Wall clock time and date at job start Tue Mar 31 2020 05:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 110.99896 * 2 1 4 4 C 1.50697 * 109.47425 * 66.04435 * 3 2 1 5 5 H 1.08012 * 119.99725 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00429 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00176 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99816 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.46423 * 90.00171 * 8 6 4 10 10 H 1.48495 * 109.47365 * 210.00271 * 8 6 4 11 11 H 1.48496 * 109.47053 * 330.00666 * 8 6 4 12 12 C 1.46898 * 111.00191 * 236.04719 * 2 1 3 13 13 H 1.08992 * 112.90965 * 64.55438 * 12 2 1 14 14 C 1.53954 * 113.66565 * 195.86288 * 12 2 1 15 15 C 1.53785 * 87.11312 * 139.88817 * 14 12 2 16 16 H 1.08997 * 113.61213 * 220.08747 * 15 14 12 17 17 O 1.42901 * 113.61433 * 89.18406 * 15 14 12 18 18 C 1.35892 * 116.99795 * 106.11826 * 17 15 14 19 19 C 1.38738 * 120.05520 * 173.92771 * 18 17 15 20 20 C 1.38151 * 119.94030 * 179.69924 * 19 18 17 21 21 C 1.38255 * 120.05660 * 0.59841 * 20 19 18 22 22 C 1.38268 * 120.11452 * 359.67565 * 21 20 19 23 23 C 1.38137 * 120.05415 * 0.02562 * 22 21 20 24 24 C 1.53779 * 87.07912 * 334.63751 * 15 14 12 25 25 C 1.53001 * 113.61600 * 139.98480 * 24 15 14 26 26 C 1.53010 * 113.61398 * 270.80223 * 24 15 14 27 27 H 1.08998 * 109.46709 * 178.50460 * 1 2 3 28 28 H 1.09001 * 109.47198 * 298.50108 * 1 2 3 29 29 H 1.09003 * 109.47179 * 58.50653 * 1 2 3 30 30 H 1.09003 * 109.47184 * 186.04518 * 3 2 1 31 31 H 1.09006 * 109.47074 * 306.04427 * 3 2 1 32 32 H 0.97000 * 119.99878 * 179.97438 * 7 6 4 33 33 H 1.08997 * 113.53951 * 25.33126 * 14 12 2 34 34 H 1.09001 * 113.73770 * 254.46655 * 14 12 2 35 35 H 1.07996 * 120.02770 * 359.97438 * 19 18 17 36 36 H 1.08006 * 119.96500 * 180.27320 * 20 19 18 37 37 H 1.08004 * 119.94414 * 179.70177 * 21 20 19 38 38 H 1.07997 * 119.97314 * 179.97438 * 22 21 20 39 39 H 1.08002 * 120.02655 * 180.02562 * 23 22 21 40 40 H 1.09000 * 109.46822 * 200.86218 * 25 24 15 41 41 H 1.09000 * 109.46929 * 320.85845 * 25 24 15 42 42 H 1.08991 * 109.47282 * 80.86003 * 25 24 15 43 43 H 1.08998 * 109.47001 * 290.80468 * 26 24 15 44 44 H 1.08998 * 109.46727 * 50.80327 * 26 24 15 45 45 H 1.08994 * 109.47155 * 170.80608 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0267 3.3495 1.5284 7 7 1.7143 3.9390 2.6617 8 14 2.9999 4.2762 0.2309 9 1 2.0631 4.9798 -0.6817 10 1 3.8862 5.2679 0.8912 11 1 3.8238 3.3176 -0.5484 12 6 1.9955 -0.7659 -1.1376 13 1 1.7449 -0.3215 -2.1007 14 6 3.4833 -1.1364 -0.9976 15 6 3.1181 -2.5063 -1.5934 16 1 3.6324 -3.3408 -1.1168 17 8 3.1927 -2.5484 -3.0198 18 6 4.2444 -3.2157 -3.5631 19 6 4.3131 -3.4048 -4.9359 20 6 5.3866 -4.0781 -5.4862 21 6 6.3856 -4.5740 -4.6693 22 6 6.3167 -4.3918 -3.3004 23 6 5.2485 -3.7139 -2.7456 24 6 1.6958 -2.2722 -1.0576 25 6 0.5960 -2.7301 -2.0177 26 6 1.4874 -2.7806 0.3704 27 1 -0.3633 -1.0273 -0.0268 28 1 -0.3633 0.4904 0.9031 29 1 -0.3634 0.5369 -0.8763 30 1 3.0798 1.3444 -0.1082 31 1 1.5611 1.9274 -0.8310 32 1 1.9888 4.8552 2.8236 33 1 3.8239 -1.1867 0.0365 34 1 4.1440 -0.5462 -1.6327 35 1 3.5304 -3.0222 -5.5740 36 1 5.4427 -4.2217 -6.5552 37 1 7.2216 -5.1043 -5.1011 38 1 7.0981 -4.7805 -2.6643 39 1 5.1953 -3.5715 -1.6764 40 1 -0.3362 -2.2218 -1.7713 41 1 0.8828 -2.4874 -3.0409 42 1 0.4580 -3.8073 -1.9248 43 1 1.5143 -3.8702 0.3757 44 1 2.2789 -2.3945 1.0126 45 1 0.5206 -2.4393 0.7402 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347480049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:17 Heat of formation + Delta-G solvation = 20.150068 kcal Electronic energy + Delta-G solvation = -23514.337433 eV Core-core repulsion = 20305.199818 eV Total energy + Delta-G solvation = -3209.137615 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.85083 -39.19458 -36.91815 -34.77220 -32.24191 -31.20923 -30.59458 -29.78884 -27.84782 -27.17040 -25.67777 -23.74174 -22.72418 -22.48247 -21.77570 -20.19268 -18.67643 -17.82965 -16.72286 -16.00061 -15.80729 -15.39678 -15.16980 -14.75811 -14.44943 -14.31885 -13.81049 -13.70399 -13.58153 -12.95346 -12.90016 -12.68502 -12.26750 -12.24713 -11.97061 -11.84406 -11.76422 -11.68071 -11.41631 -11.14472 -11.05811 -10.92546 -10.58959 -10.49972 -10.35512 -9.91394 -9.77360 -9.54730 -9.20478 -9.14901 -8.56749 -8.26184 -7.37600 -6.04543 -4.01316 1.18985 1.31944 3.08253 3.28754 3.36464 3.39346 3.65260 4.42961 4.51331 4.63017 4.68132 4.72825 4.79931 4.94378 4.98881 5.16592 5.22803 5.24678 5.31257 5.40533 5.46684 5.55672 5.73644 5.82988 5.85574 5.89617 5.96896 6.04289 6.13077 6.19594 6.22590 6.25138 6.27261 6.34585 6.37599 6.38103 6.55614 6.62033 6.74769 6.78783 6.89835 7.01966 7.44161 7.63115 7.93163 8.08414 8.67564 9.04147 9.57939 11.08626 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.004045 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.348931 B = 6921.181221 C = 7718.596214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.515 5.515 3 C 0.162 3.838 4 C -0.506 4.506 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.901 5.901 8 Si 0.873 3.127 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.267 1.267 12 C 0.069 3.931 13 H 0.058 0.942 14 C -0.141 4.141 15 C 0.059 3.941 16 H 0.087 0.913 17 O -0.290 6.290 18 C 0.138 3.862 19 C -0.158 4.158 20 C -0.083 4.083 21 C -0.166 4.166 22 C -0.080 4.080 23 C -0.209 4.209 24 C -0.065 4.065 25 C -0.136 4.136 26 C -0.115 4.115 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.010 0.990 30 H 0.028 0.972 31 H -0.019 1.019 32 H 0.263 0.737 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.045 0.955 44 H 0.069 0.931 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.245 -18.164 -13.206 23.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.238 5.238 3 C 0.035 3.965 4 C -0.545 4.545 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.541 5.541 8 Si 0.701 3.299 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.192 1.192 12 C -0.041 4.041 13 H 0.075 0.925 14 C -0.179 4.179 15 C 0.002 3.998 16 H 0.105 0.895 17 O -0.203 6.203 18 C 0.092 3.908 19 C -0.176 4.176 20 C -0.101 4.101 21 C -0.184 4.184 22 C -0.098 4.098 23 C -0.228 4.228 24 C -0.065 4.065 25 C -0.193 4.193 26 C -0.172 4.172 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.028 0.972 30 H 0.046 0.954 31 H -0.001 1.001 32 H 0.073 0.927 33 H 0.124 0.876 34 H 0.087 0.913 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.149 0.851 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.088 0.912 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.251 -18.099 -12.755 22.756 hybrid contribution 0.439 1.144 -1.265 1.761 sum 5.689 -16.955 -14.020 22.724 Atomic orbital electron populations 1.22298 0.88438 0.99545 1.01072 1.62181 1.07170 1.16193 1.38306 1.20162 0.95295 0.84177 0.96824 1.21034 1.35392 0.97128 1.00904 0.90128 1.24886 0.95786 0.97385 0.95250 1.69889 1.47035 1.13237 1.23905 0.86892 0.80705 0.80100 0.82243 1.20404 1.21176 1.19205 1.23121 0.94713 0.92614 0.93618 0.92474 1.23508 0.97410 0.94964 1.02042 1.23535 0.99266 0.98809 0.78153 0.89545 1.86069 1.42803 1.69245 1.22135 1.19111 0.87264 0.91603 0.92807 1.20461 1.00769 1.04213 0.92203 1.20939 0.93127 0.96311 0.99709 1.21027 1.00065 1.03589 0.93765 1.20959 0.96984 0.96767 0.95140 1.21365 0.96327 1.04632 1.00465 1.22114 0.92189 0.95984 0.96240 1.21676 0.97840 1.00458 0.99334 1.21469 1.03912 0.98591 0.93209 0.92946 0.90464 0.97154 0.95398 1.00104 0.92712 0.87636 0.91259 0.85386 0.85623 0.86169 0.85941 0.85080 0.92390 0.91920 0.92970 0.93631 0.91209 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 8.89 60.07 0.53 1.19 16 2 N -0.51 -10.45 3.97 -235.24 -0.93 -11.38 16 3 C 0.16 3.92 3.73 -4.98 -0.02 3.91 16 4 C -0.51 -14.29 9.09 -34.44 -0.31 -14.61 16 5 H 0.08 2.46 7.35 -52.48 -0.39 2.07 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 8 Si 0.87 21.76 27.47 -169.99 -4.67 17.09 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 12 C 0.07 1.18 2.57 -66.81 -0.17 1.01 16 13 H 0.06 1.05 8.10 -51.93 -0.42 0.63 16 14 C -0.14 -2.22 6.61 -25.83 -0.17 -2.39 16 15 C 0.06 0.80 3.20 -25.92 -0.08 0.71 16 16 H 0.09 1.03 5.91 -51.93 -0.31 0.72 16 17 O -0.29 -4.07 8.63 -19.40 -0.17 -4.23 16 18 C 0.14 1.77 6.68 -39.21 -0.26 1.50 16 19 C -0.16 -1.80 9.99 -39.43 -0.39 -2.19 16 20 C -0.08 -0.79 10.04 -39.61 -0.40 -1.19 16 21 C -0.17 -1.55 10.04 -39.56 -0.40 -1.95 16 22 C -0.08 -0.80 10.04 -39.61 -0.40 -1.20 16 23 C -0.21 -2.42 9.02 -39.43 -0.36 -2.77 16 24 C -0.06 -0.90 0.74 -153.69 -0.11 -1.02 16 25 C -0.14 -1.74 8.95 37.16 0.33 -1.41 16 26 C -0.11 -1.53 8.14 37.16 0.30 -1.23 16 27 H 0.05 0.84 4.65 -51.93 -0.24 0.60 16 28 H 0.08 1.61 6.90 -51.93 -0.36 1.26 16 29 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 30 H 0.03 0.69 6.54 -51.93 -0.34 0.35 16 31 H -0.02 -0.47 7.54 -51.93 -0.39 -0.86 16 32 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 33 H 0.11 1.68 7.60 -51.93 -0.39 1.28 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 39 H 0.13 1.41 5.92 -52.49 -0.31 1.10 16 40 H 0.06 0.74 7.13 -51.93 -0.37 0.37 16 41 H 0.06 0.83 7.02 -51.93 -0.36 0.47 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 1.01 7.31 -51.93 -0.38 0.63 16 45 H 0.07 1.00 6.15 -51.93 -0.32 0.68 16 LS Contribution 349.18 15.07 5.26 5.26 Total: -1.00 -30.63 349.18 -8.87 -39.50 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.13 Total: 0.36 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -2.00 Total: -19.74 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: -0.16 Total: -38.24 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.17 Total: -4.23 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.63 -8.87 -39.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347480049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.646 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds