120.02537 * 179.97438 * 23 22 21 40 40 H 1.09003 * 109.46507 * 157.49838 * 25 24 15 41 41 H 1.08998 * 109.47385 * 277.49549 * 25 24 15 42 42 H 1.08996 * 109.46991 * 37.50172 * 25 24 15 43 43 H 1.09000 * 109.47072 * 326.75820 * 26 24 15 44 44 H 1.08998 * 109.47554 * 86.76740 * 26 24 15 45 45 H 1.09002 * 109.46959 * 206.76358 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0277 3.3491 -1.5290 7 7 2.7137 4.0012 -0.6159 8 14 1.5839 4.1863 -3.1388 9 1 0.8156 3.2440 -3.9914 10 1 0.7569 5.3879 -2.8602 11 1 2.8258 4.5929 -3.8442 12 6 1.9955 -0.7659 1.1376 13 1 1.6549 -0.3830 2.0996 14 6 3.5132 -1.0051 1.0722 15 6 3.2330 -2.4229 1.5975 16 1 3.2307 -2.4930 2.6853 17 8 4.0318 -3.4331 0.9782 18 6 5.0586 -3.9419 1.7087 19 6 5.8615 -4.9407 1.1771 20 6 6.9084 -5.4519 1.9193 21 6 7.1488 -4.9778 3.1957 22 6 6.3465 -3.9864 3.7300 23 6 5.3021 -3.4676 2.9894 24 6 1.8286 -2.2871 0.9861 25 6 0.7194 -2.8724 1.8626 26 6 1.7460 -2.7528 -0.4690 27 1 -0.3633 0.4942 0.9010 28 1 -0.3633 0.5332 -0.8786 29 1 -0.3633 -1.0275 -0.0225 30 1 1.5611 1.9273 0.8309 31 1 3.0797 1.3444 0.1083 32 1 2.9882 4.9173 -0.7779 33 1 3.9149 -0.9862 0.0591 34 1 4.0828 -0.3870 1.7661 35 1 5.6714 -5.3145 0.1818 36 1 7.5365 -6.2262 1.5043 37 1 7.9648 -5.3822 3.7763 38 1 6.5365 -3.6175 4.7271 39 1 4.6755 -2.6936 3.4074 40 1 -0.2330 -2.4127 1.5983 41 1 0.6599 -3.9489 1.7028 42 1 0.9409 -2.6722 2.9108 43 1 2.6889 -2.5397 -0.9726 44 1 1.5533 -3.8252 -0.4969 45 1 0.9370 -2.2250 -0.9740 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347480048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:13 Heat of formation + Delta-G solvation = -1.877985 kcal Electronic energy + Delta-G solvation = -23411.568835 eV Core-core repulsion = 20201.476012 eV Total energy + Delta-G solvation = -3210.092823 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.85723 -40.18684 -37.97080 -36.33226 -34.33177 -32.03387 -31.62688 -30.65296 -29.22589 -28.25439 -27.06853 -25.36937 -24.04019 -23.48420 -22.80723 -21.79711 -19.41561 -19.23402 -18.35418 -17.25643 -16.78235 -16.60807 -16.30885 -16.15530 -15.75627 -15.47567 -15.17020 -14.86734 -14.35624 -14.31928 -14.24414 -14.04222 -13.62922 -13.31636 -13.15182 -12.94141 -12.87466 -12.80754 -12.71019 -12.49078 -12.41177 -12.37883 -12.08401 -11.95556 -11.75864 -11.51485 -11.42794 -10.97888 -10.84423 -10.61381 -9.91969 -9.08316 -8.99468 -8.20375 -6.29662 0.42724 0.53998 1.39642 1.40661 1.53993 2.24622 2.40642 2.87503 3.12519 3.34119 3.43803 3.47188 3.69515 3.77432 3.96527 4.04848 4.23051 4.31022 4.35742 4.45134 4.53071 4.54869 4.60191 4.61922 4.74832 4.79224 4.88147 4.89080 5.01878 5.03543 5.11368 5.12705 5.15349 5.19604 5.26887 5.32479 5.41128 5.50466 5.52289 5.62958 5.63341 5.67664 5.93620 6.08016 6.34659 6.55368 6.68593 6.87520 7.39975 8.90942 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020952 B = 0.003675 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.088576 B = 7616.783014 C = 8216.790549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.525 5.525 3 C 0.210 3.790 4 C -0.520 4.520 5 H 0.063 0.937 6 C 0.001 3.999 7 N -0.935 5.935 8 Si 0.967 3.033 9 H -0.263 1.263 10 H -0.278 1.278 11 H -0.280 1.280 12 C 0.058 3.942 13 H 0.058 0.942 14 C -0.142 4.142 15 C 0.075 3.925 16 H 0.115 0.885 17 O -0.307 6.307 18 C 0.109 3.891 19 C -0.174 4.174 20 C -0.082 4.082 21 C -0.166 4.166 22 C -0.086 4.086 23 C -0.226 4.226 24 C -0.053 4.053 25 C -0.135 4.135 26 C -0.101 4.101 27 H 0.008 0.992 28 H 0.055 0.945 29 H 0.081 0.919 30 H -0.042 1.042 31 H 0.005 0.995 32 H 0.263 0.737 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.131 0.869 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.131 0.869 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.039 0.961 44 H 0.062 0.938 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.393 -19.510 8.530 21.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.249 5.249 3 C 0.084 3.916 4 C -0.558 4.558 5 H 0.081 0.919 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.792 3.208 9 H -0.187 1.187 10 H -0.204 1.204 11 H -0.206 1.206 12 C -0.051 4.051 13 H 0.076 0.924 14 C -0.180 4.180 15 C 0.019 3.981 16 H 0.132 0.868 17 O -0.220 6.220 18 C 0.064 3.936 19 C -0.192 4.192 20 C -0.100 4.100 21 C -0.184 4.184 22 C -0.104 4.104 23 C -0.245 4.245 24 C -0.053 4.053 25 C -0.192 4.192 26 C -0.158 4.158 27 H 0.027 0.973 28 H 0.074 0.926 29 H 0.100 0.900 30 H -0.025 1.025 31 H 0.023 0.977 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.149 0.851 36 H 0.171 0.829 37 H 0.166 0.834 38 H 0.162 0.838 39 H 0.149 0.851 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.551 -19.622 7.929 21.460 hybrid contribution -0.256 1.785 0.183 1.813 sum 3.295 -17.837 8.112 19.870 Atomic orbital electron populations 1.22227 0.87656 1.01153 0.99686 1.62169 1.07911 1.14803 1.39982 1.19323 0.93822 0.83820 0.94654 1.21511 1.34503 0.97400 1.02391 0.91902 1.25897 0.95108 0.98138 1.00572 1.70093 1.39516 1.11831 1.36161 0.85360 0.78014 0.78237 0.79165 1.18693 1.20422 1.20577 1.22918 0.95252 0.94208 0.92713 0.92432 1.23412 0.96543 0.96316 1.01770 1.24128 0.91018 0.85193 0.97801 0.86777 1.86166 1.40382 1.53201 1.42249 1.19447 0.89020 0.94026 0.91088 1.20714 0.97638 0.98773 1.02089 1.21310 0.95580 0.98943 0.94162 1.21421 1.01618 0.98933 0.96474 1.21286 0.93404 0.95533 1.00161 1.21478 1.02893 1.05079 0.95047 1.22088 0.92783 0.92843 0.97609 1.21810 0.97307 1.01353 0.98712 1.21202 1.01793 0.99832 0.92998 0.97344 0.92577 0.90042 1.02457 0.97724 0.92801 0.90663 0.91872 0.85075 0.82910 0.83412 0.83824 0.85147 0.91636 0.91045 0.91700 0.94158 0.91913 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.55 8.80 127.69 1.12 2.68 16 2 N -0.52 -22.47 3.75 -898.51 -3.37 -25.83 16 3 C 0.21 11.30 4.64 85.56 0.40 11.70 16 4 C -0.52 -29.76 8.50 25.60 0.22 -29.54 16 5 H 0.06 3.54 7.11 -2.91 -0.02 3.52 16 6 C 0.00 0.03 5.46 84.66 0.46 0.49 16 7 N -0.94 -57.00 13.29 21.45 0.28 -56.72 16 8 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 9 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 12 C 0.06 2.06 2.62 45.44 0.12 2.18 16 13 H 0.06 2.02 8.10 -2.39 -0.02 2.00 16 14 C -0.14 -5.02 6.29 31.12 0.20 -4.82 16 15 C 0.08 2.12 3.17 31.12 0.10 2.22 16 16 H 0.11 2.75 5.61 -2.39 -0.01 2.74 16 17 O -0.31 -9.12 9.15 -92.34 -0.85 -9.97 16 18 C 0.11 2.92 6.69 22.51 0.15 3.07 16 19 C -0.17 -4.04 9.99 22.37 0.22 -3.81 16 20 C -0.08 -1.49 10.04 22.25 0.22 -1.27 16 21 C -0.17 -2.84 10.04 22.28 0.22 -2.62 16 22 C -0.09 -1.65 10.04 22.25 0.22 -1.43 16 23 C -0.23 -5.35 9.06 22.36 0.20 -5.15 16 24 C -0.05 -1.49 0.82 -51.66 -0.04 -1.54 16 25 C -0.13 -2.98 9.16 71.98 0.66 -2.32 16 26 C -0.10 -3.04 7.98 71.98 0.57 -2.46 16 27 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.06 2.31 6.82 -2.39 -0.02 2.29 16 29 H 0.08 2.52 5.57 -2.38 -0.01 2.51 16 30 H -0.04 -2.48 8.12 -2.39 -0.02 -2.50 16 31 H 0.00 0.27 7.22 -2.39 -0.02 0.25 16 32 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 33 H 0.07 3.06 7.71 -2.39 -0.02 3.04 16 34 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 37 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 38 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.13 2.90 5.79 -2.91 -0.02 2.88 16 40 H 0.06 1.43 7.16 -2.39 -0.02 1.41 16 41 H 0.07 1.39 8.11 -2.39 -0.02 1.37 16 42 H 0.06 1.28 7.94 -2.39 -0.02 1.26 16 43 H 0.04 1.38 7.10 -2.39 -0.02 1.36 16 44 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 45 H 0.06 1.93 6.08 -2.39 -0.01 1.91 16 Total: -1.00 -66.53 353.72 4.11 -62.42 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.96 Total: 15.79 kcal Atomic # 6 Polarization: -37.67 SS G_CDS: 5.05 Total: -32.61 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -3.08 Total: -82.55 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.85 Total: -9.97 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -66.53 4.11 -62.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347480048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.538 kcal (2) G-P(sol) polarization free energy of solvation -66.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds